Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_024354.1
Length=149162
Score E
Sequences producing significant alignments: (Bits) Value
seq14363 95.1 1e-14
seq10858 93.3 4e-14
seq8424 91.5 1e-13
seq7352 86.0 6e-12
seq7041 86.0 6e-12
seq8280 82.4 7e-11
>seq14363
Length=24975
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 146732 TAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGATTCCAGCT 146791
|||||||||||||||||||||||| ||||||| ||||||||||| |||||| ||| ||
Sbjct 10225 TAGCGCAGCCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCGAGTTCGAATCCCGCC 10284
Query 146792 ACACCGACCAAATTATT 146808
| |||||||||| |||
Sbjct 10285 GCTCCGACCAAATGATT 10301
>seq10858
Length=55950
Score = 93.3 bits (102), Expect = 4e-14
Identities = 197/286 (69%), Gaps = 6/286 (2%)
Strand=Plus/Minus
Query 111914 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGG- 111972
|| || ||||| ||||||| ||| || ||||||| ||||| || | || ||||| ||
Sbjct 29950 GCCATGGCATTGATGGTCAGGTCGCGCCGGGCCAGATCCTGCTCCAGCGTGACATCGGGC 29891
Query 111973 GCTGAACATCACCTCGAAATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCAG 112032
|| | | ||| ||||| | |||| || ||| | ||||||||||| |||||
Sbjct 29890 GCCGC-CTGCACGACGAAACCCCGGTACCCCAGGCCGCTCTTGCGCTCGGTACGCGCCAG 29832
Query 112033 GGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAA-TGCGGCACCGACTTGCT 112091
||||| || || | ||||| ||||| ||| | || ||||| | | || || || ||
Sbjct 29831 CGCGTATTCCTCGTGCGTCTCGGGATGGAGGAAGACCGGGAAGTCCCGC-CCCACAGGCA 29773
Query 112092 CGAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCTT 112151
|||||| | || ||| | |||| | |||| ||||||||| | |||| |||||
Sbjct 29772 GAAAGCCGCGCGCGGACATTTGTTCGGGCGTGGCGCCGACCACCCCCCAGTCGCGGTC-A 29714
Query 112152 TGCTC-TCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCA 112196
||| | | |||| || ||||| ||||||||||| ||||
Sbjct 29713 TGCACGGCCCGCCCCAAAAGACGGTCGCGCACCGCGCCGCCCACCA 29668
>seq8424
Length=263062
Score = 91.5 bits (100), Expect = 1e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 146725 CGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAT 146784
||| || |||||||||||||||||||| ||| ||||||| ||| ||||||| |||||||
Sbjct 49885 CGGAGTGTAGCGCAGCCTGGTAGCGCACCTGATTTGGGATCAGGGGGTCGCAGGTTCGAA 49826
Query 146785 TCCAGCTACACCGACCAA 146802
||| || || ||||||||
Sbjct 49825 TCCTGCCACTCCGACCAA 49808
>seq7352
Length=278960
Score = 86.0 bits (94), Expect = 6e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 146732 TAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGATTCCAGCT 146791
|||||||||||||||||||||||| ||||||| ||||||||||| ||||| | ||| ||
Sbjct 263659 TAGCGCAGCCTGGTAGCGCATCTGTTTTGGGAGCAGAGGGTCGCAGGTTCAAATCCTGCC 263600
Query 146792 ACACCGACCA 146801
| |||||||
Sbjct 263599 GCTCCGACCA 263590
>seq7041
Length=191181
Score = 86.0 bits (94), Expect = 6e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 146725 CGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAT 146784
||| || |||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 50145 CGGAGTGTAGCGCAGTCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGGGAGTTCGAA 50086
Query 146785 TCCAGCTACACCGACCA 146801
|| | || |||||||
Sbjct 50085 TCTCTCCACTCCGACCA 50069
>seq8280
Length=144189
Score = 82.4 bits (90), Expect = 7e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 146724 ACGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGA 146783
|||| | |||||||| ||||||||||||||| ||||||| ||||||||||| ||||| |
Sbjct 26466 ACGGGGCGTAGCGCAGTCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCAGGTTCAA 26407
Query 146784 TTCCAGCTACACCGACCA 146801
||| || | |||||||
Sbjct 26406 ATCCTGCCGCCCCGACCA 26389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477100574872080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |