Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_025428.1
Length=59601
Score E
Sequences producing significant alignments: (Bits) Value
seq10097 100 1e-16
seq10910 93.3 2e-14
seq8453 87.8 7e-13
>seq10097
Length=214583
Score = 100 bits (110), Expect = 1e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 10739 CCGCCTCCGAACTGCGCCAGTTCATCGAGCGCGTCGAGCGCCTGGAGGTCGAGAAGAAGG 10798
||||| |||||||||| ||||||||||||||||||||||| || |||| || ||| |
Sbjct 96038 CCGCCGCCGAACTGCGTCAGTTCATCGAGCGCGTCGAGCGTCTCGAGGAAGAAAAGGCCG 95979
Query 10799 ACATCGCGGACCAGGTGAAGGAGGTCCTGGCCGAGGCCAAGGCGCGGGGCTACGACACCA 10858
||| || | | | ||||| ||| ||| ||||| |||| || || ||||| ||||
Sbjct 95978 CCATTCAGGGCGATATCAAGGATGTCATGGGTGAGGCGAAGGGCCGTGGTTACGATACCA 95919
Query 10859 AGGTCATGCGCAAGATCATC 10878
||| || |||| ||||||
Sbjct 95918 AGGCGATCCGCACCATCATC 95899
>seq10910
Length=200385
Score = 93.3 bits (102), Expect = 2e-14
Identities = 135/188 (72%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 10760 TCATCGAGCGCGTCGAGCGCCTGGAGGTCGAGAAGAAGGACATCGCGGACCAGGTGAAGG 10819
|||||||||||||||||||||| |||||||||||| || ||| ||| ||| | ||||
Sbjct 191742 TCATCGAGCGCGTCGAGCGCCTCGAGGTCGAGAAGGCCGAGATCATGGAGCAGATCAAGG 191801
Query 10820 AGGTCCTGGCCGAGGCCAAGGCGCGGGGCTACGACACCAAGGTCATGCGCAAGATCAT-C 10878
| ||| ||||||||||| |||| |||| |||||| || ||| || | |
Sbjct 191802 AAGTCTATAACGAGGCCAAGGGCAACGGCTTCGACGTCAAGGTGCTGAAGAAGGTCGTGC 191861
Query 10879 GCAGAGCGCAAGCGCAGCCGCGACGACATCAACGAGGAGGAAGCCGTCCTCGAACTGTAC 10938
|| |||||||| ||||| | | | | || ||||| || ||||||| || |||
Sbjct 191862 GC-CTGCGCAAGCAGGACCGCGCCAAGCGCCAGGAAGAGGACGCGATCCTCGACCTCTAC 191920
Query 10939 CGCTCGGC 10946
| ||||||
Sbjct 191921 CTCTCGGC 191928
>seq8453
Length=106269
Score = 87.8 bits (96), Expect = 7e-13
Identities = 103/134 (77%), Gaps = 4/134 (3%)
Strand=Plus/Minus
Query 10760 TCATCGAGCGCGTCGAGCGCCTGGAGGTCGAGAAGAAGGACATCGCGGACCAGGTGAAGG 10819
|||||||||||||||||||||| || | |||||| || || || ||| | ||||
Sbjct 48697 TCATCGAGCGCGTCGAGCGCCTCGAAGAGGAGAAGGCCGAGGTCATGGCCCACATCAAGG 48638
Query 10820 AGGTCCTGGCCGAGGCCAAGGCGCG-GGGCTACGACACCAAGGTCATGCGCAAGATCAT- 10877
| || | ||||||||||||| ||| |||| |||| |||||| |||||||| ||||
Sbjct 48637 ACGTGTTCGCCGAGGCCAAGG-GCGAAGGCTTCGACGTCAAGGTGCTGCGCAAGGTCATC 48579
Query 10878 CGCAGAGCGCAAGC 10891
|||| ||||||||
Sbjct 48578 CGCA-TGCGCAAGC 48566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190567515549754
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |