Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_024792.1 Length=160281 Score E Sequences producing significant alignments: (Bits) Value seq8849 86.0 6e-12 seq14000 82.4 8e-11 >seq8849 Length=66482 Score = 86.0 bits (94), Expect = 6e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 129930 AGGACTCGAACCTGTAACCTTCGGTTTTGGAGACCGACGCTCTACCAGTTGAGCTAGACC 129989 |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||| ||| Sbjct 19432 AGGAATCGAACCTACAACCTTCGGTTTTGGAGACCGACGCTCTGCCAATTGAGCTATACC 19491 Query 129990 CTCACGA 129996 | |||| Sbjct 19492 CCTACGA 19498 >seq14000 Length=19172 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 132307 AGAAGGATTCGAACCTCCGACACAGGGATTTTCAGCCCCCTGCTCTACCAACTGAGCTAC 132366 ||| ||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||| Sbjct 18594 AGACGGAATCGAACCGCCGACACGGGGATTTTCAATCCCCTGCTCTACCAACTGAGCTAC 18653 Query 132367 CAGTCCAA 132374 | |||| Sbjct 18654 TCGGCCAA 18661 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 132307 AGAAGGATTCGAACCTCCGACACAGGGATTTTCAGCCCCCTGCTCTACCAACTGAGCTAC 132366 ||| ||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||| Sbjct 18743 AGACGGAATCGAACCGCCGACACGGGGATTTTCAATCCCCTGCTCTACCAACTGAGCTAC 18802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512674677231240