Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq9463 170 7e-38 seq12126 86.0 2e-12 >seq9463 Length=63583 Score = 170 bits (188), Expect = 7e-38 Identities = 745/1153 (65%), Gaps = 63/1153 (5%) Strand=Plus/Minus Query 49383 CGCCGGCCTGCCGTTCGTCCACCCGCATGTGGCGCTGATGCCCGACGCGCACGCCGGCAA 49442 |||| ||||||||||| ||||| ||| |||||| |||||||||||| |||| |||| Sbjct 40950 CGCCAGCCTGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCAT 40891 Query 49443 GGGTTCATCGGTCGGCACCGTCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGG 49502 ||| | | |||||| | ||||||||||| ||| || | |||||||| ||||| || Sbjct 40890 GGGCGCCACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCGG 40831 Query 49503 CGTGGACATCGGCTGCGGGATGATCGCCGCCCGCACCATCTACACCGAGGACGACCTGGA 49562 ||| |||||||||||||| ||||| || | | ||| || | ||| || ||| | Sbjct 40830 CGTCGACATCGGCTGCGGCATGATGGCGGTGTGGACC-TCGA-TCCG-GGCCGAGC--AT 40776 Query 49563 CGGCCGG--GACCTCGCCGCGCTGCGGCACGCCATCGAGGGCGCGATCCCGCTGTCGCCG 49620 | ||||| || || | ||||||| ||||||||||| ||| | ||||| | |||| Sbjct 40775 CTGCCGGATTCGCTGGCGGGGCTGCGGTCCGCCATCGAGGCGGCGGTGCCGCT-TGGCCG 40717 Query 49621 GGCAACTACAACCGCG---ACACCGATCGTTTCCCGTGCACC--GCCGGCCGTATCGCC- 49674 | | | |||| ||| || ||| | | || || | |||||| |||| Sbjct 40716 G--ACCGACAATGGCGGGCGCAACGA------CAAGGGCGCCTGGGCGGCCGAGCCGCCG 40665 Query 49675 ACCCTGACCGAC--CTCGCCGGCCGCG-GCACGGACGGCATCCCAGCGGTTGACCTGTCG 49731 ||||| | | | | | ||||||| | | ||| ||||| ||| | | | Sbjct 40664 GCCCTGGCGGCCGACAAGTGGGCCGCGCTGAAGCCGGGCTATGAAGCGG-TGATC-GCCA 40607 Query 49732 CACTCACCGAAGTGGCGGGAACAGC------TCGGAAGCCTCGGC-----GG----CGGT 49776 | | || | | ||| | | |||| |||| ||| ||| || ||| Sbjct 40606 AGCACCCCAAGGCGGC-GCACCAGCGCGGCTTCGGCCACCTGGGCACCCTGGGGACCGGC 40548 Query 49777 AACCATTTCATCGAACTATGCCTGGACGAAACCGGCCGGGTGTGGCTGTTCCTGCACTCC 49836 ||||| |||||||| || |||||||| ||| ||||| | ||| || | ||||||||| Sbjct 40547 AACCACTTCATCGAGCTTTGCCTGGATGAAGAAGGCCGCCTTTGGGTGATGCTGCACTCC 40488 Query 49837 GGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAAGCACATCAAGGTCGCGCAGAAACTC 49896 || ||||| || || |||||| | ||| | | | || | | || || | Sbjct 40487 GGCTCGCGCGGGGTGGGCAACCGGTTCGGCTCCTACTTCGTCGAACTGGCCAAGCGCGAC 40428 Query 49897 ATGGACCGCTGGTGGATTCAGCTCCCAAGCCCCGACCTGGCGTACTTGCCGCAAGGCACA 49956 ||| ||||||| || | || || || ||||| || ||| ||||||| |||| Sbjct 40427 ATGCGGCGCTGGTTCATCAACCTGCCGGACCAAGACCTCGCCTACCTGCCGCAGGGCAGC 40368 Query 49957 CCGGAGTTCGCCGACTATCTGCGGGAGCTGCACTGGGCGCAGCGGTTCGCGCTAGAGAAC 50016 || ||| ||||||| | || | || ||||||||||| | ||| || | ||| Sbjct 40367 GAGGGCTTCACCGACTACATCGAGGCGGTGAACTGGGCGCAGACCTACGCCCTCGCCAAC 40308 Query 50017 CGCGCCGAAATGATGGACCGTTTCGCTATCGTGTTCGGCGAG-TGGATCGGGCACCCCAC 50075 |||| | |||||||||| ||| | |||| | || || ||| || | Sbjct 40307 CGCGAGGTGATGATGGACC---------AGGTGCTGGGCGTGCTGCGTCAGGCGTTCC-C 40258 Query 50076 CGGCGGGGCGCTGGTGGAAACCACGGTGAACACGCACCACAACTACACGACGCAGGAACG 50135 | | |||| | ||| || |||||||| |||||||||||| ||| ||| | Sbjct 40257 GGACCTGGCGACGACGGAGACGGCGGTGAACTGCCACCACAACTACGTCGCGCGGGAGCA 40198 Query 50136 GCACGGCGGCCGCGAC-GTGTGGCTGACCCGCAAGGGCGCCATCGACGCGCACGCCGGCG 50194 ||| ||| | ||| |||| | ||||||||||| || | || || |||| Sbjct 40197 TCACTTCGG-CAAGACGGTGTTCGTCACCCGCAAGGGGGCGGTGCGGGCCGGCGAGGGCG 40139 Query 50195 TGATGGGCCTGATCCCGGGCAGCATGGGCACCCCGTCATACGTGGTGCGCGGCAAGGGCA 50254 ||||| | ||||| ||| |||||| ||| || | | | |||||||||||||| | Sbjct 40138 AACTGGGCATCATCCCCGGCTCGATGGGCGCCCGCTCGTTCATCGTGCGCGGCAAGGGGA 40079 Query 50255 ACCCGGCCGGGCTGTGCTCGGCGCCGCACGGCGCCGGCCGCCGGC-AT-TCCCGCACCCA 50312 || ||| | | | ||| | |||||||||||||||| ||| || ||||| | | Sbjct 40078 ACGCGGACTCGTTCTGCACCTGCTCGCACGGCGCCGGCCG--GGCGATGAGCCGCAACGA 40021 Query 50313 AGCCCGGAAGCTGTTCACCGAGGCCGACCTCGCCGACCGGATGCAGGGTATCGAGTACCG 50372 ||| | || ||||| | || |||| || | | | |||| |||| | ||| Sbjct 40020 GGCCAAGCGGCGCTTCACGGTGGAGGACCACGTCCGCGCCACCGAGGGCGTCGAATGCCG 39961 Query 50373 GCACGGGGACGCGTGGGTTGACGAAATCCCGGACGCCTACAAGCCAATTCAGACCGTGAT 50432 | | | || | | | ||||||| ||| ||||||||| || | ||||||| Sbjct 39960 CAAGGACGCCGAGGTGATCGACGAAACGCCGATGGCCTACAAGGACATCGACGCCGTGAT 39901 Query 50433 GGCCGACGCCGCCGACCTCGTGGAGGTTGTGCACGAGCTGCGGCAGATTCTCAACGTCAA 50492 ||||| | || ||||| ||||| | || ||| ||||| ||| | | ||| || Sbjct 39900 GGCCGCCCAGGCGGACCTGGTGGATATCGTCCACACCCTGCGCCAGGTGGTGTGCGTGAA 39841 Query 50493 GGGCAAGTGAATG 50505 |||| |||||| Sbjct 39840 GGGC---TGAATG 39831 >seq12126 Length=13531 Score = 86.0 bits (94), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 50088 GGTGGAAACCA---CGGTGAACACGCACCACAACTACACGACGCAGGAACGGCACGGCGG 50144 ||||| ||| | ||| |||| || ||||||||| | | |||| |||| ||| Sbjct 5642 GGTGGCAACGATGGCGGAGAACTGCCATCACAACTACGTGCAGAAGGAGACGCACCACGG 5583 Query 50145 CCGCGACGTGTGGCTGACCCGCAAGGGCGCCATCGACGCGCACGCCGGCGTGATGGGCCT 50204 || || || | |||| ||||||||||| || ||||| || |||| | ||||| | Sbjct 5582 CCAGGAACTGCTGGTGACGCGCAAGGGCGCGGTCAGCGCGCGCGAGGGCGAGCTGGGCAT 5523 Query 50205 GATCCCGGGCAGCATGGGCACCCCGTCATACGTGGTGCGCGGCAAGGGCAACCCGG 50260 || || |||||||||||||| | ||| | ||||| |||||||||||| ||| Sbjct 5522 CATTCCCGGCAGCATGGGCACGCGCAGCTACATCGTGCGTGGCAAGGGCAACGCGG 5467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193725350746900