Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_025427.1
Length=54506
Score E
Sequences producing significant alignments: (Bits) Value
seq10909 89.7 2e-13
seq7041 86.0 2e-12
>seq10909
Length=24258
Score = 89.7 bits (98), Expect = 2e-13
Identities = 112/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 12004 TCAGGCTCGGCGACGGAAGATATCGCCAATACGGCGATCAAGGCGTCTTCGGCTCTGAAG 12063
|| ||| ||||| | | ||||||||||| |||||| || ||||| || ||| |||||
Sbjct 16915 TCCGGCGCGGCGGGGAACGATATCGCCAACACGGCGCAGAAAGCGTCGTCTGCTTTGAAG 16974
Query 12064 ATTCAGGCGAGCGAAATGCAACGCGCCTTCGACATCATGGTCGCCGGCGGCAAGGCTGGC 12123
|| | || ||| |||| || || || |||||||| | |||||||| || |||
Sbjct 16975 ATCGAAGCAGACGATTTGCAGAAGGCTTTTGATATCATGGTGACTGGCGGCAAAGCAGGC 17034
Query 12124 CAGTTCGAGTTGAAGGACATGGCCTCCTATATCC 12157
||||| || ||||| || ||||| | | |||||
Sbjct 17035 CAGTTTGAATTGAAAGATATGGCGGCGTCTATCC 17068
>seq7041
Length=191181
Score = 86.0 bits (94), Expect = 2e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 37840 GGCTCGCCGGTTTCCAGGTCGACGACTGGTGAGCCTTCCAGGCAGGCGGCGTGGCAGGTG 37899
||||| || || || || |||||||| || || || ||||||| |||||||||||||
Sbjct 27790 GGCTCACCCGTATCGAGATCGACGACAGGCGATCCCGCCAGGCACTCGGCGTGGCAGGTT 27849
Query 37900 CCCATCTCGATATCGGCGGCGCAGAGATCGTCGTCGTTGATGGCGACGCCGCAGATCGGG 37959
||| ||||||||| | |||||| | ||| || |||| | ||| ||||||| |||
Sbjct 27850 CCCTCCTCGATATCTGTGGCGCAAACATCTTCCGGCTTGAAAGGAACGTCGCAGATTGGG 27909
Query 37960 CA 37961
||
Sbjct 27910 CA 27911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 174266431122744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |