Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_025428.1 Length=59601 Score E Sequences producing significant alignments: (Bits) Value seq10097 100 1e-16 seq10910 93.3 2e-14 seq8453 87.8 7e-13 >seq10097 Length=214583 Score = 100 bits (110), Expect = 1e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 10739 CCGCCTCCGAACTGCGCCAGTTCATCGAGCGCGTCGAGCGCCTGGAGGTCGAGAAGAAGG 10798 ||||| |||||||||| ||||||||||||||||||||||| || |||| || ||| | Sbjct 96038 CCGCCGCCGAACTGCGTCAGTTCATCGAGCGCGTCGAGCGTCTCGAGGAAGAAAAGGCCG 95979 Query 10799 ACATCGCGGACCAGGTGAAGGAGGTCCTGGCCGAGGCCAAGGCGCGGGGCTACGACACCA 10858 ||| || | | | ||||| ||| ||| ||||| |||| || || ||||| |||| Sbjct 95978 CCATTCAGGGCGATATCAAGGATGTCATGGGTGAGGCGAAGGGCCGTGGTTACGATACCA 95919 Query 10859 AGGTCATGCGCAAGATCATC 10878 ||| || |||| |||||| Sbjct 95918 AGGCGATCCGCACCATCATC 95899 >seq10910 Length=200385 Score = 93.3 bits (102), Expect = 2e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 10760 TCATCGAGCGCGTCGAGCGCCTGGAGGTCGAGAAGAAGGACATCGCGGACCAGGTGAAGG 10819 |||||||||||||||||||||| |||||||||||| || ||| ||| ||| | |||| Sbjct 191742 TCATCGAGCGCGTCGAGCGCCTCGAGGTCGAGAAGGCCGAGATCATGGAGCAGATCAAGG 191801 Query 10820 AGGTCCTGGCCGAGGCCAAGGCGCGGGGCTACGACACCAAGGTCATGCGCAAGATCAT-C 10878 | ||| ||||||||||| |||| |||| |||||| || ||| || | | Sbjct 191802 AAGTCTATAACGAGGCCAAGGGCAACGGCTTCGACGTCAAGGTGCTGAAGAAGGTCGTGC 191861 Query 10879 GCAGAGCGCAAGCGCAGCCGCGACGACATCAACGAGGAGGAAGCCGTCCTCGAACTGTAC 10938 || |||||||| ||||| | | | | || ||||| || ||||||| || ||| Sbjct 191862 GC-CTGCGCAAGCAGGACCGCGCCAAGCGCCAGGAAGAGGACGCGATCCTCGACCTCTAC 191920 Query 10939 CGCTCGGC 10946 | |||||| Sbjct 191921 CTCTCGGC 191928 >seq8453 Length=106269 Score = 87.8 bits (96), Expect = 7e-13 Identities = 103/134 (77%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 10760 TCATCGAGCGCGTCGAGCGCCTGGAGGTCGAGAAGAAGGACATCGCGGACCAGGTGAAGG 10819 |||||||||||||||||||||| || | |||||| || || || ||| | |||| Sbjct 48697 TCATCGAGCGCGTCGAGCGCCTCGAAGAGGAGAAGGCCGAGGTCATGGCCCACATCAAGG 48638 Query 10820 AGGTCCTGGCCGAGGCCAAGGCGCG-GGGCTACGACACCAAGGTCATGCGCAAGATCAT- 10877 | || | ||||||||||||| ||| |||| |||| |||||| |||||||| |||| Sbjct 48637 ACGTGTTCGCCGAGGCCAAGG-GCGAAGGCTTCGACGTCAAGGTGCTGCGCAAGGTCATC 48579 Query 10878 CGCAGAGCGCAAGC 10891 |||| |||||||| Sbjct 48578 CGCA-TGCGCAAGC 48566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190567515549754