Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq504 120 7e-22
seq8560 114 3e-20
seq899 113 1e-19
seq3764 111 4e-19
seq9216 105 2e-17
seq6889 89.7 1e-12
seq11974 87.8 4e-12
>seq504
Length=1076656
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || ||||| || || |||||| | || || || || || ||| |||
Sbjct 268293 AAGACCCTGACAGGGAAGACCATCACTCTTGACGTCGAGCCCTCGGATACAACAGAAAAC 268352
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
||||||| ||||| || || || ||||||||| || ||| |||||||| |||||
Sbjct 268353 GTAAAGCCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 268412
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||||| | |||||| | || |||||| | || || ||||
Sbjct 268413 GCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAAAAGGAGTTC 268472
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
||||||| || || |||||||||||
Sbjct 268473 ACTCTTCGTCTAGTGTTGAGACTTCG 268498
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| || || ||||||| |||| || || | || ||||||| ||||||
Sbjct 268498 CGAAGTCTCAACACTAGACGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 268439
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| |||||||||||| ||||| || || ||||| || | ||| ||
Sbjct 268438 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 268395
>seq8560
Length=3069389
Score = 114 bits (126), Expect = 3e-20
Identities = 143/195 (73%), Gaps = 1/195 (1%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
||||| || || |||||| | | || || ||||| ||| | ||| |||| |
Sbjct 2390100 ACAGGGAAGACCATCACTCTCAAGGTCGAGCCCTCTGATACAATAGAAGATGTAATGGTC 2390159
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || ||||||||| || ||| |||||||| ||||| || ||||||
Sbjct 2390160 AAGATCCAGGATAAGGAAGGAATTCCTCCTGACAG-CAAAGACTGATCTTTGCTGGAAAG 2390218
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| ||||||||||| | |||||| | || |||||| | || || ||||| ||||||||
Sbjct 2390219 CAAGTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCAT 2390278
Query 206374 CTTGTTTTGAGACTT 206388
| || |||||||||
Sbjct 2390279 TTAGTGTTGAGACTT 2390293
Score = 86.0 bits (94), Expect = 1e-11
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813
||||||||| || | |||||||| ||||| || || | || ||||||| |||||| |
Sbjct 2390293 AAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACG 2390234
Query 204814 TCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
||||||||||| |||||||| || ||||| || | ||| ||
Sbjct 2390233 TCCATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG 2390192
>seq899
Length=2520420
Score = 113 bits (124), Expect = 1e-19
Identities = 151/209 (72%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229
||||| ||| || || ||||| || ||||| || ||| |||| ||||| ||||
Sbjct 2265537 CAGATCTTTGTAAAGACCCTCACTGGTAAAACCATTACTCTGGAGGTGGAGCCAAGT--- 2265481
Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289
||||| |||| || ||| ||||| |||||||||||||| || || |||
Sbjct 2265480 GACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCAA 2265421
Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349
|| || | ||||| ||||| || ||| |||||||||| | || || | || ||||||
Sbjct 2265420 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2265361
Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378
||||||||||||| ||||| ||||| ||
Sbjct 2265360 ATCCAGAAAGAGTCCACTCTGCACCTGGT 2265332
Score = 100 bits (110), Expect = 7e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||| ||||| ||||| |||||| |||| || |||
Sbjct 2265288 ACGGGCAAGACCATCACCTTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 2265229
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| ||||| || || || ||| || || || ||||| ||||| ||
Sbjct 2265228 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 2265169
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| ||||||||||| | || || | || |||||| ||||||||||||| ||||| |||
Sbjct 2265168 CAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 2265109
Query 206374 CTTGT 206378
|| ||
Sbjct 2265108 CTGGT 2265104
Score = 91.5 bits (100), Expect = 3e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||| |||| ||||| |||||| |||| || |||
Sbjct 2264832 ACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 2264773
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| ||||| || || || ||| || || || ||||| ||||| ||
Sbjct 2264772 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 2264713
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||||||||| | || || | || |||||| ||||||||||||| ||||| |||
Sbjct 2264712 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 2264653
Query 206374 CTTGT 206378
|| ||
Sbjct 2264652 CTGGT 2264648
Score = 91.5 bits (100), Expect = 3e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||| |||| ||||| |||||| |||| || |||
Sbjct 2265060 ACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 2265001
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| ||||| || || || ||| || || || ||||| ||||| ||
Sbjct 2265000 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 2264941
