Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_023738.1
Length=106327
Score E
Sequences producing significant alignments: (Bits) Value
seq9968 91.5 1e-13
seq9425 89.7 3e-13
seq9376 89.7 3e-13
seq4123 89.7 3e-13
>seq9968
Length=31652
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/184 (71%), Gaps = 3/184 (2%)
Strand=Plus/Minus
Query 94582 CGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTC 94641
|||| ||| | |||| |||||| ||||| || | ||| |||||| ||| ||||| ||
Sbjct 27742 CGCGTGGGAATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGCTGGGTG 27683
Query 94642 GCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCC 94701
||||||| || || ||||||||||| || |||||||| || | ||| | || ||
Sbjct 27682 GCCAGGATCAGGTGGATGCCGGCCGCGCGGGCCTTCTGGGCCAGGCGCGCGATCAGCTCC 27623
Query 94702 TCAACCTCTTTCTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACG 94761
|| | | |||||| | | ||||||| ||||| || || || || | || | |||
Sbjct 27622 TCGATC---TTCTTGCCGACCACCATCATCAGGTCGGCCAGCTCGTCGATGACGATGACG 27566
Query 94762 ATGT 94765
||||
Sbjct 27565 ATGT 27562
>seq9425
Length=520298
Score = 89.7 bits (98), Expect = 3e-13
Identities = 192/283 (68%), Gaps = 8/283 (3%)
Strand=Plus/Plus
Query 94788 GTGGCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCT---ACGGTGAG 94844
|| ||||||||| ||| ||||| ||||| ||||| |||||||| || ||
Sbjct 178682 GTTGCGCACGCCGACCTTGGACATCTTGCGGTAGCGGTCTTCCATCTCCCGCACCGT--- 178738
Query 94845 CCACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGG 94904
||| ||||| ||| |||| | | || || || |||||| ||| || || ||
Sbjct 178739 CCATTTCAGCGCCACCACTGCCTTCTTCGGGTCGGTGACGACGGGCGTGAGGAGATGCGG 178798
Query 94905 GATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCC 94963
|| |||| || | | |||| ||| || || |||||||||||||| |
Sbjct 178799 AATGCCGTCATAGACCGACAATTCGAG-CATCTTCGGATCGATCATGATGAGGCGGCATT 178857
Query 94964 GATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGC 95023
|| || || ||||||||||||||| | | ||| | ||||||| | |||||||
Sbjct 178858 CTTCCGGCCTCAGCCGGTAGAGCAGCGACAGGATCATGGTGTTGATGGCGACCGACTTGC 178917
Query 95024 CCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGC 95066
| || ||||| | || |||||||||| ||||||||||||||
Sbjct 178918 CGGAACCGGTGGTACCGGCCACCAGCACGTGCGGCATCTTGGC 178960
>seq9376
Length=532321
Score = 89.7 bits (98), Expect = 3e-13
Identities = 101/131 (77%), Gaps = 6/131 (5%)
Strand=Plus/Plus
Query 94978 CGGTAGAGCAGCGAAACCAGCATTGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTCG 95035
|||||||||||||| | | ||| | ||||||| || | ||||||||||| ||||| |
Sbjct 135539 CGGTAGAGCAGCGACAGGATCATGGTGTTGATGGCAACC--GACTTGCCCGAACCGGTGG 135596
Query 95036 CGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGTTCAGGGA-GACGTCCTTACCCTCG 95094
||| || |||||||||||||||||||| |||| |||| | || |||| || || ||
Sbjct 135597 TGCCGGCGACCAGCAGATGCGGCATCTTCGCCA-GTTCGGCGATGACGGGCTCGCCGCCG 135655
Query 95095 ACGTCCTTGCC 95105
| | ||||||
Sbjct 135656 ATGGTCTTGCC 135666
>seq4123
Length=139599
Score = 89.7 bits (98), Expect = 3e-13
Identities = 103/137 (75%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 94935 TTTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAAC 94994
||| |||||||||||||| || | | | || || | | |||||||||||||| |
Sbjct 138438 TTTCGGGTCGATCATGATCAGGCGGCACTGTTCCGGCGACATGCGGTAGAGCAGCGACAG 138497
Query 94995 CAGCATTGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGA 95052
| ||| | ||||||| || | ||||||||||| ||||| | ||| || || || |||
Sbjct 138498 GATCATGGTGTTGATGGCAACC--GACTTGCCCGAGCCGGTGGTGCCGGCGACGAGAAGA 138555
Query 95053 TGCGGCATCTTGGCCAG 95069
|||||||||||||| ||
Sbjct 138556 TGCGGCATCTTGGCGAG 138572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340059176951312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |