Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq899 163 6e-35 seq6889 149 1e-30 seq8560 147 4e-30 seq504 136 8e-27 seq3764 134 3e-26 seq9216 127 4e-24 seq5233 118 2e-21 seq11974 113 9e-20 seq14023 104 5e-17 seq711 102 2e-16 >seq899 Length=2520420 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| ||||| || ||||||||||| || |||||||| || || || ||||| Sbjct 2264401 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 2264460 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| || |||||||| || || || || ||||| || Sbjct 2264461 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 2264520 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || || || ||||| ||||| || || || || || || || ||| | || || || Sbjct 2264521 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 2264580 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| ||||| ||||| || || |||||||| Sbjct 2264581 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | || || || | ||||||||| || |||||||| || || || ||||| Sbjct 2265314 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2265373 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| || |||||||| | || ||||| ||||| || Sbjct 2265374 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGG 2265433 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| ||||| | || ||||| || || || ||| | || || || Sbjct 2265434 ATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTTGGCTCCACC 2265493 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||| || || || || || | ||||||||||| ||||||||| Sbjct 2265494 TCCAGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 2265541 >seq6889 Length=11136585 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||| ||||| | |||||| || || || ||||| || || ||||||| Sbjct 1034235 TACCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAG 1034294 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || |||||||| || || || || || || | Sbjct 1034295 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGG 1034354 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || ||||| || || || ||| | || || | Sbjct 1034355 GAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCA 1034414 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| || || |||||||| |||| || || || || || |||||| Sbjct 1034415 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATT 1034464 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||| | || | |||||| || || |||||||| || || ||||||| Sbjct 1034007 TACCACCCCTCAGACGGACTACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 1034066 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | | ||||| || || || || |||||||| || || || || || || | Sbjct 1034067 AAAGAGTGCGGCAATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGG 1034126 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || || || || || || ||| | || |||| Sbjct 1034127 GAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTA 1034186 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 1034187 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | |||||| || || |||||||| || || |||||||| Sbjct 1033781 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 1033840 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || |||||||| || || || || || || || Sbjct 1033841 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1033900 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || || || | || ||| | || ||| | Sbjct 1033901 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGGTGGTGTCACTGGGCTCTTCC 1033960 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || | |||||| |||| ||||| || || |||||||| Sbjct 1033961 TCCAGGGTGATGGCCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007 >seq8560 Length=3069389 Score = 147 bits (162), Expect = 4e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || ||||| || || || || || || || ||||| | | | | || ||||| Sbjct 2390283 ACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 2390224 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| |||||||||||||| |||||||| || || ||||| |||||||||||||| || Sbjct 2390223 ACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGAATTCCTTCCTTATCCTGG 2390165 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| | |||||| ||| || |||||| || || || | | ||| || ||||| Sbjct 2390164 ATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAGTGATGGTCTTC 2390105 Query 82782 CCTGTCAA-CGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| |||||||| Sbjct 2390104 CCTGTCAAGAGTCTTCACAAAAATCTGCAT 2390075 >seq504 Length=1076656 Score = 136 bits (150), Expect = 8e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| | || || || || || || ||||| | | | | || ||||| ||||| || Sbjct 268477 AGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTG 268418 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||||||| || || ||||| |||||||||||||| || ||||| | Sbjct 268417 CCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGGC 268358 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||| ||||| | ||||| || || || || | ||| || ||||| ||||||| Sbjct 268357 TTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTGATGGTCTTCCCTGTCAGG 268298 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 268297 GTCTTCACGAAAATCTGCAT 268278 >seq3764 Length=1885950 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || ||||| | | | | || ||||| Sbjct 1780300 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 1780241 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||| ||||||| |||||||| || || ||||| |||||||||||||| || Sbjct 1780240 AGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 1780181 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||| | || ||||| || || || || | ||| || ||||| Sbjct 1780180 ATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTC 1780121 Query 82782 CCTGTCAACGTCTTTACAAATATCTGC 82808 || ||| ||||| || || |||||| Sbjct 1780120 CCCCTCAGGGTCTTCACGAAAATCTGC 1780094 >seq9216 Length=6899875 Score = 127 bits (140), Expect = 4e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| | || || || || || || ||||| | | | | || ||||| ||||| || Sbjct 1291522 AGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTG 1291463 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||||||| || || ||| | |||||||||||||| || ||||| || Sbjct 1291462 CCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCCTTCCTTATCCTGGATCTTGGCC 1291403 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||| | || ||||| || | || || | ||| || ||||| |||||| Sbjct 1291402 TTTACATTTACTATTGTATCCGAGGGCTTGACCTCAAGAGTGATGGTCTTCACTGTCAGG 1291343 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| | || |||||||| Sbjct 1291342 GTCTTCATGAAAATCTGCAT 1291323 >seq5233 Length=2008183 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| | ||| || ||||||||||| |||||||| ||||| ||||| ||||||| Sbjct 1606586 CCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTT 1606645 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||||||| ||||| || ||||||||||| || | ||| |||| ||||| ||| Sbjct 1606646 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTG 1606705 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| | ||||| ||||| | || |||||||| Sbjct 1606706 ATGGACTTTCTTGTCAGGGTCTTCATGAAAATCTGCAT 1606743 >seq11974 Length=740964 Score = 113 bits (124), Expect = 9e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| || || || || || || || ||||| | | | | || |||| ||||| || Sbjct 250263 AGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTTCAGTTGCTTG 250204 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||||||| || || ||||| |||||||||| | || | ||| | Sbjct 250203 CCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCCTTACCCTGGACCTTGACC 250144 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||| || | ||| || || || || ||| || ||||| || |||| Sbjct 250143 TTTACATTTTCTATGGGATCCAAGGGCTCGACCTCAGGAGTGATGGTCTTCCCCGTCAGG 250084 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 250083 GTCTTCACGAAAATCTGCAT 250064 >seq14023 Length=4856233 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| |||||||||||| || || || || || ||||||||||| || || ||| Sbjct 1735699 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 1735640 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | ||||| |||||||| | ||| |||||||| || Sbjct 1735639 AAGAAAAACAACCAAGTCTCTTTCCTCCACGTGTATCATCACTGTACCATGTTTACGTTG 1735580 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | || ||||| ||| |||| || || || Sbjct 1735579 TGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 1735545 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368 |||||||||| ||||| ||| |||||||||| |||||||| |||||||| | || |||| Sbjct 1734393 AAGCATTTTTTGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTCATACTATG 1734334 Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428 | | || || | || || | || | || ||| | ||||||||||| || || || | Sbjct 1734333 GGTTAGCTGCCTTCGGCCCGTGGATTCAGAAATATCTCTGGTGGAAGCGATACCTGACCA 1734274 Query 60429 TAATGCA 60435 | |||| Sbjct 1734273 TGCTGCA 1734267 >seq711 Length=9888423 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || |||||| ||| |||||||| || || ||||| | |||||| Sbjct 1101938 CCATCTTCCAGTTGCTTGCCAGCAGCGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCC 1101879 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||| || ||||| || ||||||||||| || ||||| || | || | | || Sbjct 1101878 TTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAGAG 1101819 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || |||| ||||||| || || ||||| |||||||| || Sbjct 1101818 ATGCTCTTCCCTGTCAGGGTTTTCACAAAAATCTGCATCAT 1101778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981637762885001