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||||||||| | || || | || |||||| ||||||||||||| ||||| |||
Sbjct 2264940 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 2264881
Query 206374 CTTGT 206378
|| ||
Sbjct 2264880 CTGGT 2264876
Score = 86.0 bits (94), Expect = 1e-11
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||| |||| ||||| |||||| |||| || |||
Sbjct 2264604 ACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 2264545
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| ||||| || || || ||| || || || ||||| ||||| ||
Sbjct 2264544 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 2264485
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||||||||| | || || | || |||||| ||||||||||||| ||||| |||
Sbjct 2264484 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 2264425
Score = 86.0 bits (94), Expect = 1e-11
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
|| ||||| ||||| ||||||||||||| || ||||||| || || | ||||||||||
Sbjct 2265104 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 2265163
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848
||||| || ||||| ||||| ||||
Sbjct 2265164 AGCTGTTTCCCGGCAAAGATCAGCC 2265188
>seq3764
Length=1885950
Score = 111 bits (122), Expect = 4e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256
|| || || |||||| | || || || || || ||| | | | |||||| |||
Sbjct 1780119 GGGAAGACCATCACTCTTGAGGTCGAGCCCTCGGATACAATAGGAAATGTAAAGGCCAAG 1780178
Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316
|| || || || ||||||||| || ||| |||||||| ||||| | || |||||
Sbjct 1780179 ATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGTTGGCAAGCAA 1780238
Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376
||||||||||| | |||||| | || |||||| | || || ||||| |||||||| ||
Sbjct 1780239 CTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTA 1780298
Query 206377 GTTTTGAGACTTCG 206390
|| |||||||||||
Sbjct 1780299 GTGTTGAGACTTCG 1780312
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| || || |||||||| ||||| || || | || ||||||| ||||||
Sbjct 1780312 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 1780253
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| |||||||||||| ||||| || | ||||| || | ||| ||
Sbjct 1780252 CGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTG 1780209
>seq9216
Length=6899875
Score = 105 bits (116), Expect = 2e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || ||||||||| | || ||| |||||||| |||||
Sbjct 1291398 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGACCACCAAAGACTGATCTTT 1291457
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||||| | |||||| | || |||||| | || || ||| |
Sbjct 1291458 GCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAAAAGGAGCCC 1291517
Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387
||||||| ||||| | ||||||
Sbjct 1291518 ACTCTTCCTCTTGTGTCGAGACT 1291540
>seq6889
Length=11136585
Score = 89.7 bits (98), Expect = 1e-12
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || ||||| |||| || || |||||| ||||
Sbjct 1034220 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCCAGTGACACCATCGAGAAC 1034161
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || ||||| ||| || ||| || || || |||||
Sbjct 1034160 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 1034101
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||||||| | | ||| | | ||||||||| |||||||||||||
Sbjct 1034100 GCCGGCAAGCAGCTGGAAGATTGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 1034041
Query 206365 ACTCTTCACCTTGT 206378
|| || ||||| ||
Sbjct 1034040 ACCCTGCACCTGGT 1034027
Score = 86.0 bits (94), Expect = 1e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || ||||| ||| || ||| || || || ||||| ||||| |||
Sbjct 1033923 AAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAG 1033864
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||||||||| | ||| | | ||||||||| | ||||||||||| || || |||
Sbjct 1033863 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATTCAGAAAGAGTCGACCCTGCAC 1033804
Query 206374 CTTGT 206378
|| ||
Sbjct 1033803 CTGGT 1033799
>seq11974
Length=740964
Score = 87.8 bits (96), Expect = 4e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349
|||||||| ||||| || || ||||| || |||||||| | |||||| | || ||||||
Sbjct 250184 CAAAGACTGATCTTTGCTGGCAAGCAACTGAAAGATGGATGTACTTTGTCTGACTACAAC 250243
Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
| || || ||||| |||||| | ||| | |||||||||||
Sbjct 250244 ATTCAAAAGGAGTCCACTCTTGATCTTTTGTTGAGACTTCG 250284
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| | ||| | |||||| ||||| || || | || ||||||| ||||||
Sbjct 250284 CGAAGTCTCAACAAAAGATCAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 250225
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| |||||||| ||| ||||| || || ||||| || | ||| ||
Sbjct 250224 CATCCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 250181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181592775432339
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |