Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq9587 167 8e-37 >seq9587 Length=50143 Score = 167 bits (184), Expect = 8e-37 Identities = 243/343 (71%), Gaps = 14/343 (4%) Strand=Plus/Minus Query 32780 GCGGAACAGTTCGAACTGCAGCAGGCCGCCAATCAGGCCCTGGCCATCGCCGCGCCCAAA 32839 || || ||| |||| | ||||||||||||| |||||| | ||||| ||||| Sbjct 20956 GCCGAGCAGATCGAGCAGCAGCAGGCCGCC---------CTGGCCCTGGCCGCTCCCAAG 20906 Query 32840 GCCGAGTTCGTAGACAAGTACGTCGAGTCCACCGGCCTCAAGGGCTTCCGTCAAACCGCC 32899 ||||||| || ||| ||||| | ||| |||| ||||||||||| || ||| Sbjct 20905 GCCGAGTATGTGGACCGCTACGTGGCCGCCAACGGCGCGAAGGGCTTCCGCCAGGTGGCC 20846 Query 32900 AAGCTGCTGGGTGCTAATGAGGCCCGCTTCCGCGAGTTCCTGCTTGATCGCCGGATCATG 32959 ||||||||||| || || ||| ||||||| | |||| || ||||||| Sbjct 20845 AAGCTGCTGGGCGCGAACGAGCATGAGTTCCGCGCCTGGCTGCAGGACGAAAAGATCATG 20786 Query 32960 TACCGCATGGGCGGGGAATGGCAGGCCTACCAGAACCACGTTGACGCAGGCCGCTTTGAA 33019 |||||| ||||||| |||||| || ||||| |||| | ||||| |||||||||| Sbjct 20785 TACCGCCTGGGCGGCGAATGGACTGCGCACCAGTGCCACATCGACGCTGGCCGCTTTGTC 20726 Query 33020 GTGAAGACCGGC----ACCACTGACGGCGGGCACGCATTCAACCAAGCCAAATTCACCCC 33075 |||||||| ||| |||| | | || ||||| |||||| | || |||||||| Sbjct 20725 GTGAAGACTGGCGTGGCCCAC-GTCAACGATCACGCCTTCAACGCCACGAAGTTCACCCC 20667 Query 33076 CAAGGGCGTCAACTGGATTGCCGGTCTGTGGGCTCAGTACAAG 33118 ||||||||| || ||| | ||||| ||||||| ||| || || Sbjct 20666 CAAGGGCGTGAATTGGGTGGCCGGCCTGTGGGGCCAGCACCAG 20624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163337185901416