Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq8265 257 2e-63 seq13007 206 3e-48 seq889 82.4 9e-11 >seq8265 Length=5675935 Score = 257 bits (284), Expect = 2e-63 Identities = 658/997 (66%), Gaps = 15/997 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 2374246 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 2374305 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| ||| ||| || | || | ||| || | ||| || | Sbjct 2374306 TGTCGAATTTGTTGGCAAACAAGTGGTGCACGTGC---AACAGCCAGTTCAAATCACCAG 2374362 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| |||||||| || |||||||| ||||||| ||||||||| || |||| || | Sbjct 2374363 CTCCGAAAACGCACACAGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCT 2374422 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||| || || ||||| | || || |||||||| | Sbjct 2374423 TGGAAACGTCTCCTTCAAAGTACTGCCATTTCACAAACCTGGCAATCGCTTGCATGTCAG 2374482 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||| | | | | || | || || || | || | ||||| | || Sbjct 2374483 ACATGTCATACTTTTGGCTTAAGGACAATGACCCTGGGACTTCGGGGATCCTCTGAATAG 2374542 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || ||||| || || || || || | ||||||||| |||| || Sbjct 2374543 TGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGA 2374602 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| | | || | ||| || || ||| | || | || || || || | Sbjct 2374603 TATTTTGGTTCTGGAGCACGTACTCCACATATTCCCTACTGACCACGAAATAGGCACTGC 2374662 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | ||| || | |||||| ||| |||| | | Sbjct 2374663 CTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTCCCCATGTTTGTCAGCT 2374722 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT- 162597 |||| | ||||| | | ||| ||||||| | ||||| ||| || || | Sbjct 2374723 TTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTCTTA-TGG--GATGGCATTC 2374779 Query 162598 --TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 || || ||||| |||| ||| ||| ||| |||| | || || || || | Sbjct 2374780 TCTCCGTTTCTAGGTTGTTCTCGCCCATCAACAGCTTGAGCTTCCTGACAATTTCCAGGT 2374839 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 |||| |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 2374840 TGGTTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGCCTGCATTCA 2374899 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 | ||| || ||||| | ||||| || || ||||| || || ||||| || || |||| Sbjct 2374900 TCCGGTAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGATGCATACA 2374959 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | |||||||||| | | |||||||||||||||| ||| || || | || || || Sbjct 2374960 CCACGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAATAG 2375019 Query 162836 CGGC---CAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892 | || || || | || || | ||| ||||| ||||| || || || | ||||| Sbjct 2375020 CTGCAGCCAAAAAGGATTTC---TCTGATTTTCTATCCACGTGAACACAATAGAAATTCT 2375076 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 |||| |||||||||||||| | || || | ||| || || || || || ||||| | Sbjct 2375077 GAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTA 2375136 Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGC 163012 ||||||| ||||| || || || ||||| || ||| || | || ||| || |||| Sbjct 2375137 TAGAATATGCTATTGGAAATTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGC 2375196 Query 163013 GGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 | | | | | || | ||||| || | |||||||| Sbjct 2375197 GCTTCTTGATGAAAGAAGCACAATCACCAGTCATGTT 2375233 >seq13007 Length=1899925 Score = 206 bits (228), Expect = 3e-48 Identities = 239/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| |||||||| | | Sbjct 1648720 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 1648661 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || || |||| |||||||||||| || || | || || || ||| Sbjct 1648660 ACTTGTAACACGCCTCATCTTCCAAGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCATGA 1648601 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 | || || || || ||||| | | ||||||||| | ||||||||| ||||| || || | Sbjct 1648600 GCCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGT 1648541 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 1648540 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 1648481 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | |||| ||||||||||||||||||||||||||||||| | Sbjct 1648480 TCAAAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCC 1648421 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 1648420 CTCTTACATCCTGGGTCACCAC 1648399 Score = 116 bits (128), Expect = 4e-21 Identities = 175/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 1651559 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 1651502 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || || || || ||||| | || || ||||| | |||||||| || || Sbjct 1651501 -TCCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGATGACAGATGTTGTTCCA 1651443 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| ||| | | ||||| || || || || || || | |||||||| | Sbjct 1651442 TTGGGGTGTGAGACGATCTCGGTACTGTTCTCAATCCCCGACCCAGAGACTTTCCAGGAG 1651383 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | ||| ||||| | |||| | ||||||||||| || |||| |||||| | || Sbjct 1651382 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGATCTTCAGATAAT 1651323 Query 171743 TCATAGTG 171750 | |||||| Sbjct 1651322 TTATAGTG 1651315 >seq889 Length=2431656 Score = 82.4 bits (90), Expect = 9e-11 Identities = 223/336 (66%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | ||| ||||| || || || ||| | | |||||| Sbjct 2151227 ACCATCTCGGCATTGGTCTTTATGGGGAAGTCTGTCCCACATGTATTCAGTAAGTATTTC 2151286 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | | ||| || | | || || | | ||||||||| |||||||| || | Sbjct 2151287 CA--TGGCACCGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCGGCCTGCACTCTGG 2151344 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || ||||| || |||| | ||||||||| ||| || | Sbjct 2151345 ACCAGGAGGCATAAACCACAGGGACCAACTTACTGGCCATGAAGACATTGGGGAAGCAGG 2151404 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | ||| ||| || || || Sbjct 2151405 AAATAATGGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCACATCCACATGGAC 2151462 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 ||||||| ||||||||||| || | || | ||| || | || || | || ||||| Sbjct 2151463 ACAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAACCGTTCAAAGTTTTCAATCTT 2151522 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| || || || || |||||||| || Sbjct 2151523 CTCATGGACCACCATCGAGTATGCAATGGGGAAGTC 2151558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578323117406400