Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_024785.1 Length=44844 Score E Sequences producing significant alignments: (Bits) Value seq6169 174 5e-39 seq8151 140 9e-29 seq8225 138 3e-28 seq9034 123 7e-24 seq8226 122 2e-23 seq10131 86.0 2e-12 >seq6169 Length=202695 Score = 174 bits (192), Expect = 5e-39 Identities = 269/379 (71%), Gaps = 5/379 (1%) Strand=Plus/Minus Query 17360 CTTTAGAAATAAACTTCTTTCAGCAGCACGGCGCTTAACTAAACCTTCAAGAACTCGACC 17419 |||| |||||| | | ||| |||||| || || || | |||| | ||| || Sbjct 3268 CTTTTCAAATAATTTACGTTCTTTAGCACGACGGTTCACAAGCCCTTGCATAACCTTGCC 3209 Query 17420 ACCAGCTTTTTTCCA-CGCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTAA 17478 ||| |||| ||||| || | |||||| | ||||| |||| |||||| | ||| | Sbjct 3208 ACCTCCTTTGTTCCATCGATCA-AATTGAGCTGCAGCGCCTTTATAATCTTTAGCATTTA 3150 Query 17479 GAAGTTTGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATA 17538 |||||||| ||||| | |||||| ||||| | |||||||||||| |||| ||||| Sbjct 3149 ACTTTTTGAGTAGTGTTGAGTCTTTAAATGCACCAGTGCCAATGTTGTAAGTCAATGATA 3090 Query 17539 CTAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTTT 17598 | | ||| || || |||||||| | | |||||||||||| || ||||||| || || Sbjct 3089 CCAAAGCATCGAACTGATTTTGGTTTAATGGAACTTTAACCGAAGTATTTACAGCAGATT 3030 Query 17599 CAAACTTAATTAAATCATGTTTGAAGTAGGTTTTTGCTTGTTCAGATGTACATGTATCGC 17658 |||| || ||||||| || | ||||| || |||||||||| || || ||||| | Sbjct 3029 CAAATTTCTTTAAATCTTGAGCCATGTAGGACTTAGCTTGTTCAGCAGTGCAAGTATCAC 2970 Query 17659 CTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCATACGC 17718 ||||||||||| |||||| | | | ||||| || || || ||||| || | Sbjct 2969 CTTTCTTAACTGCGACACCATT--AATTG-CAGTTGTGCCATAACCAATAGTCCAAACAC 2913 Query 17719 CAACACCATCATCATATGC 17737 | |||||||| ||||| || Sbjct 2912 CTACACCATCGTCATACGC 2894 >seq8151 Length=131251 Score = 140 bits (154), Expect = 9e-29 Identities = 248/355 (70%), Gaps = 10/355 (3%) Strand=Plus/Plus Query 17418 CCACCAGCTTTTTTCCACGCTGGGAATTGATCGGCAGCACCTTGATAATC---GCCATTA 17474 ||||| ||||| |||| | |||||||| ||| | |||||||| | | || Sbjct 107232 CCACCTGCTTTGATCCAAACATCAAATTGATCACTGGCAGCGTGATAATCAGAGGCGTTC 107291 Query 17475 TTAAGAAGTTTGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGT 17534 || || ||| | |||||||||||||||||||||||| |||||||| ||| ||| | Sbjct 107292 --AATAATTTTAA-TAAAGTTGAATTTTTAAAAGCACCAATACCAATGTTATAGCTCAAT 107348 Query 17535 GATACTAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACA 17594 || || | || ||||| ||||||||| | | || || || |||| || |||| | Sbjct 107349 GAAACCAACGCATCAAACTGATTTTGATTTAACGGCACATTTACAGCAGCAGTTACTGCT 107408 Query 17595 TTTTCAAACTTAATTAAATCATGTTTGAAGTAGGTTTTTGCTTGTTCAGATGTACATGTA 17654 | ||||| | | |||| || | ||| |||||||||||||| ||||| ||| Sbjct 107409 TGCTCAAAACGTCTAAGGTCATATTGCATATAGTTTTTTGCTTGTTCAATGGTACAAGTA 107468 Query 17655 TCGCCTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCAT 17714 || || | || ||| | | |||| ||||| | ||||| || |||||||| || Sbjct 107469 TCACCATACTGAACAGCTTTTCCATGCGGGTAAATCGTTGTTCCATAACCGATGGTACAC 107528 Query 17715 ACGCCAACACCATCATCATATGCAGTTAA--TCTAGTTCCTTCAAAAGTAGAAAT 17767 || ||||||||||||||||| || |||| |||| ||| |||||| | |||| Sbjct 107529 ACACCAACACCATCATCATAAGC-TTTAAGCTCTA-ATCCCTCAAAACCACAAAT 107581 >seq8225 Length=74308 Score = 138 bits (152), Expect = 3e-28 Identities = 293/431 (68%), Gaps = 10/431 (2%) Strand=Plus/Minus Query 17366 AAATAAACTTC-TTTCAGCAGCACGGCGCTTAACTAAACCTTCAAGAACTCGACCACCAG 17424 |||||| || | ||||||| || || ||||||| || | | || || ||||||| Sbjct 431 AAATAA-CTCCATTTCAGCTTTGCGACGTTTAACTAGTCCAGCCAAGACACGCCCACCAG 373 Query 17425 CTTTTTTCCACGCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTAAGAAGTT 17484 |||| ||||| || |||| | | |||||||||| ||| || ||| || || Sbjct 372 CTTTGTTCCATTTAGGAAATTCAGCTGCAGCACCTTTATAGTCTTTGGCATTTAGCTTTT 313 Query 17485 TGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATACTAGAG 17544 | || | |||||| || ||| | ||| || | ||| || || | ||| ||| || Sbjct 312 TAAGCAGAGTTGATTTGCTAAGATTGCCTTCACCCAAGTTATAAGTGAATGAAGCTAAAG 253 Query 17545 CGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTTTCAAACT 17604 | || ||||| |||||| |||| || ||||| || || ||| | | | |||||||| Sbjct 252 CATCGAATTGGTTTTGATTAAGAGGTACTTTCACCAATCGATTGATAGCGTTTTCAAATA 193 Query 17605 TAATTAAATCATGTTTGAAG-TAGGTTTTTGCTTG---TTCAGATGTACATGTATCGCCT 17660 || ||||||| | |||| || || |||||| |||| || ||| ||||||| Sbjct 192 CAACCAAATCAT-TACGAAGATATTGTTCTGCTTGAGATTCA---GTGCATACATCGCCT 137 Query 17661 TTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCATACGCCA 17720 || ||||| | |||||| ||||| |||| || | || |||||||| || ||| Sbjct 136 TTTTTAACACGTACACCATTCGGGTATTTAATTGTGCCAAATCCAATGGTCCAAACACCA 77 Query 17721 ACACCATCATCATATGCAGTTAATCTAGTTCCTTCAAAAGTAGAAATTAGATTGATGCCA 17780 || ||||| ||||| || |||| | | |||||||| ||||||||||| || Sbjct 76 ACGCCATCGTCATAAGCTTTTAAACGTTTACCTTCAAAGCCTTTGATTAGATTGATTCCT 17 Query 17781 GTGTCACTTGT 17791 | || |||||| Sbjct 16 GAGTTACTTGT 6 >seq9034 Length=15118 Score = 123 bits (136), Expect = 7e-24 Identities = 273/403 (68%), Gaps = 10/403 (2%) Strand=Plus/Plus Query 17361 TTTAGAAATAAACTTC-TTTCAGCAGCACGGCGCTTAACTAAACCTTCAAGAACTCGACC 17419 ||||||||| |||| | ||||||| || || || || | || | | ||| ||||| Sbjct 9891 TTTAGAAAT-AACTCCATTTCAGCTTTGCGACGTTTCACCAGTCCAGCCAAAACACGACC 9949 Query 17420 ACCAGCTTTTTTCCACGCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTAAG 17479 |||||| || |||||| ||| |||| | |||||||||| || || ||| || Sbjct 9950 ACCAGCCTTATTCCACTTTGGAAATTCGGCAGCAGCACCTTTGTAGTCTTTGGCATTGAG 10009 Query 17480 AAGTTTGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATAC 17539 ||| || | |||||| || ||| | ||| ||| | ||||||||| | ||| | Sbjct 10010 CTTTTTAAGCAGAGTTGATTTACTAAGATTGCCTTCGCCCAAGTTGTAGGTAAATGAGGC 10069 Query 17540 TAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTTTC 17599 || ||| || ||||| ||||| | || ||||| || || | ||| | | ||||||| Sbjct 10070 TAAAGCATCGAATTGGTTTTGGTTGAGCGGAACCTTCACCAAGCGATTGATAGCATTTTC 10129 Query 17600 AAACTTAATTAAATCATGTTTGAAG-TAGGTTTTTGCTTG---TTCAGATGTACATGTAT 17655 ||| || || |||| | |||| || || |||||| |||| || ||||||| Sbjct 10130 AAATACAACTAGGTCAT-TACGAAGATATTCTTCTGCTTGAGATTCA---GTGCATGTAT 10185 Query 17656 CGCCTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCATA 17715 | ||||| || || ||| || ||||| | |||| || | || |||||||| | Sbjct 10186 CACCTTTTTTTACACGCACACCGTTAGGGTATTTGATTGTGCCAAATCCAATGGTCCAAA 10245 Query 17716 CGCCAACACCATCATCATATGCAGTTAATCTAGTTCCTTCAAA 17758 ||| |||||||| ||||| || | || | | |||||||| Sbjct 10246 TGCCCACACCATCGTCATAAGCTTTCAAGCGTTTACCTTCAAA 10288 >seq8226 Length=5263 Score = 122 bits (134), Expect = 2e-23 Identities = 296/442 (67%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 17361 TTTAGAAATAAACTTC-TTTCAGCAGCACGGCGCTTAACTAAACCTTCAAGAACTCGACC 17419 |||| |||||| || | ||||||| || || || || | ||| | | || ||||| Sbjct 1565 TTTAAAAATAA-CTCCATTTCAGCTTTGCGACGTTTTACCAGACCAGCCAAGACGCGACC 1507 Query 17420 ACCAGCTTTTTTCCACGCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTAAG 17479 ||||||||| ||||| || |||| | | |||||||||| ||| || ||| || Sbjct 1506 ACCAGCTTTGTTCCATTTAGGAAATTCAGCTGCAGCACCTTTATAGTCTTTGGCATTTAG 1447 Query 17480 AAGTTTGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATAC 17539 ||| || | |||||| || ||| | ||| || | ||| || || | ||| | Sbjct 1446 CTTTTTAAGCAGAGTTGATTTGCTAAGATTGCCTTCACCCAAGTTATAAGTGAATGAAGC 1387 Query 17540 TAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTTTC 17599 || ||| || ||||| |||||| | ||||| ||||| || | ||| | | | ||||| Sbjct 1386 TAAAGCATCGAATTGGTTTTGATTGAGTGGCACTTTCACCAAACGATTGATAGCGTTTTC 1327 Query 17600 AAACTTAATTAAATCATGTTTGAAG-TAGGTTTTTGCTTG---TTCAGATGTACATGTAT 17655 ||| | |||||||| | |||| || || |||||| |||| || ||||||| Sbjct 1326 AAATACTACTAAATCAT-TGCGAAGATATTGTTCTGCTTGAGATTCA---GTGCATGTAT 1271 Query 17656 CGCCTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCATA 17715 | ||||| || || |||||| || || |||| || | || |||||||| | Sbjct 1270 CCCCTTTTTTGACACGCACACCATTCGGATATTTAATTGTGCCAAATCCAATGGTCCAAA 1211 Query 17716 CGCCAACACCATCATCATATGCAGTTAATCTAGTTCCTTCAAAAGTAGAAATTAGATTGA 17775 ||| |||||||| ||||| || | || | | || || ||| |||||||||| Sbjct 1210 TGCCCACACCATCGTCATAGGCTTTCAAGCGTTTACCCTCGAAACCTTTGATTAGATTGA 1151 Query 17776 TGCCAGTGTCACTTGTGGTCAT 17797 | || | || |||||| |||| Sbjct 1150 TTCCTGAGTTACTTGTTTTCAT 1129 >seq10131 Length=28935 Score = 86.0 bits (94), Expect = 2e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 7048 TCAGTTGCTAATCTAACTGTTCCAACCTCACCATCACGCGCTTTAGCCACAATTATTTCG 7107 || ||||||||| | ||||||||| || | ||| |||||| | | ||| ||||| Sbjct 8302 TCGGTTGCTAATTTCACTGTTCCAGTTGACCCGTTACGTGCTTTACCAATAATGATTTCA 8243 Query 7108 GCGATACCCTGATCTTTTGAGTTTTTATCATAATACTCATCACGATATATAAACATGATC 7167 || | || ||||| || | || | ||| ||| ||||| || ||||||||||| Sbjct 8242 GCCGTTCCAGCCTCTTTAGATTCCTTGTTGTAAACCTCGTCACGGTAAATAAACATGATG 8183 Query 7168 ACATCTGCGTCCTCTTCAATAGATCCCGACTCACGAATGTCAGACATTAGAGGTCGTCTA 7227 | |||||||||| || | | || ||||| | |||| ||| ||| ||| || Sbjct 8182 ATGTCTGCGTCCTGCTCTAAATCACCTGACTCTTTTAAATCAGCGTTTACAGGGCGTTTA 8123 Query 7228 TCTTTTCTAGATTCTAAGCTTCGGCTTAATTGCGCTAAACAAAAAACAGGACAATCAAAT 7287 | | ||| ||| | | ||||| | | ||| |||||| ||| || ||||| ||||| Sbjct 8122 TTTGGTCTGTTTTCAAGGTTTCGGTTGAGTTGAGCTAAAGCAAATACTGGACACTCAAAA 8063 Query 7288 TC 7289 || Sbjct 8062 TC 8061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143353560124948