Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023734.1 Length=35725 Score E Sequences producing significant alignments: (Bits) Value seq7304 764 0.0 seq9034 95.1 3e-15 >seq7304 Length=19908 Score = 764 bits (846), Expect = 0.0 Identities = 1354/1954 (69%), Gaps = 38/1954 (2%) Strand=Plus/Minus Query 12342 TAAGAATTACAGATATGCACAACGTCGAAGTGTTTTGTATGGCGTATGACA-CTTATCGC 12400 ||| | ||||||||||||||||||| ||| |||| || ||||| ||| ||| |||| || Sbjct 14859 TAAAACTTACAGATATGCACAACGTTGAAATGTTCTGCATGGCCTATCACAACTTA-CGT 14801 Query 12401 CAAAGCCAGAAAGAGCTTGCGAAAGAAGGTGTTACCGTTATGGGTGCGTCAGGCAGCCCA 12460 || ||| | || ||| | | || |||| || | ||||| || | Sbjct 14800 GAAGCACAGCATGAAGTTGTTTTATATGGAATTACTATTCAAACAGAATCAGGAAG---A 14744 Query 12461 ATTAAAAATCCAGCATTGACCGCACTCAACGAGGCAGCAAGACAGATGGCAACTTTTGGT 12520 ||||||||||||| || || || |||| || ||| ||| ||| || || ||||| Sbjct 14743 GTTAAAAATCCAGCTTTAACTGCTGTCAATGAAGCATCAAAACAAATCGCTCAATTTGGC 14684 Query 12521 AGCTTACTAGGATTAGATCCTTCATCTCGTCAACGCTTAACGGGTGCGGGTGATAAAAAT 12580 | |||| |||||||| |||| ||| ||||||| ||||| || | || | Sbjct 14683 TCAATGTTAGGTCTAGATCCTGCATCACGTACACGCTTATTGGGTGGTGGCGGAAAGCCT 14624 Query 12581 CAAACCAACCCATTTGCAGGTGTTCTGAATATGTGATGAATGCTCAAGCGAGATAAATAT 12640 | | ||||||||| |||| || |||| |||| ||| | || || || Sbjct 14623 AAGAACAACCCATTCGCAGAGGTAATGAACATGTAGTGAGGCC---------ATTAA-AT 14574 Query 12641 GGTCGATTATCCCAATGTTGATATCGCCAATAAGTGGGCAAGAGCA-GTCGTCAAAGGAA 12699 | | || || ||||||||||| || ||||||||||| | |||| ||||| | | Sbjct 14573 GACAGCTTTCCCGAATGTTGATATTGCAAATAAGTGGGCTA-AGCAAGTCGTTTTAAATA 14515 Query 12700 AAATACCAGCATGCAAATGGGTGATTTTGGCTTGCCAACGTCACCTAGATGACTTAAAAG 12759 |||| || ||||| |||||||| | || || || |||| ||| || ||||||||||| Sbjct 14514 AAATCCCTGCATGTAAATGGGTTAAATTAGCCTGTGAACGCCACTTAAATGACTTAAAAA 14455 Query 12760 C-ATCaaaaaaaCGTGACTATCCATACAAATTTGACCCAAAAGCTGCTGAAAAGAAGATA 12818 | |||||| | || | | ||| ||||||||||| ||| |||||||| |||||| Sbjct 14454 ATAGCAAAAATAAA-GATTTTTTATATAAATTTGACCCTAAATTAGCTGAAAAAAAGATA 14396 Query 12819 CTTTTTGTTGAATTGCTGCCACATACCAAAGGTGAGTGGGCATTAAAGCGCTTAAAAATT 12878 ||| |||||||| |||| || || ||||||||||||||| | || | | || | Sbjct 14395 GCTTTCATTGAATTGTTGCCCCACACAAAAGGTGAGTGGGCAATGAAAAGAATGAAGCTA 14336 Query 12879 CAGCTTGAACCTTGGCAAAAATTTGGTATTGCGGTCACGTTCGGTTGGATGCGTAAAAAA 12938 || || |||||||| |||||||| ||||| || ||||| ||| | |||||||| Sbjct 14335 AGACTAGAGCCTTGGCAGAAATTTGGAATTGCTTGTACTTTCGGCTGGGTTCGTAAAAAG 14276 Query 12939 GATGGCTTCCGCCGCTTTCGTGAGTCCTATTGGGAAGTGCCGCGTAAAAATGGCAAGTCA 12998 ||||| | ||| || || | ||||| ||||||||| | || ||||||||||| |||||| Sbjct 14275 GATGGGTACCGTCGATTCAGGGAGTCTTATTGGGAAATTCCTCGTAAAAATGGTAAGTCA 14216 Query 12999 GCAATTGCTGCCGGCGTCGCTCTTAATATGTTTGCCAATGATGGTGAGTTTGGTAGCGAA 13058 |||||||| || || || ||||| ||||||||||| ||||||||||| | || ||||| Sbjct 14215 GCAATTGCAGCTGGTGTTGCTCTCAATATGTTTGCTAATGATGGTGAATCGGGCAGCGAG 14156 Query 13059 GTTTATTCAGGCGCTACAACAGAGAAGCAAGCGTGGGAGGTTTTTAAGCCGGCACGTTTG 13118 ||||| | || || || || || || ||||| ||||| || ||||| || || || || Sbjct 14155 GTTTACGCTGGTGCGACCACCGAAAAACAAGCATGGGAAGTATTTAAACCAGCTCGATTA 14096 Query 13119 ATGGTGTTACGATCACCTGCCTTGGTATCAGCAACCGGCATACAGATTAACGCGGCCAGT 13178 |||| | || ||||||| || || ||| | || |||||||| || || | |||| Sbjct 14095 ATGGCAGTGCGTTCACCTGATTTTGTTGAGGCAGCTGGAATACAGATAAATGCTGGCAGT 14036 Query 13179 CTCGAGCGCCCCGATGATGGTTCTTTGTTTGAACCCATTATTGGCAACCCGCCAGATGGT 13238 || || || || ||||| || || |||||| | ||| | ||| | ||||| ||||| Sbjct 14035 CTTGAAATACCTGAAGATGGCTCATTATTTGAAACTATTGTAGGCGATCCGCCTGATGGA 13976 Query 13239 CAGTCACCACATTGCGCCATCGTTGATGAATATCATGAGCAT---GCTGATAGCAGTCTC 13295 |||||||| ||||| || || ||||||||||||| |||||| | || ||| | Sbjct 13975 CAGTCACCGCATTGTGCAATTATTGATGAATATCACGAGCATCAAACAAAT-GCA--CAG 13919 Query 13296 TATGACACGATGCAAACGGGTATGGGTGCGCGCCGCCAACCAATGATGTTTGTCATTACC 13355 || ||||| ||||||||||||||||| ||||| || || ||| |||||||||| ||||| Sbjct 13918 TACGACACTATGCAAACGGGTATGGGGGCGCGTCGTCAGCCATTGATGTTTGTTATTACA 13859 Query 13356 ACAGCCGGGCATAATATTGAAGGTCCTTGTTATGAGCTCCGTAGTCGCGTGCAAGATGTG 13415 ||| | || |||||||| ||||||||| | || | ||| || | ||||| || Sbjct 13858 ACATCAGGTTTCAATATTGATGGTCCTTGTCACGACTTGCGTTTACGTATTCAAGACATG 13799 Query 13416 CTATTGGGTAACGTACCTGATGACGAGTTGTTTGGTTGGATATGGACTATCGATGATGGT 13475 | | |||| || || ||||| ||| ||||||| | || ||||| || ||||| ||| Sbjct 13798 TTGCTTGGTACAGTGCCAGATGATGAGCTGTTTGGATATATCTGGACCATTGATGAGGGT 13739 Query 13476 GATGATTGGGCAGACCCAGACGTACTGATCAAAGCAAATCCCAATTACGATATATCTGTA 13535 ||||| ||| |||| || | ||| | ||| || ||||| ||||||||| | ||||| Sbjct 13738 GATGAGTGGACAGATCCTAAGGTATTAGCCAAGGCCAATCCAAATTACGATGTTTCTGTT 13679 Query 13536 TACGCTGATTTCTTGGAGTCACAACAAACCAAGGCGATTAATAACGCCAGTCGTCAAAAC 13595 || | |||| | | |||||||| ||| ||||| || ||||| | ||||||||| Sbjct 13678 TATGGCGATTACCTTGAGTCACAGCAACGTAAGGCAATAAATAATCCATCTCGTCAAAAT 13619 Query 13596 TCTTTTAAGACTAAGCATCTAAATGTTTGGGTATCTGCAAAATCAGC-GTTCTTTAATAT 13654 | || |||||||||||| |||| ||||||| ||||| | ||| || ||| ||||| Sbjct 13618 ACATTCAAGACTAAGCATTTAAACATTTGGGTTTCTGC-GCGTGAGCAGTACTTCAATAT 13560 Query 13655 GGAGCACTGGAAAGCTTGTGCTGATAACAGCCTAGATATTAATGACTTTGTAGCAACTCC 13714 ||| | ||||| |||||||| ||||| | | || | ||| ||| |||| | | | Sbjct 13559 GGAAAAGTGGAATGCTTGTGCAGATAAAACCTTAAAGCTTAGTGATTTTGCTGAAGATAA 13500 Query 13715 TTGTGTGATGCCGATAGATTTGGCATCCAAGATTGATTTAGCTGCACGTATCAACTTATT 13774 ||||||||||| ||||||||||||| ||||| ||| | ||| || ||||| || || Sbjct 13499 ATGTGTGATGCCATTAGATTTGGCATCAAAGATCGATATTTGTGCGCGAATCAATTTGTT 13440 Query 13775 