Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6889 132 5e-26 seq12661 131 2e-25 seq899 122 8e-23 seq9853 104 2e-17 seq504 86.0 6e-12 seq9630 84.2 2e-11 >seq6889 Length=11136585 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || |||||||| | ||| | || || ||||||||||| Sbjct 1034038 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCAATCTTCCAGCTGCTTGCC 1034097 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| || || ||||||||||| || |||||| ||| Sbjct 1034098 GGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 1034157 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| ||||||| || || | ||||| ||| ||||||||||| || Sbjct 1034158 CACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 1034217 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1034218 CTTCACGAAGATCTGCAT 1034235 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 1034266 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1034324 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||||||||| || |||||| || Sbjct 1034325 CGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 1034384 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 1034385 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 1034444 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| Sbjct 1034445 TTTTCACGAAGATTTGCAT 1034463 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 1033810 GGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1033868 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||||||||| || |||||| || Sbjct 1033869 CGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 1033928 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| ||||| ||||||| | || | ||||| || ||||||||||| | Sbjct 1033929 TCACGTTCTCGGTGGTGTCACTGGGCTCTTCCTCCAGGGTGATGGCCTTGCCGGTCAGGG 1033988 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 1033989 TCTTCACGAAGATCTGCAT 1034007 >seq12661 Length=3984070 Score = 131 bits (144), Expect = 2e-25 Identities = 152/200 (76%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| |||||||| || || ||| | | | ||||| ||||| |||| Sbjct 2676652 GGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCA-TCCTCCAGCTGTTTGC 2676594 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 |||| | || || | ||||||||| || |||||||| |||||||| ||| ||| || Sbjct 2676593 CCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT-TTTGGCT 2676535 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | |||| ||||| ||||||| || || | ||||| ||| ||||| ||||| Sbjct 2676534 TTGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGG 2676475 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 2676474 GTCTTCACAAAGATCTGCAT 2676455 >seq899 Length=2520420 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 2264432 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 2264491 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || |||||||| || ||||| |||||| |||| Sbjct 2264492 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 2264551 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| ||||| |||| || Sbjct 2264552 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 2264611 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 2264612 TTCACGAAGATCTGCAT 2264628 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 2264660 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 2264719 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || |||||||| || ||||| |||||| |||| Sbjct 2264720 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 2264779 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| ||||| |||| || Sbjct 2264780 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 2264839 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 2264840 TTCACGAAGATCTGCAT 2264856 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 2264888 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 2264947 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || |||||||| || ||||| |||||| |||| Sbjct 2264948 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 2265007 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| ||||| |||| || Sbjct 2265008 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 2265067 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 2265068 TTCACGAAGATCTGCAT 2265084 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || ||||| || || Sbjct 2265116 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGTTTCCC 2265174 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| || ||||| |||||| ||| Sbjct 2265175 GGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTT 2265234 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | ||||| ||| ||||| |||| || Sbjct 2265235 GACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCCGTCAAGGT 2265294 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 2265295 CTTCACGAAGATCTGCAT 2265312 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 2265344 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 2265403 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||| ||||| || ||||||||||| || || ||||| |||| Sbjct 2265404 GCAAAGATCAACCTCTGTTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCACCTTG 2265463 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | |||||||| || | || | |||||| || || || || Sbjct 2265464 ACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGAGTAATGGTTTTACCAGTGAGGGTC 2265523 Query 133644 TTTACGAAAATCTGCAT 133660 ||||| || |||||||| Sbjct 2265524 TTTACAAAGATCTGCAT 2265540 >seq9853 Length=4041771 Score = 104 bits (114), Expect = 2e-17 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||| |||||||||| |||||||| || || ||| | | | |||| ||||| |||| Sbjct 359812 GGTGAACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCA-TCCTGCAGCTGTTTGC 359870 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | | | | || || ||||||||||| || |||||||| |||| ||| ||| ||| || Sbjct 359871 CGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGAT-TTTGGCT 359929 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| |||| ||||| ||||||| || || | |||| ||| ||||| |||| Sbjct 359930 TTGACACTTTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCATCAGC 359989 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 359990 GTCTTCACAAAGATCTGCAT 360009 >seq504 Length=1076656 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || |||||||| || | || || | |||||||| ||||| || |||||||| Sbjct 268432 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 268373 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| |||| | | || || || | |||||| ||||| | |||| | Sbjct 268372 TCCTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTGATG 268313 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| || || |||||||||||||| Sbjct 268312 GTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 268278 >seq9630 Length=1439052 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG----TCCTC 133510 ||||| | |||| |||||||||| || ||||| || || | | || || ||||| Sbjct 545483 AAATGCAGGGTGAACTCTTTCTGGATTTTGTAGTCTGACA--GAGCAC-AGCCCATCCTC 545539 Query 133511 GAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGT 133570 ||||| |||| ||| ||| || |||||||||| || |||||||||||| || Sbjct 545540 -AGCTGTTTGCTCGCAAAAACTAGATGCTGCTGGTCAGGGAGGATGCCTTCCTGATCATG 545598 Query 133571 GATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTT 133630 ||| || |||| | ||||| ||||| |||||| || || ||||| | | || Sbjct 545599 GATTTTAAATTTGACGTTCTCAATGGTGTCACTGGGCTTGACCTCAGGGGTGATGATCTT 545658 Query 133631 GCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||| || || || |||||| |||| Sbjct 545659 GCCCTTCAGGGTCTTCACAAAAATCAGCAT 545688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483329802077160