Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq14363 95.1 1e-14 seq10858 93.3 4e-14 seq8424 91.5 1e-13 seq7352 86.0 6e-12 seq7041 86.0 6e-12 seq8280 82.4 7e-11 >seq14363 Length=24975 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 146732 TAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGATTCCAGCT 146791 |||||||||||||||||||||||| ||||||| ||||||||||| |||||| ||| || Sbjct 10225 TAGCGCAGCCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCGAGTTCGAATCCCGCC 10284 Query 146792 ACACCGACCAAATTATT 146808 | |||||||||| ||| Sbjct 10285 GCTCCGACCAAATGATT 10301 >seq10858 Length=55950 Score = 93.3 bits (102), Expect = 4e-14 Identities = 197/286 (69%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 111914 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGG- 111972 || || ||||| ||||||| ||| || ||||||| ||||| || | || ||||| || Sbjct 29950 GCCATGGCATTGATGGTCAGGTCGCGCCGGGCCAGATCCTGCTCCAGCGTGACATCGGGC 29891 Query 111973 GCTGAACATCACCTCGAAATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCAG 112032 || | | ||| ||||| | |||| || ||| | ||||||||||| ||||| Sbjct 29890 GCCGC-CTGCACGACGAAACCCCGGTACCCCAGGCCGCTCTTGCGCTCGGTACGCGCCAG 29832 Query 112033 GGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAA-TGCGGCACCGACTTGCT 112091 ||||| || || | ||||| ||||| ||| | || ||||| | | || || || || Sbjct 29831 CGCGTATTCCTCGTGCGTCTCGGGATGGAGGAAGACCGGGAAGTCCCGC-CCCACAGGCA 29773 Query 112092 CGAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCTT 112151 |||||| | || ||| | |||| | |||| ||||||||| | |||| ||||| Sbjct 29772 GAAAGCCGCGCGCGGACATTTGTTCGGGCGTGGCGCCGACCACCCCCCAGTCGCGGTC-A 29714 Query 112152 TGCTC-TCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCA 112196 ||| | | |||| || ||||| ||||||||||| |||| Sbjct 29713 TGCACGGCCCGCCCCAAAAGACGGTCGCGCACCGCGCCGCCCACCA 29668 >seq8424 Length=263062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 146725 CGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAT 146784 ||| || |||||||||||||||||||| ||| ||||||| ||| ||||||| ||||||| Sbjct 49885 CGGAGTGTAGCGCAGCCTGGTAGCGCACCTGATTTGGGATCAGGGGGTCGCAGGTTCGAA 49826 Query 146785 TCCAGCTACACCGACCAA 146802 ||| || || |||||||| Sbjct 49825 TCCTGCCACTCCGACCAA 49808 >seq7352 Length=278960 Score = 86.0 bits (94), Expect = 6e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 146732 TAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGATTCCAGCT 146791 |||||||||||||||||||||||| ||||||| ||||||||||| ||||| | ||| || Sbjct 263659 TAGCGCAGCCTGGTAGCGCATCTGTTTTGGGAGCAGAGGGTCGCAGGTTCAAATCCTGCC 263600 Query 146792 ACACCGACCA 146801 | ||||||| Sbjct 263599 GCTCCGACCA 263590 >seq7041 Length=191181 Score = 86.0 bits (94), Expect = 6e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 146725 CGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAT 146784 ||| || |||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 50145 CGGAGTGTAGCGCAGTCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGGGAGTTCGAA 50086 Query 146785 TCCAGCTACACCGACCA 146801 || | || ||||||| Sbjct 50085 TCTCTCCACTCCGACCA 50069 >seq8280 Length=144189 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 146724 ACGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGA 146783 |||| | |||||||| ||||||||||||||| ||||||| ||||||||||| ||||| | Sbjct 26466 ACGGGGCGTAGCGCAGTCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCAGGTTCAA 26407 Query 146784 TTCCAGCTACACCGACCA 146801 ||| || | ||||||| Sbjct 26406 ATCCTGCCGCCCCGACCA 26389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477100574872080