Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_023744.1
Length=60588
Score E
Sequences producing significant alignments: (Bits) Value
seq9463 170 7e-38
seq12126 86.0 2e-12
>seq9463
Length=63583
Score = 170 bits (188), Expect = 7e-38
Identities = 745/1153 (65%), Gaps = 63/1153 (5%)
Strand=Plus/Minus
Query 49383 CGCCGGCCTGCCGTTCGTCCACCCGCATGTGGCGCTGATGCCCGACGCGCACGCCGGCAA 49442
|||| ||||||||||| ||||| ||| |||||| |||||||||||| |||| ||||
Sbjct 40950 CGCCAGCCTGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCAT 40891
Query 49443 GGGTTCATCGGTCGGCACCGTCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGG 49502
||| | | |||||| | ||||||||||| ||| || | |||||||| ||||| ||
Sbjct 40890 GGGCGCCACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCGG 40831
Query 49503 CGTGGACATCGGCTGCGGGATGATCGCCGCCCGCACCATCTACACCGAGGACGACCTGGA 49562
||| |||||||||||||| ||||| || | | ||| || | ||| || ||| |
Sbjct 40830 CGTCGACATCGGCTGCGGCATGATGGCGGTGTGGACC-TCGA-TCCG-GGCCGAGC--AT 40776
Query 49563 CGGCCGG--GACCTCGCCGCGCTGCGGCACGCCATCGAGGGCGCGATCCCGCTGTCGCCG 49620
| ||||| || || | ||||||| ||||||||||| ||| | ||||| | ||||
Sbjct 40775 CTGCCGGATTCGCTGGCGGGGCTGCGGTCCGCCATCGAGGCGGCGGTGCCGCT-TGGCCG 40717
Query 49621 GGCAACTACAACCGCG---ACACCGATCGTTTCCCGTGCACC--GCCGGCCGTATCGCC- 49674
| | | |||| ||| || ||| | | || || | |||||| ||||
Sbjct 40716 G--ACCGACAATGGCGGGCGCAACGA------CAAGGGCGCCTGGGCGGCCGAGCCGCCG 40665
Query 49675 ACCCTGACCGAC--CTCGCCGGCCGCG-GCACGGACGGCATCCCAGCGGTTGACCTGTCG 49731
||||| | | | | | ||||||| | | ||| ||||| ||| | | |
Sbjct 40664 GCCCTGGCGGCCGACAAGTGGGCCGCGCTGAAGCCGGGCTATGAAGCGG-TGATC-GCCA 40607
Query 49732 CACTCACCGAAGTGGCGGGAACAGC------TCGGAAGCCTCGGC-----GG----CGGT 49776
| | || | | ||| | | |||| |||| ||| ||| || |||
Sbjct 40606 AGCACCCCAAGGCGGC-GCACCAGCGCGGCTTCGGCCACCTGGGCACCCTGGGGACCGGC 40548
Query 49777 AACCATTTCATCGAACTATGCCTGGACGAAACCGGCCGGGTGTGGCTGTTCCTGCACTCC 49836
||||| |||||||| || |||||||| ||| ||||| | ||| || | |||||||||
Sbjct 40547 AACCACTTCATCGAGCTTTGCCTGGATGAAGAAGGCCGCCTTTGGGTGATGCTGCACTCC 40488
Query 49837 GGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAAGCACATCAAGGTCGCGCAGAAACTC 49896
|| ||||| || || |||||| | ||| | | | || | | || || |
Sbjct 40487 GGCTCGCGCGGGGTGGGCAACCGGTTCGGCTCCTACTTCGTCGAACTGGCCAAGCGCGAC 40428
Query 49897 ATGGACCGCTGGTGGATTCAGCTCCCAAGCCCCGACCTGGCGTACTTGCCGCAAGGCACA 49956
||| ||||||| || | || || || ||||| || ||| ||||||| ||||
Sbjct 40427 ATGCGGCGCTGGTTCATCAACCTGCCGGACCAAGACCTCGCCTACCTGCCGCAGGGCAGC 40368
Query 49957 CCGGAGTTCGCCGACTATCTGCGGGAGCTGCACTGGGCGCAGCGGTTCGCGCTAGAGAAC 50016
|| ||| ||||||| | || | || ||||||||||| | ||| || | |||
Sbjct 40367 GAGGGCTTCACCGACTACATCGAGGCGGTGAACTGGGCGCAGACCTACGCCCTCGCCAAC 40308
