Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq8265 257 2e-63
seq13007 206 3e-48
seq889 82.4 9e-11
>seq8265
Length=5675935
Score = 257 bits (284), Expect = 2e-63
Identities = 658/997 (66%), Gaps = 15/997 (2%)
Strand=Plus/Plus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| ||| || | |||||||| || || | ||| |||
Sbjct 2374246 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 2374305
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
||||| ||||| || |||| ||| ||| || | || | ||| || | ||| || |
Sbjct 2374306 TGTCGAATTTGTTGGCAAACAAGTGGTGCACGTGC---AACAGCCAGTTCAAATCACCAG 2374362
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
|||||| |||||||| || |||||||| ||||||| ||||||||| || |||| || |
Sbjct 2374363 CTCCGAAAACGCACACAGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCT 2374422
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| || || || || |||| ||||| || || ||||| | || || |||||||| |
Sbjct 2374423 TGGAAACGTCTCCTTCAAAGTACTGCCATTTCACAAACCTGGCAATCGCTTGCATGTCAG 2374482
Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| |||| ||||| | | | | || | || || || | || | ||||| | ||
Sbjct 2374483 ACATGTCATACTTTTGGCTTAAGGACAATGACCCTGGGACTTCGGGGATCCTCTGAATAG 2374542
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| ||||| || | || ||||| || || || || || | ||||||||| |||| ||
Sbjct 2374543 TGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGA 2374602
Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478
||| | | || | ||| || || ||| | || | || || || || |
Sbjct 2374603 TATTTTGGTTCTGGAGCACGTACTCCACATATTCCCTACTGACCACGAAATAGGCACTGC 2374662
Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538
| ||||||| ||| | | ||| || | |||||| ||| |||| | |
Sbjct 2374663 CTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTCCCCATGTTTGTCAGCT 2374722
Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT- 162597
|||| | ||||| | | ||| ||||||| | ||||| ||| || || |
Sbjct 2374723 TTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTCTTA-TGG--GATGGCATTC 2374779
Query 162598 --TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655
|| || ||||| |||| ||| ||| ||| |||| | || || || || |
Sbjct 2374780 TCTCCGTTTCTAGGTTGTTCTCGCCCATCAACAGCTTGAGCTTCCTGACAATTTCCAGGT 2374839
Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715
|||| |||| ||||| || | ||||||||||| || | || ||||| | | |
Sbjct 2374840 TGGTTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGCCTGCATTCA 2374899
Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775
| ||| || ||||| | ||||| || || ||||| || || ||||| || || ||||
Sbjct 2374900 TCCGGTAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGATGCATACA 2374959
Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835
| |||||||||| | | |||||||||||||||| ||| || || | || || ||
Sbjct 2374960 CCACGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAATAG 2375019
Query 162836 CGGC---CAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892
| || || || | || || | ||| ||||| ||||| || || || | |||||
Sbjct 2375020 CTGCAGCCAAAAAGGATTTC---TCTGATTTTCTATCCACGTGAACACAATAGAAATTCT 2375076
Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952
|||| |||||||||||||| | || || | ||| || || || || || ||||| |
Sbjct 2375077 GAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTA 2375136
Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGC 163012
||||||| ||||| || || || ||||| || ||| || | || ||| || ||||
Sbjct 2375137 TAGAATATGCTATTGGAAATTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGC 2375196
Query 163013 GGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049
| | | | | || | ||||| || | ||||||||
Sbjct 2375197 GCTTCTTGATGAAAGAAGCACAATCACCAGTCATGTT 2375233
>seq13007
Length=1899925
Score = 206 bits (228), Expect = 3e-48
Identities = 239/322 (74%), Gaps = 0/322 (0%)
Strand=Plus/Minus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| || || |||| | || || || ||||| || ||||| |||||||| | |
Sbjct 1648720 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 1648661
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|| | |||| | || || |||| |||||||||||| || || | || || || |||
Sbjct 1648660 ACTTGTAACACGCCTCATCTTCCAAGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCATGA 1648601
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
| || || || || ||||| | | ||||||||| | ||||||||| ||||| || || |
Sbjct 1648600 GCCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGT 1648541
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
|||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || |
Sbjct 1648540 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 1648481
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| |||||||| | | |||| ||||||||||||||||||||||||||||||| |
Sbjct 1648480 TCAAAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCC 1648421
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
| ||| | || || || |||||
Sbjct 1648420 CTCTTACATCCTGGGTCACCAC 1648399
Score = 116 bits (128), Expect = 4e-21
Identities = 175/248 (71%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| ||||
Sbjct 1651559 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 1651502
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| ||||| || || || || ||||| | || || ||||| | |||||||| || ||
Sbjct 1651501 -TCCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGATGACAGATGTTGTTCCA 1651443
Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682
|| | ||| ||| | | ||||| || || || || || || | |||||||| |
Sbjct 1651442 TTGGGGTGTGAGACGATCTCGGTACTGTTCTCAATCCCCGACCCAGAGACTTTCCAGGAG 1651383
Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742
|| | ||| ||||| | |||| | ||||||||||| || |||| |||||| | ||
Sbjct 1651382 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGATCTTCAGATAAT 1651323
Query 171743 TCATAGTG 171750
| ||||||
Sbjct 1651322 TTATAGTG 1651315
>seq889
Length=2431656
Score = 82.4 bits (90), Expect = 9e-11
Identities = 223/336 (66%), Gaps = 8/336 (2%)
Strand=Plus/Plus
Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702
|||||||| ||||||||| | ||| ||||| || || || ||| | | ||||||
Sbjct 2151227 ACCATCTCGGCATTGGTCTTTATGGGGAAGTCTGTCCCACATGTATTCAGTAAGTATTTC 2151286
Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760
|| | | | ||| || | | || || | | ||||||||| |||||||| || |
Sbjct 2151287 CA--TGGCACCGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCGGCCTGCACTCTGG 2151344
Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820
||| || || || || || ||||| || |||| | ||||||||| ||| || |
Sbjct 2151345 ACCAGGAGGCATAAACCACAGGGACCAACTTACTGGCCATGAAGACATTGGGGAAGCAGG 2151404
Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878
||| || || | || ||| | ||| | | || | ||| ||| || || ||
Sbjct 2151405 AAATAATGGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCACATCCACATGGAC 2151462
Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938
||||||| ||||||||||| || | || | ||| || | || || | || |||||
Sbjct 2151463 ACAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAACCGTTCAAAGTTTTCAATCTT 2151522
Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974
| || ||||| || || || || |||||||| ||
Sbjct 2151523 CTCATGGACCACCATCGAGTATGCAATGGGGAAGTC 2151558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578323117406400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |