Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_023734.1
Length=35725
Score E
Sequences producing significant alignments: (Bits) Value
seq7304 764 0.0
seq9034 95.1 3e-15
>seq7304
Length=19908
Score = 764 bits (846), Expect = 0.0
Identities = 1354/1954 (69%), Gaps = 38/1954 (2%)
Strand=Plus/Minus
Query 12342 TAAGAATTACAGATATGCACAACGTCGAAGTGTTTTGTATGGCGTATGACA-CTTATCGC 12400
||| | ||||||||||||||||||| ||| |||| || ||||| ||| ||| |||| ||
Sbjct 14859 TAAAACTTACAGATATGCACAACGTTGAAATGTTCTGCATGGCCTATCACAACTTA-CGT 14801
Query 12401 CAAAGCCAGAAAGAGCTTGCGAAAGAAGGTGTTACCGTTATGGGTGCGTCAGGCAGCCCA 12460
|| ||| | || ||| | | || |||| || | ||||| || |
Sbjct 14800 GAAGCACAGCATGAAGTTGTTTTATATGGAATTACTATTCAAACAGAATCAGGAAG---A 14744
Query 12461 ATTAAAAATCCAGCATTGACCGCACTCAACGAGGCAGCAAGACAGATGGCAACTTTTGGT 12520
||||||||||||| || || || |||| || ||| ||| ||| || || |||||
Sbjct 14743 GTTAAAAATCCAGCTTTAACTGCTGTCAATGAAGCATCAAAACAAATCGCTCAATTTGGC 14684
Query 12521 AGCTTACTAGGATTAGATCCTTCATCTCGTCAACGCTTAACGGGTGCGGGTGATAAAAAT 12580
| |||| |||||||| |||| ||| ||||||| ||||| || | || |
Sbjct 14683 TCAATGTTAGGTCTAGATCCTGCATCACGTACACGCTTATTGGGTGGTGGCGGAAAGCCT 14624
Query 12581 CAAACCAACCCATTTGCAGGTGTTCTGAATATGTGATGAATGCTCAAGCGAGATAAATAT 12640
| | ||||||||| |||| || |||| |||| ||| | || || ||
Sbjct 14623 AAGAACAACCCATTCGCAGAGGTAATGAACATGTAGTGAGGCC---------ATTAA-AT 14574
Query 12641 GGTCGATTATCCCAATGTTGATATCGCCAATAAGTGGGCAAGAGCA-GTCGTCAAAGGAA 12699
| | || || ||||||||||| || ||||||||||| | |||| ||||| | |
Sbjct 14573 GACAGCTTTCCCGAATGTTGATATTGCAAATAAGTGGGCTA-AGCAAGTCGTTTTAAATA 14515
Query 12700 AAATACCAGCATGCAAATGGGTGATTTTGGCTTGCCAACGTCACCTAGATGACTTAAAAG 12759
|||| || ||||| |||||||| | || || || |||| ||| || |||||||||||
Sbjct 14514 AAATCCCTGCATGTAAATGGGTTAAATTAGCCTGTGAACGCCACTTAAATGACTTAAAAA 14455
Query 12760 C-ATCaaaaaaaCGTGACTATCCATACAAATTTGACCCAAAAGCTGCTGAAAAGAAGATA 12818
| |||||| | || | | ||| ||||||||||| ||| |||||||| ||||||
Sbjct 14454 ATAGCAAAAATAAA-GATTTTTTATATAAATTTGACCCTAAATTAGCTGAAAAAAAGATA 14396
Query 12819 CTTTTTGTTGAATTGCTGCCACATACCAAAGGTGAGTGGGCATTAAAGCGCTTAAAAATT 12878
||| |||||||| |||| || || ||||||||||||||| | || | | || |
Sbjct 14395 GCTTTCATTGAATTGTTGCCCCACACAAAAGGTGAGTGGGCAATGAAAAGAATGAAGCTA 14336
Query 12879 CAGCTTGAACCTTGGCAAAAATTTGGTATTGCGGTCACGTTCGGTTGGATGCGTAAAAAA 12938
|| || |||||||| |||||||| ||||| || ||||| ||| | ||||||||
Sbjct 14335 AGACTAGAGCCTTGGCAGAAATTTGGAATTGCTTGTACTTTCGGCTGGGTTCGTAAAAAG 14276
Query 12939 GATGGCTTCCGCCGCTTTCGTGAGTCCTATTGGGAAGTGCCGCGTAAAAATGGCAAGTCA 12998
||||| | ||| || || | ||||| ||||||||| | || ||||||||||| ||||||
Sbjct 14275 GATGGGTACCGTCGATTCAGGGAGTCTTATTGGGAAATTCCTCGTAAAAATGGTAAGTCA 14216
Query 12999 GCAATTGCTGCCGGCGTCGCTCTTAATATGTTTGCCAATGATGGTGAGTTTGGTAGCGAA 13058
|||||||| || || || ||||| ||||||||||| ||||||||||| | || |||||
