Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_024359.1 Length=133048 Score E Sequences producing significant alignments: (Bits) Value seq10153 266 3e-66 >seq10153 Length=9971 Score = 266 bits (294), Expect = 3e-66 Identities = 640/963 (66%), Gaps = 4/963 (0%) Strand=Plus/Minus Query 92030 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCATCTTTCTATCGAGCTTACAAAGAG 92089 || || ||| | ||||||||||| |||| ||| || || |||||||| || ||||| ||| Sbjct 7677 AGCGGCATCCTCAACTGGAACGACATTCCGTACCCGTCGTTCTATCGGGCCTACAAGGAG 7618 Query 92090 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGATATGAAGAGCGATGCCAAACAGTAC 92149 | | || || | |||| | || || ||||| || |||||| ||||||| |||||| Sbjct 7617 CTGTCGACCAACTTCTGGATTCCCGACGAGGTCGACATGAAGCTCGATGCCCGCCAGTAC 7558 Query 92150 AACCACTTATCCGAAGAAGAGAAATATGCGTTTGACTCCATTATCGGACTTTTAGCTACA 92209 | | | || | || || | || | ||||| || ||||| || | || || Sbjct 7557 GGCGAGCTCAACGCACGCGAAAAGAACGCCTACGACTCGATCATCGGCCTGCTCGCCACG 7498 Query 92210 CTTGACTCACCCCAAACACGTTTTATTTATAATATCGCAGAGTATGTCAGTGATGCCTCT 92269 || |||||||| || || || || || || || | || ||||| | | || | | Sbjct 7497 CTCGACTCACCGCAGACCCGCTTCATCTACAACGTGGCCGAGTACATTACCGACCCAGCG 7438 Query 92270 GTTCATGCTATTACAGCTATTATTGCACAACAAGAAGCTATTCATAATGAGAGTTATTCT 92329 | ||||| | | |||| || || | || || |||| || || || ||||| || Sbjct 7437 GCGCATGCCAATGCAGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACAGC 7378 Query 92330 TATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTAGA 92389 || || || || || || || || | | | ||||| || | || ||| || | Sbjct 7377 TACGTGCTGGCCTCGATCACCGACCTGCCGAACCAGAACCGCATCTTCGAGATCGCCCGC 7318 Query 92390 ACACACCCTACGATTATTAAACGTAATGCACCTATTATGGAGTCTTATGACGATTTCATG 92449 || ||||| || || || || || || ||||| || |||| | |||||||| |||||| Sbjct 7317 ACCCACCCGACCATCATCAAGCGCAACGCACCGATCATGGGCGCGTATGACGACTTCATG 7258 Query 92450 AATAATAAAACACCTGAGAATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAGGGT 92509 | || || | |||| || | || | | | || || || ||| | || || Sbjct 7257 CGCGAGAAGACCGCCGAGACCCTGCTGAAGTCGCTGATCCAGTCCTCGATCCTGGAAGGC 7198 Query 92510 ATTAATTTCTACAGCGGTTTTGCTTACTTCTATAACCTTGTTCGTCAAAACAAGATGACG 92569 || || ||||| |||||| || |||||||| ||| | || || || ||| |||| Sbjct 7197 ATCAACTTCTATTCCGGTTTCGCCTACTTCTACAACATGGTGCGGCAGAACCGCATGAAC 7138 Query 92570 GGAACAGGTAAAATCATTAGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTTATT 92629 || || || || ||||| |||||||| || || || ||| | || ||| | ||||| || Sbjct 7137 GGCACCGGCAAGATCATCAGCTTCATCAACCGCGACGAGCTGGCGCATACCAAGTTCATC 7078 Query 92630 TCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAAAT 92689 ||| | || | || || | || || |||||||| || || || | || || | Sbjct 7077 AGCGAGTTGATCCGCGCCATCATCGGCGAGAACCCTGAGCTGCAGACCAACGAGCTGACC 7018 Query 92690 GACTACGTGTATGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGC-GTGGTCTAGTGA 92748 | ||||||| | || || ||| || | ||||| || | || |||||| || Sbjct 7017 GCCTACGTGCACCAATCATTCGAACACGCGATCGAGCTGGAG-ACGCAGTGGTCGTCGGA 6959 Query 92749 GGTACTACAGGGCATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATATCG 92808 ||| || | || || || || || || ||||| || ||| | ||| || || || || Sbjct 6958 GGTGCTGGACGGTATCGACGGCATCGACGTGGACGAGATGGTGCGCTACGTGAAGTACCG 6899 Query 92809 TGCTAATAAAATGTTAGGGATGCTAGGTCTCCAACCAATGTATCAAGGTCAT-ACAGAAA 92867 || || || ||| || ||||| || || | | |||| || | || || || | Sbjct 6898 CGCCAACAAGATGGCCGGCATGCTCGGCATCGAGCGCCTGTA-CAGCGACACCACCGACA 6840 Query 92868 ATTCTATGACATGGATTAAAGCTTACGCCGATAATTTTACAGAAACAAAAACCGACTTTT 92927 | ||| | ||||| || || |||||||| || || || ||||| || |||||||| | Sbjct 6839 ACGTGATGCCGTGGATCAAGGCCTACGCCGACAACTTCACCGAAACCAAGACCGACTTCT 6780 Query 92928 TCGAAATGCGTAACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGACTTAT 92987 |||| ||||| || | ||||||||||| || ||| | ||||| || ||||||||| | | Sbjct 6779 TCGAGATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGATGACCTCT 6720 Query 92988 GAG 92990 ||| Sbjct 6719 GAG 6717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425550683681291