Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_024364.1 Length=131952 Score E Sequences producing significant alignments: (Bits) Value seq10153 257 1e-63 >seq10153 Length=9971 Score = 257 bits (284), Expect = 1e-63 Identities = 638/963 (66%), Gaps = 4/963 (0%) Strand=Plus/Plus Query 37996 CTCATAAGTCATCGAACCCATTATCTAAATTTGTTTTCTTGTAACTAGAGTTACGCATTT 38055 |||| | ||||||||| || || || | || || ||||||||||| | || ||||| | Sbjct 6717 CTCAGAGGTCATCGAAGCCGTTGTCGACGTTGGTCTTCTTGTAACTTGCATTGCGCATCT 6776 Query 38056 CGAAAAAGTCGGTTTTTGTTTCTGTAAAGTTATCGGCGTAAGCTTTAATCCATGTCATAG 38115 |||| |||||||| || ||||| || ||||| |||||||| || || ||||| | ||| Sbjct 6777 CGAAGAAGTCGGTCTTGGTTTCGGTGAAGTTGTCGGCGTAGGCCTTGATCCACGGCATCA 6836 Query 38116 AATTTTCTGT-ATGACCTTGATACATTGGTTGGAGACCTAGCATCCCTAACATTTTATTA 38174 || || || || | || |||| | | || || ||||| || ||| || || Sbjct 6837 CGTTGTCGGTGGTGTCGCTG-TACAGGCGCTCGATGCCGAGCATGCCGGCCATCTTGTTG 6895 Query 38175 GCACGATATTTTACATAGTCTAACATTTCTTCCACATCAATTCCTTCAATGCCTTGTAGT 38234 || || || || || ||| | ||| || ||||| || || || || || || | || Sbjct 6896 GCGCGGTACTTCACGTAGCGCACCATCTCGTCCACGTCGATGCCGTCGATACCGTCCAGC 6955 Query 38235 ACCTCACTAGACCA-TGCTTGTTCTAGCTCTACAGCATGTCTAAAAGAAGCATACACGTA 38293 ||||| ||||| ||| | || ||||| | || ||| || || | |||||| Sbjct 6956 ACCTCCGACGACCACTGCGT-CTCCAGCTCGATCGCGTGTTCGAATGATTGGTGCACGTA 7014 Query 38294 GTCATTTAGTTCATCTGTTTGTAGTTCAGGGTTTTCCCCTACAATAGCTCTAATTAGCTC 38353 | | | || || | || || || |||||||| || || | || || | || | ||| Sbjct 7015 GGCGGTCAGCTCGTTGGTCTGCAGCTCAGGGTTCTCGCCGATGATGGCGCGGATCAACTC 7074 Query 38354 AGAAATAAACTTCGAATGGGCTAACTCATCACGATTAATGAAGCTAATGATTTTACCTGT 38413 || ||||| | ||| || | ||| || || || |||||||| ||||| || || || Sbjct 7075 GCTGATGAACTTGGTATGCGCCAGCTCGTCGCGGTTGATGAAGCTGATGATCTTGCCGGT 7134 Query 38414 TCCCGTCATCTTGTTTTGACGAACAAGGTTATAGAAGTAAGCAAAACCGCTGTAGAAATT 38473 || |||| ||| || || || | ||| |||||||| || |||||| ||||| || Sbjct 7135 GCCGTTCATGCGGTTCTGCCGCACCATGTTGTAGAAGTAGGCGAAACCGGAATAGAAGTT 7194 Query 38474 AATACCCTCTAAGATAGATGATTGTACTAAAGCTTTTACCATATTCTCAGGTGTTTTGTT 38533 || || || | ||| || || || | | | || | || |||| | || || | Sbjct 7195 GATGCCTTCCAGGATCGAGGACTGGATCAGCGACTTCAGCAGGGTCTCGGCGGTCTTCTC 7254 Query 38534 ATTCATGAAATCGTCATAAGACTTCATAATAGGTGCATTACGTTTAATAATCGTAGGGTG 38593 |||||| |||||||| | ||| || ||||| || || || || || || ||||| Sbjct 7255 GCGCATGAAGTCGTCATACGCGCCCATGATCGGTGCGTTGCGCTTGATGATGGTCGGGTG 7314 Query 38594 TGTTCTAGCTTCCTCAAATACTCGATTCTGCTCTTGTAAGTTAGTAATAGAAGCAAGTAC 38653 || | || ||| || | || ||||| | | | || || || || || || || Sbjct 7315 GGTGCGGGCGATCTCGAAGATGCGGTTCTGGTTCGGCAGGTCGGTGATCGAGGCCAGCAC 7374 Query 38654 ATAAGAATAACTCTCATTATGAATAGCTTCTTGTTGTGCAATAATAGCTGTAATAGCATG 38713 || || ||||| || || || |||| || || | || || |||| | | ||||| Sbjct 7375 GTAGCTGTAGCTCTCGTTGTGGATCACTTCCTGCTGGCCGATGATCGCTGCATTGGCATG 7434 Query 38714 AACAGAGGCATCACTGACATACTCTGCGATATTATAAATAAAACGTGTTTGGGGTGAGTC 38773 | | | || | | ||||| || | || || || || || || || |||||||| Sbjct 7435 CGCCGCTGGGTCGGTAATGTACTCGGCCACGTTGTAGATGAAGCGGGTCTGCGGTGAGTC 7494 Query 38774 AAGTGTAGCTAAAAGTCCGATAATGGAGTCAAACGCATATTTCTCTTCTTCGGATAAGTG 38833 || || || | || ||||| || ||||| | || | || || | || | | Sbjct 7495 GAGCGTGGCGAGCAGGCCGATGATCGAGTCGTAGGCGTTCTTTTCGCGTGCGTTGAGCTC 7554 Query 38834 GTTGTACTGTTTGGCATCGCTCTTCATATCTACCTCATCAGGCAACCAGTAATTTGTAGT 38893 | |||||| ||||||| |||||| || ||||| || || | |||| | || || | Sbjct 7555 GCCGTACTGGCGGGCATCGAGCTTCATGTCGACCTCGTCGGGAATCCAGAAGTTGGTCGA 7614 Query 38894 TAACTCTTTGTAAGCTCGATAGAAAGATGGATACCGAATATCGTTCCAGTTTACGATACC 38953 | ||| ||||| || |||||||| || || ||| |||| ||||||||||| | ||| || Sbjct 7615 CAGCTCCTTGTAGGCCCGATAGAACGACGGGTACGGAATGTCGTTCCAGTTGAGGATGCC 7674 Query 38954 ACT 38956 || Sbjct 7675 GCT 7677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422044127363187