Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq504 120 7e-22 seq8560 114 3e-20 seq899 113 1e-19 seq3764 111 4e-19 seq9216 105 2e-17 seq6889 89.7 1e-12 seq11974 87.8 4e-12 >seq504 Length=1076656 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || |||||| | || || || || || ||| ||| Sbjct 268293 AAGACCCTGACAGGGAAGACCATCACTCTTGACGTCGAGCCCTCGGATACAACAGAAAAC 268352 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 268353 GTAAAGCCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 268412 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || |||| Sbjct 268413 GCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAAAAGGAGTTC 268472 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| || || ||||||||||| Sbjct 268473 ACTCTTCGTCTAGTGTTGAGACTTCG 268498 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || ||||||| |||| || || | || ||||||| |||||| Sbjct 268498 CGAAGTCTCAACACTAGACGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 268439 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || || ||||| || | ||| || Sbjct 268438 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 268395 >seq8560 Length=3069389 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||| || || |||||| | | || || ||||| ||| | ||| |||| | Sbjct 2390100 ACAGGGAAGACCATCACTCTCAAGGTCGAGCCCTCTGATACAATAGAAGATGTAATGGTC 2390159 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||||||| || ||| |||||||| ||||| || |||||| Sbjct 2390160 AAGATCCAGGATAAGGAAGGAATTCCTCCTGACAG-CAAAGACTGATCTTTGCTGGAAAG 2390218 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | |||||| | || |||||| | || || ||||| |||||||| Sbjct 2390219 CAAGTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCAT 2390278 Query 206374 CTTGTTTTGAGACTT 206388 | || ||||||||| Sbjct 2390279 TTAGTGTTGAGACTT 2390293 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813 ||||||||| || | |||||||| ||||| || || | || ||||||| |||||| | Sbjct 2390293 AAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACG 2390234 Query 204814 TCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| |||||||| || ||||| || | ||| || Sbjct 2390233 TCCATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG 2390192 >seq899 Length=2520420 Score = 113 bits (124), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| || || ||||| || ||||| || ||| |||| ||||| |||| Sbjct 2265537 CAGATCTTTGTAAAGACCCTCACTGGTAAAACCATTACTCTGGAGGTGGAGCCAAGT--- 2265481 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| |||| || ||| ||||| |||||||||||||| || || ||| Sbjct 2265480 GACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCAA 2265421 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || | ||||| ||||| || ||| |||||||||| | || || | || |||||| Sbjct 2265420 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2265361 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||||| ||||| ||||| || Sbjct 2265360 ATCCAGAAAGAGTCCACTCTGCACCTGGT 2265332 Score = 100 bits (110), Expect = 7e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| ||||| ||||| |||||| |||| || ||| Sbjct 2265288 ACGGGCAAGACCATCACCTTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 2265229 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 2265228 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 2265169 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| ||||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 2265168 CAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 2265109 Query 206374 CTTGT 206378 || || Sbjct 2265108 CTGGT 2265104 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 2264832 ACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 2264773 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 2264772 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 2264713 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 2264712 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 2264653 Query 206374 CTTGT 206378 || || Sbjct 2264652 CTGGT 2264648 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 2265060 ACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 2265001 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 2265000 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 2264941 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 2264940 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 2264881 Query 206374 CTTGT 206378 || || Sbjct 2264880 CTGGT 2264876 Score = 86.0 bits (94), Expect = 1e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 2264604 ACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 2264545 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 2264544 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 2264485 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 2264484 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 2264425 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| ||||| ||||||||||||| || ||||||| || || | |||||||||| Sbjct 2265104 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 2265163 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 ||||| || ||||| ||||| |||| Sbjct 2265164 AGCTGTTTCCCGGCAAAGATCAGCC 2265188 >seq3764 Length=1885950 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256 || || || |||||| | || || || || || ||| | | | |||||| ||| Sbjct 1780119 GGGAAGACCATCACTCTTGAGGTCGAGCCCTCGGATACAATAGGAAATGTAAAGGCCAAG 1780178 Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 || || || || ||||||||| || ||| |||||||| ||||| | || ||||| Sbjct 1780179 ATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGTTGGCAAGCAA 1780238 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376 ||||||||||| | |||||| | || |||||| | || || ||||| |||||||| || Sbjct 1780239 CTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTA 1780298 Query 206377 GTTTTGAGACTTCG 206390 || ||||||||||| Sbjct 1780299 GTGTTGAGACTTCG 1780312 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || |||||||| ||||| || || | || ||||||| |||||| Sbjct 1780312 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 1780253 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || | ||||| || | ||| || Sbjct 1780252 CGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTG 1780209 >seq9216 Length=6899875 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| | || ||| |||||||| ||||| Sbjct 1291398 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGACCACCAAAGACTGATCTTT 1291457 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || ||| | Sbjct 1291458 GCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAAAAGGAGCCC 1291517 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 ||||||| ||||| | |||||| Sbjct 1291518 ACTCTTCCTCTTGTGTCGAGACT 1291540 >seq6889 Length=11136585 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| || || |||||| |||| Sbjct 1034220 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCCAGTGACACCATCGAGAAC 1034161 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 1034160 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 1034101 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||| | | ||| | | ||||||||| ||||||||||||| Sbjct 1034100 GCCGGCAAGCAGCTGGAAGATTGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 1034041 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 1034040 ACCCTGCACCTGGT 1034027 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || ||| || || || ||||| ||||| ||| Sbjct 1033923 AAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAG 1033864 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | ||| | | ||||||||| | ||||||||||| || || ||| Sbjct 1033863 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATTCAGAAAGAGTCGACCCTGCAC 1033804 Query 206374 CTTGT 206378 || || Sbjct 1033803 CTGGT 1033799 >seq11974 Length=740964 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 |||||||| ||||| || || ||||| || |||||||| | |||||| | || |||||| Sbjct 250184 CAAAGACTGATCTTTGCTGGCAAGCAACTGAAAGATGGATGTACTTTGTCTGACTACAAC 250243 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | || || ||||| |||||| | ||| | ||||||||||| Sbjct 250244 ATTCAAAAGGAGTCCACTCTTGATCTTTTGTTGAGACTTCG 250284 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| | ||| | |||||| ||||| || || | || ||||||| |||||| Sbjct 250284 CGAAGTCTCAACAAAAGATCAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 250225 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||| ||| ||||| || || ||||| || | ||| || Sbjct 250224 CATCCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 250181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181592775432339