Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_024360.1
Length=138036
Score E
Sequences producing significant alignments: (Bits) Value
seq10153 280 1e-70
>seq10153
Length=9971
Score = 280 bits (310), Expect = 1e-70
Identities = 636/951 (67%), Gaps = 4/951 (0%)
Strand=Plus/Minus
Query 104780 AACTGGAATGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAGGAGTTAACTACAAAT 104839
|||||||| || |||| ||| ||||| |||||||| || ||||||||| | | || ||
Sbjct 7665 AACTGGAACGACATTCCGTACCCGTCGTTCTATCGGGCCTACAAGGAGCTGTCGACCAAC 7606
Query 104840 TACTGGTTGCCCGATGAGGTAGATATGAAGAGTGATGCCAAACAGTACAACCACTTACCC 104899
| |||| | ||||| ||||| || |||||| |||||| |||||| | | | |
Sbjct 7605 TTCTGGATTCCCGACGAGGTCGACATGAAGCTCGATGCCCGCCAGTACGGCGAGCTCAAC 7546
Query 104900 GAAGAAGAGAAGTATGCGTTTGATTCCATTATTGGACTTTTAGCTACACTTGACTCACCT 104959
| | || ||| | || | || || || || || || | || || || ||||||||
Sbjct 7545 GCACGCGAAAAGAACGCCTACGACTCGATCATCGGCCTGCTCGCCACGCTCGACTCACCG 7486
Query 104960 CAAACACGTTTTATTTATAATATCGCAGAATATGTCAGTGATGCCTCTGTTCATGCTATT 105019
|| || || || || || || | || || || | | || | | | ||||| | |
Sbjct 7485 CAGACCCGCTTCATCTACAACGTGGCCGAGTACATTACCGACCCAGCGGCGCATGCCAAT 7426
Query 105020 ACTGCTATCATTGCACAACAAGAAGCTATTCATAACGAAAGCTACTCTTATGTACTTGCT 105079
| || ||||| | || || |||| || || ||||| |||||| || || || ||
Sbjct 7425 GCAGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACAGCTACGTGCTGGCC 7366
Query 105080 TCTATTACTAACTTACAGGAGCAGAATCGAGTATTTGAGGAAGCTAGAACACACCCTACG 105139
|| || || || | | | | ||||| || | || ||| || | || ||||| ||
Sbjct 7365 TCGATCACCGACCTGCCGAACCAGAACCGCATCTTCGAGATCGCCCGCACCCACCCGACC 7306
Query 105140 ATTATTAAACGTAATGCACCTATTATGGAGTCTTATGACGATTTCATGAATAATAAAACA 105199
|| || || || || ||||| || |||| | |||||||| |||||| | || ||
Sbjct 7305 ATCATCAAGCGCAACGCACCGATCATGGGCGCGTATGACGACTTCATGCGCGAGAAGACC 7246
Query 105200 CCTGAGAATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAGGGTATTAATTTCTAC 105259
| |||| || | || | | | || || || ||| | || || || || |||||
Sbjct 7245 GCCGAGACCCTGCTGAAGTCGCTGATCCAGTCCTCGATCCTGGAAGGCATCAACTTCTAT 7186
Query 105260 AGCGGTTTTGCTTACTTCTATAACCTCGTTCGTCAAAACAAGATGACAGGGACAGGTAAA 105319
|||||| || |||||||| ||| | || || || ||| |||| || || || ||
Sbjct 7185 TCCGGTTTCGCCTACTTCTACAACATGGTGCGGCAGAACCGCATGAACGGCACCGGCAAG 7126
Query 105320 ATCATCAGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTTATTTCTGAGCTAATT 105379
|||||||||||||| || || || ||| | || ||| | ||||| || ||| | ||
Sbjct 7125 ATCATCAGCTTCATCAACCGCGACGAGCTGGCGCATACCAAGTTCATCAGCGAGTTGATC 7066
Query 105380 AGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAAATGACTACGTATAT 105439
| || || | || || |||||||| || || || | || || | | |||||| |
Sbjct 7065 CGCGCCATCATCGGCGAGAACCCTGAGCTGCAGACCAACGAGCTGACCGCCTACGTGCAC 7006
Query 105440 GCTTCTTTTAGACATGCTGTAGAGCTAGAACAAGCA-TGGTCTAGTGAGGTACTACAGGG 105498
|| || ||| || | ||||| || | ||| ||||| ||||| || | ||
Sbjct 7005 CAATCATTCGAACACGCGATCGAGCTGGAG-ACGCAGTGGTCGTCGGAGGTGCTGGACGG 6947
Query 105499 CATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATATCGCGCTAATAAAAT 105558
|| || || || || ||||| || ||| | ||| || || || ||||| || || ||
Sbjct 6946 TATCGACGGCATCGACGTGGACGAGATGGTGCGCTACGTGAAGTACCGCGCCAACAAGAT 6887
Query 105559 GTTAGGGATGCTAGGTCTCCAACCAATGTATCAAGGTCAC-ACAGAAAATTCTATGACAT 105617
| || ||||| || || | | |||| || | ||| || || || ||| | |
Sbjct 6886 GGCCGGCATGCTCGGCATCGAGCGCCTGTA-CAGCGACACCACCGACAACGTGATGCCGT 6828
Query 105618 GGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGATTTTTTCGAAATGCGTA 105677
|||| || || |||||||| ||||| || ||||| || ||||| || ||||| ||||| |
Sbjct 6827 GGATCAAGGCCTACGCCGACAACTTCACCGAAACCAAGACCGACTTCTTCGAGATGCGCA 6768
Query 105678 ACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGACTTATGAG 105728
| | ||||||||||| || ||| | ||||| || ||||||||| | ||||
Sbjct 6767 ATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGATGACCTCTGAG 6717
Score = 82.4 bits (90), Expect = 7e-11
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 103204 GATATAGAAGCCTTTCTGGATTTAAGACTAAACAACGGAGACCAACGTTTACGAGCTCAC 103263
||||| |||||||| |||| | | || |||||||| ||||| || | || || |||
Sbjct 9161 GATATCGAAGCCTTCATGGACCTGCGCCTCAACAACGGCGACCAGCGCCTGCGCGCGCAC 9102
Query 103264 GACATTTTTACTTCTGTTTCTATTCCTGATTTATTTATGGAAGCTGTAGAGAATAGAGGG 103323
|| | || || || || | | || || | || |||||||| || || | | |
Sbjct 9101 GATGTGTTCACCTCGGTGTGCGTGCCCGACCTGTTCATGGAAGCGGTCGAACGTCGCGCC 9042
Query 103324 GAATGGTATTTATTTGACCCTTACGAGGTTAAGCAGAAAAAAGGCTGGTACCTACAAGAC 103383
|| ||||| | || ||||| ||||||| |||||| || ||||||||||| || |||
Sbjct 9041 GACTGGTACCTGTTCGACCCGCACGAGGTGAAGCAGGCCAAGGGCTGGTACCTGCAGGAC 8982
Query 103384 TACTATGA 103391
| ||| ||
Sbjct 8981 TTCTACGA 8974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441504076729440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |