Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq9968 91.5 1e-13 seq9425 89.7 3e-13 seq9376 89.7 3e-13 seq4123 89.7 3e-13 >seq9968 Length=31652 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/184 (71%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 94582 CGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTC 94641 |||| ||| | |||| |||||| ||||| || | ||| |||||| ||| ||||| || Sbjct 27742 CGCGTGGGAATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGCTGGGTG 27683 Query 94642 GCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCC 94701 ||||||| || || ||||||||||| || |||||||| || | ||| | || || Sbjct 27682 GCCAGGATCAGGTGGATGCCGGCCGCGCGGGCCTTCTGGGCCAGGCGCGCGATCAGCTCC 27623 Query 94702 TCAACCTCTTTCTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACG 94761 || | | |||||| | | ||||||| ||||| || || || || | || | ||| Sbjct 27622 TCGATC---TTCTTGCCGACCACCATCATCAGGTCGGCCAGCTCGTCGATGACGATGACG 27566 Query 94762 ATGT 94765 |||| Sbjct 27565 ATGT 27562 >seq9425 Length=520298 Score = 89.7 bits (98), Expect = 3e-13 Identities = 192/283 (68%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 94788 GTGGCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCT---ACGGTGAG 94844 || ||||||||| ||| ||||| ||||| ||||| |||||||| || || Sbjct 178682 GTTGCGCACGCCGACCTTGGACATCTTGCGGTAGCGGTCTTCCATCTCCCGCACCGT--- 178738 Query 94845 CCACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGG 94904 ||| ||||| ||| |||| | | || || || |||||| ||| || || || Sbjct 178739 CCATTTCAGCGCCACCACTGCCTTCTTCGGGTCGGTGACGACGGGCGTGAGGAGATGCGG 178798 Query 94905 GATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCC 94963 || |||| || | | |||| ||| || || |||||||||||||| | Sbjct 178799 AATGCCGTCATAGACCGACAATTCGAG-CATCTTCGGATCGATCATGATGAGGCGGCATT 178857 Query 94964 GATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGC 95023 || || || ||||||||||||||| | | ||| | ||||||| | ||||||| Sbjct 178858 CTTCCGGCCTCAGCCGGTAGAGCAGCGACAGGATCATGGTGTTGATGGCGACCGACTTGC 178917 Query 95024 CCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGC 95066 | || ||||| | || |||||||||| |||||||||||||| Sbjct 178918 CGGAACCGGTGGTACCGGCCACCAGCACGTGCGGCATCTTGGC 178960 >seq9376 Length=532321 Score = 89.7 bits (98), Expect = 3e-13 Identities = 101/131 (77%), Gaps = 6/131 (5%) Strand=Plus/Plus Query 94978 CGGTAGAGCAGCGAAACCAGCATTGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTCG 95035 |||||||||||||| | | ||| | ||||||| || | ||||||||||| ||||| | Sbjct 135539 CGGTAGAGCAGCGACAGGATCATGGTGTTGATGGCAACC--GACTTGCCCGAACCGGTGG 135596 Query 95036 CGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGTTCAGGGA-GACGTCCTTACCCTCG 95094 ||| || |||||||||||||||||||| |||| |||| | || |||| || || || Sbjct 135597 TGCCGGCGACCAGCAGATGCGGCATCTTCGCCA-GTTCGGCGATGACGGGCTCGCCGCCG 135655 Query 95095 ACGTCCTTGCC 95105 | | |||||| Sbjct 135656 ATGGTCTTGCC 135666 >seq4123 Length=139599 Score = 89.7 bits (98), Expect = 3e-13 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 94935 TTTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAAC 94994 ||| |||||||||||||| || | | | || || | | |||||||||||||| | Sbjct 138438 TTTCGGGTCGATCATGATCAGGCGGCACTGTTCCGGCGACATGCGGTAGAGCAGCGACAG 138497 Query 94995 CAGCATTGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGA 95052 | ||| | ||||||| || | ||||||||||| ||||| | ||| || || || ||| Sbjct 138498 GATCATGGTGTTGATGGCAACC--GACTTGCCCGAGCCGGTGGTGCCGGCGACGAGAAGA 138555 Query 95053 TGCGGCATCTTGGCCAG 95069 |||||||||||||| || Sbjct 138556 TGCGGCATCTTGGCGAG 138572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340059176951312