Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq899 122 6e-23
seq9853 89.7 3e-13
seq6889 82.4 5e-11
>seq899
Length=2520420
Score = 122 bits (134), Expect = 6e-23
Identities = 167/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | || | |||| || |||||| |||||| || |||||||| || ||
Sbjct 2265314 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2265373
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| ||||| |||||||| ||||| | ||| || ||| | ||
Sbjct 2265374 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGG 2265433
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| |||||||| || || ||| || | ||| || | |||||| |||| |||||
Sbjct 2265434 ATGCCTTCTTTTTCTTGTATCTTCACCTTGA-CATTCTCGATGGTGTCACTTGGCTCCAC 2265492
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
|| | || || |||||||| || | || ||||||||||||||||| ||
Sbjct 2265493 CTCCAGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATTGT 2265543
Score = 105 bits (116), Expect = 4e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
|||| || ||||| || | ||||| || |||||| |||||| || |||||||| || |
Sbjct 2264400 CACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAG 2264459
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | |
Sbjct 2264460 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGG 2264519
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | || |||||||| || || || | | | || | |||||| || | |||
Sbjct 2264520 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCC 2264578
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | ||||| || || || || || || || || |||||||||||
Sbjct 2264579 ACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | || | |||| || |||||| |||||| || |||||||| || ||
Sbjct 2265086 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2265145
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| | || |||| ||||| |||||||| |||| | |||||| ||| | ||
Sbjct 2265146 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2265205
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || |||||||| || || || | | | || | |||||| || | |||||
Sbjct 2265206 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 2265264
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || || || || || |||||||||||
Sbjct 2265265 CTCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | || | |||| || |||||| |||||| || |||||||| || ||
Sbjct 2264630 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264689
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | ||
Sbjct 2264690 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264749
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || |||||||| || || || | | | || | |||||| || | |||||
Sbjct 2264750 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 2264808
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || || || || || |||||||||||
Sbjct 2264809 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | || | |||| || |||||| |||||| || |||||||| || ||
Sbjct 2264858 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264917
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | ||
Sbjct 2264918 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264977
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || |||||||| || || || | | | || | |||||| || | |||||
Sbjct 2264978 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 2265036
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || || || || || |||||||||||
Sbjct 2265037 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084
>seq9853
Length=4041771
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| |||| || ||| | ||||| || || ||| |||||| || || ||||| || ||
Sbjct 359783 CCGCCTCGCAGACGAAGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGAC 359842
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || | || ||||| |||| || |||| ||||||||| ||| | ||
Sbjct 359843 AGAGTGCGGCCATCCTGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGG 359902
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
| || || | ||| ||||| ||| | || ||| |||||| || | || ||
Sbjct 359903 ATGCCCTCCTCGTCTTGGATTTTGGCTTTGA-CACTTTCAATGGTGTCACTGGGCTCGAC 359961
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || | | ||| || ||||||||||||||
Sbjct 359962 CTCAAGAGTGATGGTCTTGCCCATCAGCGTCTTCACAAAGATCTGCAT 360009
>seq6889
Length=11136585
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| |||| ||| | |||| || || || ||| || || ||||||||||| ||
Sbjct 1034236 ACCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGA 1034295
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| | || |||| || || |||||||| || | | |||||| || | ||
Sbjct 1034296 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGG 1034355
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| || || || || ||| |||| || | |||||| || | ||||
Sbjct 1034356 AATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACATTCTCGATGGTGTCACTGGGCTCCA 1034414
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| || || || || | ||||| || ||||| |||||
Sbjct 1034415 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCAT 1034463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328643672441280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |