Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_025427.1 Length=54506 Score E Sequences producing significant alignments: (Bits) Value seq10909 89.7 2e-13 seq7041 86.0 2e-12 >seq10909 Length=24258 Score = 89.7 bits (98), Expect = 2e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 12004 TCAGGCTCGGCGACGGAAGATATCGCCAATACGGCGATCAAGGCGTCTTCGGCTCTGAAG 12063 || ||| ||||| | | ||||||||||| |||||| || ||||| || ||| ||||| Sbjct 16915 TCCGGCGCGGCGGGGAACGATATCGCCAACACGGCGCAGAAAGCGTCGTCTGCTTTGAAG 16974 Query 12064 ATTCAGGCGAGCGAAATGCAACGCGCCTTCGACATCATGGTCGCCGGCGGCAAGGCTGGC 12123 || | || ||| |||| || || || |||||||| | |||||||| || ||| Sbjct 16975 ATCGAAGCAGACGATTTGCAGAAGGCTTTTGATATCATGGTGACTGGCGGCAAAGCAGGC 17034 Query 12124 CAGTTCGAGTTGAAGGACATGGCCTCCTATATCC 12157 ||||| || ||||| || ||||| | | ||||| Sbjct 17035 CAGTTTGAATTGAAAGATATGGCGGCGTCTATCC 17068 >seq7041 Length=191181 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 37840 GGCTCGCCGGTTTCCAGGTCGACGACTGGTGAGCCTTCCAGGCAGGCGGCGTGGCAGGTG 37899 ||||| || || || || |||||||| || || || ||||||| ||||||||||||| Sbjct 27790 GGCTCACCCGTATCGAGATCGACGACAGGCGATCCCGCCAGGCACTCGGCGTGGCAGGTT 27849 Query 37900 CCCATCTCGATATCGGCGGCGCAGAGATCGTCGTCGTTGATGGCGACGCCGCAGATCGGG 37959 ||| ||||||||| | |||||| | ||| || |||| | ||| ||||||| ||| Sbjct 27850 CCCTCCTCGATATCTGTGGCGCAAACATCTTCCGGCTTGAAAGGAACGTCGCAGATTGGG 27909 Query 37960 CA 37961 || Sbjct 27910 CA 27911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174266431122744