Sbjct 14215 GCAATTGCAGCTGGTGTTGCTCTCAATATGTTTGCTAATGATGGTGAATCGGGCAGCGAG 14156
Query 13059 GTTTATTCAGGCGCTACAACAGAGAAGCAAGCGTGGGAGGTTTTTAAGCCGGCACGTTTG 13118
||||| | || || || || || || ||||| ||||| || ||||| || || || ||
Sbjct 14155 GTTTACGCTGGTGCGACCACCGAAAAACAAGCATGGGAAGTATTTAAACCAGCTCGATTA 14096
Query 13119 ATGGTGTTACGATCACCTGCCTTGGTATCAGCAACCGGCATACAGATTAACGCGGCCAGT 13178
|||| | || ||||||| || || ||| | || |||||||| || || | ||||
Sbjct 14095 ATGGCAGTGCGTTCACCTGATTTTGTTGAGGCAGCTGGAATACAGATAAATGCTGGCAGT 14036
Query 13179 CTCGAGCGCCCCGATGATGGTTCTTTGTTTGAACCCATTATTGGCAACCCGCCAGATGGT 13238
|| || || || ||||| || || |||||| | ||| | ||| | ||||| |||||
Sbjct 14035 CTTGAAATACCTGAAGATGGCTCATTATTTGAAACTATTGTAGGCGATCCGCCTGATGGA 13976
Query 13239 CAGTCACCACATTGCGCCATCGTTGATGAATATCATGAGCAT---GCTGATAGCAGTCTC 13295
|||||||| ||||| || || ||||||||||||| |||||| | || ||| |
Sbjct 13975 CAGTCACCGCATTGTGCAATTATTGATGAATATCACGAGCATCAAACAAAT-GCA--CAG 13919
Query 13296 TATGACACGATGCAAACGGGTATGGGTGCGCGCCGCCAACCAATGATGTTTGTCATTACC 13355
|| ||||| ||||||||||||||||| ||||| || || ||| |||||||||| |||||
Sbjct 13918 TACGACACTATGCAAACGGGTATGGGGGCGCGTCGTCAGCCATTGATGTTTGTTATTACA 13859
Query 13356 ACAGCCGGGCATAATATTGAAGGTCCTTGTTATGAGCTCCGTAGTCGCGTGCAAGATGTG 13415
||| | || |||||||| ||||||||| | || | ||| || | ||||| ||
Sbjct 13858 ACATCAGGTTTCAATATTGATGGTCCTTGTCACGACTTGCGTTTACGTATTCAAGACATG 13799
Query 13416 CTATTGGGTAACGTACCTGATGACGAGTTGTTTGGTTGGATATGGACTATCGATGATGGT 13475
| | |||| || || ||||| ||| ||||||| | || ||||| || ||||| |||
Sbjct 13798 TTGCTTGGTACAGTGCCAGATGATGAGCTGTTTGGATATATCTGGACCATTGATGAGGGT 13739
Query 13476 GATGATTGGGCAGACCCAGACGTACTGATCAAAGCAAATCCCAATTACGATATATCTGTA 13535
||||| ||| |||| || | ||| | ||| || ||||| ||||||||| | |||||
Sbjct 13738 GATGAGTGGACAGATCCTAAGGTATTAGCCAAGGCCAATCCAAATTACGATGTTTCTGTT 13679
Query 13536 TACGCTGATTTCTTGGAGTCACAACAAACCAAGGCGATTAATAACGCCAGTCGTCAAAAC 13595
|| | |||| | | |||||||| ||| ||||| || ||||| | |||||||||
Sbjct 13678 TATGGCGATTACCTTGAGTCACAGCAACGTAAGGCAATAAATAATCCATCTCGTCAAAAT 13619
Query 13596 TCTTTTAAGACTAAGCATCTAAATGTTTGGGTATCTGCAAAATCAGC-GTTCTTTAATAT 13654
| || |||||||||||| |||| ||||||| ||||| | ||| || ||| |||||
Sbjct 13618 ACATTCAAGACTAAGCATTTAAACATTTGGGTTTCTGC-GCGTGAGCAGTACTTCAATAT 13560
Query 13655 GGAGCACTGGAAAGCTTGTGCTGATAACAGCCTAGATATTAATGACTTTGTAGCAACTCC 13714
||| | ||||| |||||||| ||||| | | || | ||| ||| |||| | | |
Sbjct 13559 GGAAAAGTGGAATGCTTGTGCAGATAAAACCTTAAAGCTTAGTGATTTTGCTGAAGATAA 13500
Query 13715 TTGTGTGATGCCGATAGATTTGGCATCCAAGATTGATTTAGCTGCACGTATCAACTTATT 13774
||||||||||| ||||||||||||| ||||| ||| | ||| || ||||| || ||
Sbjct 13499 ATGTGTGATGCCATTAGATTTGGCATCAAAGATCGATATTTGTGCGCGAATCAATTTGTT 13440
Query 13775 TTACCGTTACGAAGACGATGGACGATTGCATTATTACTGTATTTCGCCATGGTTTTACTT 13834