TTACCGTTACGAAGACGATGGACGATTGCATTATTACTGTATTTCGCCATGGTTTTACTT 13834 || || | | |||||| ||||||| ||||||||||| ||| || ||||| Sbjct 13439 TTGGCGAATCATA---GATGGAAAGGTGCATTACTACTGTATTTCACCAAACTTCTACTT 13383 Query 13835 GCCTGAAGATACGGTTTATAAGGGCGATGAAAAACAAGCTATTGAGCGGTACCAGAAGTG 13894 ||| | || || || | | | || ||||||||| | | | || ||||||||||| || Sbjct 13382 GCCACATGAAACAGTATTTGAAGGTGATGAAAAAGCACTTTTAGATCGGTACCAGAAATG 13323 Query 13895 GATGAACCAAGGTTTGCTGGAAGTGCATGATGGTGCTGAGAACGACCTAAATGCTATTGC 13954 | ||| || | | || || ||||| || ||||| | || | || | || Sbjct 13322 GGACAACATGGGGCTTTTAGATGTTCATGAAGGAGCTGAAACAGATTTGGATTTGGTAGC 13263 Query 13955 TGAAGACTTGGTGGCAGATGCAAATAGATTTCCATTAACCGAAGTGCCTTATGATGAATG 14014 | || || | | ||| | || || || || | | ||||| ||||| || | || Sbjct 13262 TTCGGATTTAATCTCTGATTCGAAAAGTCTTTCAGTTATTGAAGTTCCTTACGACAACTG 13203 Query 14015 GGGCGGATTCCAAGTTGCGGCTACTATCGAAGATGCTGGTTACGATGCTGTAAAGATACC 14074 ||| | | | |||| || | ||| |||| || ||||| | || | Sbjct 13202 GGGTGCACGTTTAATTGCCAAACAGATTAATGATAGTGGTCTTGAAGCTGTTGAAGTAGC 13143 Query 14075 TAA-AACGGTTAAGTCTTTTTCTCCCGCTATGCGTGAGTTAGAGGCTGCAATGAAAAGCG 14133 || ||| | || | ||||| || ||||| || | | ||||| || | Sbjct 13142 AAAGAACACTAAAAAC-TTTTCACCACCTATGAAAGAACTTGTTGCTGCGATTGCTTCAG 13084 Query 14134 GGCGATTTCATCATGACGGCCATCCGGTCTTATCTTGGATGATTGGTAATGTCGTATCAC 14193 | ||||| ||||||||||| |||| | || ||||||||| |||||||||| |||| Sbjct 13083 GTCGATTCCATCATGACGGAAATCCTATTTTGTCTTGGATGGTTGGTAATGT--GATCA- 13027 Query 14194 GCGA---AGATGCAAACAACAACGTATTCCCGCGTAAAGAAACCAAATACaaaaaaaTTG 14250 || | |||||||||||| || | | || |||||| | | || | || || | Sbjct 13026 GCAAACCAGATGCAAACAATAATGATTATCCCCGTAAACAGAAAAACATCTTCAAGATCG 12967 Query 14251 ATGGTGCTGTTGCCCTGCTTATGGGTATCAGTCG 14284 |||| ||||| |||||||||| || | ||| Sbjct 12966 ATGGAGCTGTGTGTTTGCTTATGGGGATTAATCG 12933 >seq9034 Length=15118 Score = 95.1 bits (104), Expect = 3e-15 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 30281 TCACGCGCGCCAACGTCATTGGTGGTCACTTTAGCAAGTCAGGCAGCGCG-GCAAGTGAC 30339 |||| | ||||| || || | ||||| ||| | ||||||| | || ||| ||||| Sbjct 14230 TCACCAGTGCCAATGTGATAGATGGTCGATTTGAATATTCAGGCA-CACGTGCACGTGAC 14172 Query 30340 AGACATACAATTGCCCAAGTGGCTTGGTCAAACCCAGACAATGCGTATGAGACTGAATAT 30399 |||||||| |||||| ||||||||| || ||||| ||| ||| | ||||||||| Sbjct 14171 AGACATACCATTGCCAAAGTGGCTTATGACAATCCAGAAAATCGTTATAAAACTGAATAT 14112 Query 30400 GCGATGGTTCGCAATGAGCGTGCGATCGCTCAGCAAGGCATCAACGTTTTAGATTTATCA 30459 | || || || ||||| |||||| || || | ||||| | | |||||| | || Sbjct 14111 GAAATTGTGCGTGATGAGACTGCGATTGCAAAGTACGGCATTCGCATCTTAGATATTTCT 14052 Query 30460 GCGGTTGGTTGTACGTCTGAGGGTCAAGC 30488 || ||||||||| || | || ||||| Sbjct 14051 GCCTATGGTTGTACTTCAGTAGGGCAAGC 14023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114177978399746