Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_024792.1
Length=160281
Score E
Sequences producing significant alignments: (Bits) Value
seq8849 86.0 6e-12
seq14000 82.4 8e-11
>seq8849
Length=66482
Score = 86.0 bits (94), Expect = 6e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 129930 AGGACTCGAACCTGTAACCTTCGGTTTTGGAGACCGACGCTCTACCAGTTGAGCTAGACC 129989
|||| |||||||| |||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 19432 AGGAATCGAACCTACAACCTTCGGTTTTGGAGACCGACGCTCTGCCAATTGAGCTATACC 19491
Query 129990 CTCACGA 129996
| ||||
Sbjct 19492 CCTACGA 19498
>seq14000
Length=19172
Score = 82.4 bits (90), Expect = 8e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 132307 AGAAGGATTCGAACCTCCGACACAGGGATTTTCAGCCCCCTGCTCTACCAACTGAGCTAC 132366
||| ||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 18594 AGACGGAATCGAACCGCCGACACGGGGATTTTCAATCCCCTGCTCTACCAACTGAGCTAC 18653
Query 132367 CAGTCCAA 132374
| ||||
Sbjct 18654 TCGGCCAA 18661
Score = 82.4 bits (90), Expect = 8e-11
Identities = 54/60 (90%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 132307 AGAAGGATTCGAACCTCCGACACAGGGATTTTCAGCCCCCTGCTCTACCAACTGAGCTAC 132366
||| ||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 18743 AGACGGAATCGAACCGCCGACACGGGGATTTTCAATCCCCTGCTCTACCAACTGAGCTAC 18802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 512674677231240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |