Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_024360.1 Length=138036 Score E Sequences producing significant alignments: (Bits) Value seq10153 280 1e-70 >seq10153 Length=9971 Score = 280 bits (310), Expect = 1e-70 Identities = 636/951 (67%), Gaps = 4/951 (0%) Strand=Plus/Minus Query 104780 AACTGGAATGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAGGAGTTAACTACAAAT 104839 |||||||| || |||| ||| ||||| |||||||| || ||||||||| | | || || Sbjct 7665 AACTGGAACGACATTCCGTACCCGTCGTTCTATCGGGCCTACAAGGAGCTGTCGACCAAC 7606 Query 104840 TACTGGTTGCCCGATGAGGTAGATATGAAGAGTGATGCCAAACAGTACAACCACTTACCC 104899 | |||| | ||||| ||||| || |||||| |||||| |||||| | | | | Sbjct 7605 TTCTGGATTCCCGACGAGGTCGACATGAAGCTCGATGCCCGCCAGTACGGCGAGCTCAAC 7546 Query 104900 GAAGAAGAGAAGTATGCGTTTGATTCCATTATTGGACTTTTAGCTACACTTGACTCACCT 104959 | | || ||| | || | || || || || || || | || || || |||||||| Sbjct 7545 GCACGCGAAAAGAACGCCTACGACTCGATCATCGGCCTGCTCGCCACGCTCGACTCACCG 7486 Query 104960 CAAACACGTTTTATTTATAATATCGCAGAATATGTCAGTGATGCCTCTGTTCATGCTATT 105019 || || || || || || || | || || || | | || | | | ||||| | | Sbjct 7485 CAGACCCGCTTCATCTACAACGTGGCCGAGTACATTACCGACCCAGCGGCGCATGCCAAT 7426 Query 105020 ACTGCTATCATTGCACAACAAGAAGCTATTCATAACGAAAGCTACTCTTATGTACTTGCT 105079 | || ||||| | || || |||| || || ||||| |||||| || || || || Sbjct 7425 GCAGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACAGCTACGTGCTGGCC 7366 Query 105080 TCTATTACTAACTTACAGGAGCAGAATCGAGTATTTGAGGAAGCTAGAACACACCCTACG 105139 || || || || | | | | ||||| || | || ||| || | || ||||| || Sbjct 7365 TCGATCACCGACCTGCCGAACCAGAACCGCATCTTCGAGATCGCCCGCACCCACCCGACC 7306 Query 105140 ATTATTAAACGTAATGCACCTATTATGGAGTCTTATGACGATTTCATGAATAATAAAACA 105199 || || || || || ||||| || |||| | |||||||| |||||| | || || Sbjct 7305 ATCATCAAGCGCAACGCACCGATCATGGGCGCGTATGACGACTTCATGCGCGAGAAGACC 7246 Query 105200 CCTGAGAATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAGGGTATTAATTTCTAC 105259 | |||| || | || | | | || || || ||| | || || || || ||||| Sbjct 7245 GCCGAGACCCTGCTGAAGTCGCTGATCCAGTCCTCGATCCTGGAAGGCATCAACTTCTAT 7186 Query 105260 AGCGGTTTTGCTTACTTCTATAACCTCGTTCGTCAAAACAAGATGACAGGGACAGGTAAA 105319 |||||| || |||||||| ||| | || || || ||| |||| || || || || Sbjct 7185 TCCGGTTTCGCCTACTTCTACAACATGGTGCGGCAGAACCGCATGAACGGCACCGGCAAG 7126 Query 105320 ATCATCAGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTTATTTCTGAGCTAATT 105379 |||||||||||||| || || || ||| | || ||| | ||||| || ||| | || Sbjct 7125 ATCATCAGCTTCATCAACCGCGACGAGCTGGCGCATACCAAGTTCATCAGCGAGTTGATC 7066 Query 105380 AGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAAATGACTACGTATAT 105439 | || || | || || |||||||| || || || | || || | | |||||| | Sbjct 7065 CGCGCCATCATCGGCGAGAACCCTGAGCTGCAGACCAACGAGCTGACCGCCTACGTGCAC 7006 Query 105440 GCTTCTTTTAGACATGCTGTAGAGCTAGAACAAGCA-TGGTCTAGTGAGGTACTACAGGG 105498 || || ||| || | ||||| || | ||| ||||| ||||| || | || Sbjct 7005 CAATCATTCGAACACGCGATCGAGCTGGAG-ACGCAGTGGTCGTCGGAGGTGCTGGACGG 6947 Query 105499 CATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATATCGCGCTAATAAAAT 105558 || || || || || ||||| || ||| | ||| || || || ||||| || || || Sbjct 6946 TATCGACGGCATCGACGTGGACGAGATGGTGCGCTACGTGAAGTACCGCGCCAACAAGAT 6887 Query 105559 GTTAGGGATGCTAGGTCTCCAACCAATGTATCAAGGTCAC-ACAGAAAATTCTATGACAT 105617 | || ||||| || || | | |||| || | ||| || || || ||| | | Sbjct 6886 GGCCGGCATGCTCGGCATCGAGCGCCTGTA-CAGCGACACCACCGACAACGTGATGCCGT 6828 Query 105618 GGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGATTTTTTCGAAATGCGTA 105677 |||| || || |||||||| ||||| || ||||| || ||||| || ||||| ||||| | Sbjct 6827 GGATCAAGGCCTACGCCGACAACTTCACCGAAACCAAGACCGACTTCTTCGAGATGCGCA 6768 Query 105678 ACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGACTTATGAG 105728 | | ||||||||||| || ||| | ||||| || ||||||||| | |||| Sbjct 6767 ATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGATGACCTCTGAG 6717 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 103204 GATATAGAAGCCTTTCTGGATTTAAGACTAAACAACGGAGACCAACGTTTACGAGCTCAC 103263 ||||| |||||||| |||| | | || |||||||| ||||| || | || || ||| Sbjct 9161 GATATCGAAGCCTTCATGGACCTGCGCCTCAACAACGGCGACCAGCGCCTGCGCGCGCAC 9102 Query 103264 GACATTTTTACTTCTGTTTCTATTCCTGATTTATTTATGGAAGCTGTAGAGAATAGAGGG 103323 || | || || || || | | || || | || |||||||| || || | | | Sbjct 9101 GATGTGTTCACCTCGGTGTGCGTGCCCGACCTGTTCATGGAAGCGGTCGAACGTCGCGCC 9042 Query 103324 GAATGGTATTTATTTGACCCTTACGAGGTTAAGCAGAAAAAAGGCTGGTACCTACAAGAC 103383 || ||||| | || ||||| ||||||| |||||| || ||||||||||| || ||| Sbjct 9041 GACTGGTACCTGTTCGACCCGCACGAGGTGAAGCAGGCCAAGGGCTGGTACCTGCAGGAC 8982 Query 103384 TACTATGA 103391 | ||| || Sbjct 8981 TTCTACGA 8974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441504076729440