Query 50017 CGCGCCGAAATGATGGACCGTTTCGCTATCGTGTTCGGCGAG-TGGATCGGGCACCCCAC 50075
|||| | |||||||||| ||| | |||| | || || ||| || |
Sbjct 40307 CGCGAGGTGATGATGGACC---------AGGTGCTGGGCGTGCTGCGTCAGGCGTTCC-C 40258
Query 50076 CGGCGGGGCGCTGGTGGAAACCACGGTGAACACGCACCACAACTACACGACGCAGGAACG 50135
| | |||| | ||| || |||||||| |||||||||||| ||| ||| |
Sbjct 40257 GGACCTGGCGACGACGGAGACGGCGGTGAACTGCCACCACAACTACGTCGCGCGGGAGCA 40198
Query 50136 GCACGGCGGCCGCGAC-GTGTGGCTGACCCGCAAGGGCGCCATCGACGCGCACGCCGGCG 50194
||| ||| | ||| |||| | ||||||||||| || | || || ||||
Sbjct 40197 TCACTTCGG-CAAGACGGTGTTCGTCACCCGCAAGGGGGCGGTGCGGGCCGGCGAGGGCG 40139
Query 50195 TGATGGGCCTGATCCCGGGCAGCATGGGCACCCCGTCATACGTGGTGCGCGGCAAGGGCA 50254
||||| | ||||| ||| |||||| ||| || | | | |||||||||||||| |
Sbjct 40138 AACTGGGCATCATCCCCGGCTCGATGGGCGCCCGCTCGTTCATCGTGCGCGGCAAGGGGA 40079
Query 50255 ACCCGGCCGGGCTGTGCTCGGCGCCGCACGGCGCCGGCCGCCGGC-AT-TCCCGCACCCA 50312
|| ||| | | | ||| | |||||||||||||||| ||| || ||||| | |
Sbjct 40078 ACGCGGACTCGTTCTGCACCTGCTCGCACGGCGCCGGCCG--GGCGATGAGCCGCAACGA 40021
Query 50313 AGCCCGGAAGCTGTTCACCGAGGCCGACCTCGCCGACCGGATGCAGGGTATCGAGTACCG 50372
||| | || ||||| | || |||| || | | | |||| |||| | |||
Sbjct 40020 GGCCAAGCGGCGCTTCACGGTGGAGGACCACGTCCGCGCCACCGAGGGCGTCGAATGCCG 39961
Query 50373 GCACGGGGACGCGTGGGTTGACGAAATCCCGGACGCCTACAAGCCAATTCAGACCGTGAT 50432
| | | || | | | ||||||| ||| ||||||||| || | |||||||
Sbjct 39960 CAAGGACGCCGAGGTGATCGACGAAACGCCGATGGCCTACAAGGACATCGACGCCGTGAT 39901
Query 50433 GGCCGACGCCGCCGACCTCGTGGAGGTTGTGCACGAGCTGCGGCAGATTCTCAACGTCAA 50492
||||| | || ||||| ||||| | || ||| ||||| ||| | | ||| ||
Sbjct 39900 GGCCGCCCAGGCGGACCTGGTGGATATCGTCCACACCCTGCGCCAGGTGGTGTGCGTGAA 39841
Query 50493 GGGCAAGTGAATG 50505
|||| ||||||
Sbjct 39840 GGGC---TGAATG 39831
>seq12126
Length=13531
Score = 86.0 bits (94), Expect = 2e-12
Identities = 125/176 (71%), Gaps = 3/176 (2%)
Strand=Plus/Minus
Query 50088 GGTGGAAACCA---CGGTGAACACGCACCACAACTACACGACGCAGGAACGGCACGGCGG 50144
||||| ||| | ||| |||| || ||||||||| | | |||| |||| |||
Sbjct 5642 GGTGGCAACGATGGCGGAGAACTGCCATCACAACTACGTGCAGAAGGAGACGCACCACGG 5583
Query 50145 CCGCGACGTGTGGCTGACCCGCAAGGGCGCCATCGACGCGCACGCCGGCGTGATGGGCCT 50204
|| || || | |||| ||||||||||| || ||||| || |||| | ||||| |
Sbjct 5582 CCAGGAACTGCTGGTGACGCGCAAGGGCGCGGTCAGCGCGCGCGAGGGCGAGCTGGGCAT 5523
Query 50205 GATCCCGGGCAGCATGGGCACCCCGTCATACGTGGTGCGCGGCAAGGGCAACCCGG 50260
|| || |||||||||||||| | ||| | ||||| |||||||||||| |||
Sbjct 5522 CATTCCCGGCAGCATGGGCACGCGCAGCTACATCGTGCGTGGCAAGGGCAACGCGG 5467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 193725350746900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |