Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq899 163 6e-35
seq6889 149 1e-30
seq8560 147 4e-30
seq504 136 8e-27
seq3764 134 3e-26
seq9216 127 4e-24
seq5233 118 2e-21
seq11974 113 9e-20
seq14023 104 5e-17
seq711 102 2e-16
>seq899
Length=2520420
Score = 163 bits (180), Expect = 6e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
|||||| ||||| ||||| || ||||||||||| || |||||||| || || || |||||
Sbjct 2264401 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 2264460
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | || ||||| || ||||| || |||||||| || || || || ||||| ||
Sbjct 2264461 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 2264520
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| || || || ||||| ||||| || || || || || || || ||| | || || ||
Sbjct 2264521 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 2264580
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || || |||||||| ||||| ||||| || || ||||||||
Sbjct 2264581 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628
Score = 145 bits (160), Expect = 1e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| ||||| | || || || | ||||||||| || |||||||| || || || |||||
Sbjct 2265314 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2265373
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || ||||| || |||||||| | || ||||| ||||| ||
Sbjct 2265374 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGG 2265433
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||| || ||||| ||||| | || ||||| || || || ||| | || || ||
Sbjct 2265434 ATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTTGGCTCCACC 2265493
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||| ||| || || || || || | ||||||||||| |||||||||
Sbjct 2265494 TCCAGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 2265541
>seq6889
Length=11136585
Score = 149 bits (164), Expect = 1e-30
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || |||| ||| ||||| | |||||| || || || ||||| || || |||||||
Sbjct 1034235 TACCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAG 1034294
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | || ||||| || || || || |||||||| || || || || || || |
Sbjct 1034295 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGG 1034354
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||||||||| || ||||| || || ||||| || || || ||| | || || |
Sbjct 1034355 GAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCA 1034414
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
| |||| || || |||||||| |||| || || || || || ||||||
Sbjct 1034415 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATT 1034464
Score = 147 bits (162), Expect = 4e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || |||| ||| | || | |||||| || || |||||||| || || |||||||
Sbjct 1034007 TACCACCCCTCAGACGGACTACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 1034066
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | | ||||| || || || || |||||||| || || || || || || |
Sbjct 1034067 AAAGAGTGCGGCAATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGG 1034126
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||||||||| || ||||| || || || || || || || ||| | || ||||
Sbjct 1034127 GAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTA 1034186
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| |||| || || |||||||| |||| ||||| || || ||||||||
Sbjct 1034187 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || || | ||| || || | |||||| || || |||||||| || || ||||||||
Sbjct 1033781 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 1033840
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || ||||| || || || || |||||||| || || || || || || ||
Sbjct 1033841 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1033900
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||||||||| || ||||| || || || || || | || ||| | || ||| |
Sbjct 1033901 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGGTGGTGTCACTGGGCTCTTCC 1033960
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || || | |||||| |||| ||||| || || ||||||||
Sbjct 1033961 TCCAGGGTGATGGCCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007
>seq8560
Length=3069389
Score = 147 bits (162), Expect = 4e-30
Identities = 160/210 (76%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
||||| || ||||| || || || || || || || ||||| | | | | || |||||
Sbjct 2390283 ACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 2390224
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
| ||| |||||||||||||| |||||||| || || ||||| |||||||||||||| ||
Sbjct 2390223 ACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGAATTCCTTCCTTATCCTGG 2390165
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
||||| | |||||| ||| || |||||| || || || | | ||| || |||||
Sbjct 2390164 ATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAGTGATGGTCTTC 2390105
Query 82782 CCTGTCAA-CGTCTTTACAAATATCTGCAT 82810
|||||||| ||||| ||||| ||||||||
Sbjct 2390104 CCTGTCAAGAGTCTTCACAAAAATCTGCAT 2390075
>seq504
Length=1076656
Score = 136 bits (150), Expect = 8e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670
||||| | || || || || || || ||||| | | | | || ||||| ||||| ||
Sbjct 268477 AGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTG 268418
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
||||||||||| |||||||| || || ||||| |||||||||||||| || ||||| |
Sbjct 268417 CCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGGC 268358
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||| ||||| | ||||| || || || || | ||| || ||||| |||||||
Sbjct 268357 TTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTGATGGTCTTCCCTGTCAGG 268298
Query 82791 GTCTTTACAAATATCTGCAT 82810
||||| || || ||||||||
Sbjct 268297 GTCTTCACGAAAATCTGCAT 268278
>seq3764
Length=1885950
Score = 134 bits (148), Expect = 3e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|||| || ||||| || || || || || || || ||||| | | | | || |||||
Sbjct 1780300 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 1780241
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
||||| || ||| ||||||| |||||||| || || ||||| |||||||||||||| ||
Sbjct 1780240 AGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 1780181
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
||||| || ||||||||| | || ||||| || || || || | ||| || |||||
Sbjct 1780180 ATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTC 1780121
Query 82782 CCTGTCAACGTCTTTACAAATATCTGC 82808
|| ||| ||||| || || ||||||
Sbjct 1780120 CCCCTCAGGGTCTTCACGAAAATCTGC 1780094
>seq9216
Length=6899875
Score = 127 bits (140), Expect = 4e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670
||||| | || || || || || || ||||| | | | | || ||||| ||||| ||
Sbjct 1291522 AGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTG 1291463
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
||||||||||| |||||||| || || ||| | |||||||||||||| || ||||| ||
Sbjct 1291462 CCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCCTTCCTTATCCTGGATCTTGGCC 1291403
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||||||| | || ||||| || | || || | ||| || ||||| ||||||
Sbjct 1291402 TTTACATTTACTATTGTATCCGAGGGCTTGACCTCAAGAGTGATGGTCTTCACTGTCAGG 1291343
Query 82791 GTCTTTACAAATATCTGCAT 82810
||||| | || ||||||||
Sbjct 1291342 GTCTTCATGAAAATCTGCAT 1291323
>seq5233
Length=2008183
Score = 118 bits (130), Expect = 2e-21
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| ||||| | ||| || ||||||||||| |||||||| ||||| ||||| |||||||
Sbjct 1606586 CCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTT 1606645
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
|||||||| ||||| || ||||||||||| || | ||| |||| ||||| |||
Sbjct 1606646 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTG 1606705
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||| | ||||| ||||| | || ||||||||
Sbjct 1606706 ATGGACTTTCTTGTCAGGGTCTTCATGAAAATCTGCAT 1606743
>seq11974
Length=740964
Score = 113 bits (124), Expect = 9e-20
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670
||||| || || || || || || || ||||| | | | | || |||| ||||| ||
Sbjct 250263 AGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTTCAGTTGCTTG 250204
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
||||||||||| |||||||| || || ||||| |||||||||| | || | ||| |
Sbjct 250203 CCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCCTTACCCTGGACCTTGACC 250144
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||||||||| || | ||| || || || || ||| || ||||| || ||||
Sbjct 250143 TTTACATTTTCTATGGGATCCAAGGGCTCGACCTCAGGAGTGATGGTCTTCCCCGTCAGG 250084
Query 82791 GTCTTTACAAATATCTGCAT 82810
||||| || || ||||||||
Sbjct 250083 GTCTTCACGAAAATCTGCAT 250064
>seq14023
Length=4856233
Score = 104 bits (114), Expect = 5e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214
|||||||||| |||||||||||| || || || || || ||||||||||| || || |||
Sbjct 1735699 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 1735640
Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274
|| || || || || ||| | ||||| |||||||| | ||| |||||||| ||
Sbjct 1735639 AAGAAAAACAACCAAGTCTCTTTCCTCCACGTGTATCATCACTGTACCATGTTTACGTTG 1735580
Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309
| ||| | || ||||| ||| |||| || || ||
Sbjct 1735579 TGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 1735545
Score = 86.0 bits (94), Expect = 1e-11
Identities = 95/127 (75%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368
|||||||||| ||||| ||| |||||||||| |||||||| |||||||| | || ||||
Sbjct 1734393 AAGCATTTTTTGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTCATACTATG 1734334
Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428
| | || || | || || | || | || ||| | ||||||||||| || || || |
Sbjct 1734333 GGTTAGCTGCCTTCGGCCCGTGGATTCAGAAATATCTCTGGTGGAAGCGATACCTGACCA 1734274
Query 60429 TAATGCA 60435
| ||||
Sbjct 1734273 TGCTGCA 1734267
>seq711
Length=9888423
Score = 102 bits (112), Expect = 2e-16
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| ||||| ||||| || |||||| ||| |||||||| || || ||||| | ||||||
Sbjct 1101938 CCATCTTCCAGTTGCTTGCCAGCAGCGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCC 1101879
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
|||| || ||||| || ||||||||||| || ||||| || | || | | ||
Sbjct 1101878 TTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAGAG 1101819
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813
|| |||| ||||||| || || ||||| |||||||| ||
Sbjct 1101818 ATGCTCTTCCCTGTCAGGGTTTTCACAAAAATCTGCATCAT 1101778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981637762885001
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