|| || | | |||||| ||||||| ||||||||||| ||| || |||||
Sbjct 13439 TTGGCGAATCATA---GATGGAAAGGTGCATTACTACTGTATTTCACCAAACTTCTACTT 13383
Query 13835 GCCTGAAGATACGGTTTATAAGGGCGATGAAAAACAAGCTATTGAGCGGTACCAGAAGTG 13894
||| | || || || | | | || ||||||||| | | | || ||||||||||| ||
Sbjct 13382 GCCACATGAAACAGTATTTGAAGGTGATGAAAAAGCACTTTTAGATCGGTACCAGAAATG 13323
Query 13895 GATGAACCAAGGTTTGCTGGAAGTGCATGATGGTGCTGAGAACGACCTAAATGCTATTGC 13954
| ||| || | | || || ||||| || ||||| | || | || | ||
Sbjct 13322 GGACAACATGGGGCTTTTAGATGTTCATGAAGGAGCTGAAACAGATTTGGATTTGGTAGC 13263
Query 13955 TGAAGACTTGGTGGCAGATGCAAATAGATTTCCATTAACCGAAGTGCCTTATGATGAATG 14014
| || || | | ||| | || || || || | | ||||| ||||| || | ||
Sbjct 13262 TTCGGATTTAATCTCTGATTCGAAAAGTCTTTCAGTTATTGAAGTTCCTTACGACAACTG 13203
Query 14015 GGGCGGATTCCAAGTTGCGGCTACTATCGAAGATGCTGGTTACGATGCTGTAAAGATACC 14074
||| | | | |||| || | ||| |||| || ||||| | || |
Sbjct 13202 GGGTGCACGTTTAATTGCCAAACAGATTAATGATAGTGGTCTTGAAGCTGTTGAAGTAGC 13143
Query 14075 TAA-AACGGTTAAGTCTTTTTCTCCCGCTATGCGTGAGTTAGAGGCTGCAATGAAAAGCG 14133
|| ||| | || | ||||| || ||||| || | | ||||| || |
Sbjct 13142 AAAGAACACTAAAAAC-TTTTCACCACCTATGAAAGAACTTGTTGCTGCGATTGCTTCAG 13084
Query 14134 GGCGATTTCATCATGACGGCCATCCGGTCTTATCTTGGATGATTGGTAATGTCGTATCAC 14193
| ||||| ||||||||||| |||| | || ||||||||| |||||||||| ||||
Sbjct 13083 GTCGATTCCATCATGACGGAAATCCTATTTTGTCTTGGATGGTTGGTAATGT--GATCA- 13027
Query 14194 GCGA---AGATGCAAACAACAACGTATTCCCGCGTAAAGAAACCAAATACaaaaaaaTTG 14250
|| | |||||||||||| || | | || |||||| | | || | || || |
Sbjct 13026 GCAAACCAGATGCAAACAATAATGATTATCCCCGTAAACAGAAAAACATCTTCAAGATCG 12967
Query 14251 ATGGTGCTGTTGCCCTGCTTATGGGTATCAGTCG 14284
|||| ||||| |||||||||| || | |||
Sbjct 12966 ATGGAGCTGTGTGTTTGCTTATGGGGATTAATCG 12933
>seq9034
Length=15118
Score = 95.1 bits (104), Expect = 3e-15
Identities = 148/209 (71%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 30281 TCACGCGCGCCAACGTCATTGGTGGTCACTTTAGCAAGTCAGGCAGCGCG-GCAAGTGAC 30339
|||| | ||||| || || | ||||| ||| | ||||||| | || ||| |||||
Sbjct 14230 TCACCAGTGCCAATGTGATAGATGGTCGATTTGAATATTCAGGCA-CACGTGCACGTGAC 14172
Query 30340 AGACATACAATTGCCCAAGTGGCTTGGTCAAACCCAGACAATGCGTATGAGACTGAATAT 30399
|||||||| |||||| ||||||||| || ||||| ||| ||| | |||||||||
Sbjct 14171 AGACATACCATTGCCAAAGTGGCTTATGACAATCCAGAAAATCGTTATAAAACTGAATAT 14112
Query 30400 GCGATGGTTCGCAATGAGCGTGCGATCGCTCAGCAAGGCATCAACGTTTTAGATTTATCA 30459
| || || || ||||| |||||| || || | ||||| | | |||||| | ||
Sbjct 14111 GAAATTGTGCGTGATGAGACTGCGATTGCAAAGTACGGCATTCGCATCTTAGATATTTCT 14052
Query 30460 GCGGTTGGTTGTACGTCTGAGGGTCAAGC 30488
|| ||||||||| || | || |||||
Sbjct 14051 GCCTATGGTTGTACTTCAGTAGGGCAAGC 14023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114177978399746
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |