Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_025429.1
Length=156446
Score E
Sequences producing significant alignments: (Bits) Value
seq9538 260 1e-64
seq9470 196 5e-45
seq7053 188 7e-43
seq6415 174 2e-38
seq10734 163 3e-35
seq646 114 1e-20
seq9425 96.9 3e-15
seq9639 95.1 1e-14
>seq9538
Length=646221
Score = 260 bits (288), Expect = 1e-64
Identities = 403/570 (71%), Gaps = 38/570 (7%)
Strand=Plus/Plus
Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302
||||| |||||||||||||| ||||||| | ||||| || | || |||| |||||
Sbjct 486531 TTCGGCTATCAGATGCGTTTCGATCTGGCCGACGGCTTCCCGGTGCTTACCACCAAGAAA 486590
Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362
||||| ||||||||||||||| |||||| |||||||| || |||||||| ||||||
Sbjct 486591 CTGCACCTGAAGTCGATCATCCACGAACTTCTGTGGTTTCTGGCCGGCGATACCAACATC 486650
Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422
|| ||||| |||| ||| ||||| |||||||| || ||||| |||||||| ||| |
Sbjct 486651 AAATATCTGAACGACCACGGCGTCACCATCTGGGACGAGTGGGCGGATGCCAAGGGCGAT 486710
Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482
||||| || ||||| |||||||||||| |||||| || | || ||| ||
Sbjct 486711 CTCGGCCCGGTCTATGGCAAGCAGTGGCGCTCCTGGCCG------GATG-CGC-----AT 486758
Query 142483 GACGTCACAGACGAACCGATCG---ATCAGATCCGCCGGATCATTACTGACTTGAAGAAG 142539
| || ||| ||| | ||||| ||| | ||||| ||| || ||
Sbjct 486759 GGCGGCACCATCGACCAGATCGAAAATCTGCTCCGCGAAATC------CGCTGCAA---- 486808
Query 142540 TCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATG 142599
|||| |||| || || | |||||| | || ||||| || || || || || | |||
Sbjct 486809 --TCCTTATTCACGCCGGCTGATCGTCTCGGCATGGAATCCGGCCGAGGTGGAGGCAATG 486866
Query 142600 GCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCA 142659
|| || || || || ||| ||||||| ||| |||| ||| | || ||||||
Sbjct 486867 GCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGT---TTCGGACGGACGGCTGTCA 486923
Query 142660 TGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCG 142719
|||||||| || |||||||| || ||| || |||||||| ||||||||||| |||||
Sbjct 486924 TGCCAGCTCTACCAGCGTTCCGCGGACATCTTTCTCGGCGTGCCGTTCAACATCGCTTCC 486983
Query 142720 TACGCGCTTCTCACACAGCTCATTGCTCGCGAATG----CGGTCTGGAACTCGGAGACTT 142775
|| ||||| ||||| || | | || | ||| | | || ||| ||| ||| || ||
Sbjct 486984 TATGCGCTGCTCAC-CA--TGA-TGGTGGCGCAGGTGACGGGGCTGAAACCCGGCGATTT 487039
Query 142776 CGTCCACACCTTCGGCAATTCGCACATCTA 142805
||| ||||| | || | ||||||||||
Sbjct 487040 CGTGCACACGCTGGGTGACGCGCACATCTA 487069
>seq9470
Length=127963
Score = 196 bits (216), Expect = 5e-45
Identities = 385/567 (68%), Gaps = 28/567 (5%)
Strand=Plus/Minus
Query 142241 TCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGA 142300
||||||| | |||||||| ||| | ||||| | |||||||| || || |||| ||||
Sbjct 53176 TCTTCGGCCGCCAGATGCGCTTCGACCTGGCGCGGGGCTTTCCGCTGCTGACCACCAAGA 53117
Query 142301 AGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACA 142360
||||||| ||| |||||||||||||| || ||||||||||| ||||| || ||||
Sbjct 53116 AGCTGCACCTGCGCTCGATCATCGTCGAGCTTCTGTGGTTCCTGCGCGGCGAGACCAACA 53057
Query 142361 TCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCA 142420
|| | || | || || |||| |||||||| |||||||| || ||| | |||
Sbjct 53056 TCGCCTGGCTGAAGGACAACGGGGTCAGCATCTGGGACGAATGGGCCGACGCCGAGGGCG 52997
Query 142421 ACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAG 142480
| ||||| || |||||||||||||||||| || ||| || | || | | | | |
Sbjct 52996 AGCTCGGTCCGGTCTACGGCAAGCAGTGGCGCTCGTGGGCGGCGCCCGACGGC-CGCGTG 52938
Query 142481 AT-GACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTTGAAGAAG 142539
|| ||| | | | | | |||| ||||||| | | ||
Sbjct 52937 ATCGACCAGATCGCCAATGTGGTCGAGGCGATCCGC------------GCC---AA---- 52897
Query 142540 TCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATG 142599
|| | || || ||||||||| | || |||||||| || || ||||||||||||
Sbjct 52896 --CCCCAACAGCCGCCGCCACATCGTCTCGGCCTGGAACCCGGCCGACGTCGACGACATG 52839
Query 142600 GCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCG-ACTCGAAGAAGCGTCTGTC 142658
|| || || ||||| ||| ||||||| ||| ||| | || | || |||||
Sbjct 52838 GCCCTGCCGCCGTGCCACTGCCTGTTCCAGTTCTTCGTGGCGGACGGAAAA----CTGTC 52783
Query 142659 ATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTC 142718
|||| ||| || ||||| ||||| ||| |||||||||||| ||||||||||| || ||
Sbjct 52782 CTGCCTGCTTTACCAGCGCTCGGCCGACCTGTTCCTCGGCGTGCCGTTCAACATCGCCTC 52723
Query 142719 GTACGCGCTTCTCACACAGCTCATTGCTCGCGAATGCGGTCTGGAACTCGGAGACTTCGT 142778
||||| || || || | | | | || | | ||| ||| | | ||| || |||||
Sbjct 52722 CTACGCCCTGCTGACCCTGATGACGGCCCAGGCCACCGGCCTGCAGCCCGGCGAGTTCGT 52663
Query 142779 CCACACCTTCGGCAATTCGCACATCTA 142805
|||||| | ||| | | ||| ||||
Sbjct 52662 GCACACCCTGGGCGACGCCCACCTCTA 52636
>seq7053
Length=464797
Score = 188 bits (208), Expect = 7e-43
Identities = 346/501 (69%), Gaps = 36/501 (7%)
Strand=Plus/Minus
Query 142241 TCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGA 142300
|||||||| | |||||||| ||| | || | |||| ||||| ||||| |||| ||||
Sbjct 70812 TCTTCGGTTACCAGATGCGCTTCGACCTTTCCGAAGGTTTTCCGGTTCTCACCACCAAGA 70753
Query 142301 AGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACA 142360
||||||||||| || |||||| ||| | ||||||||||| || |||||||| || |
Sbjct 70752 AGCTGCATCTGCGCTCCATCATCCATGAATTGCTGTGGTTCCTGAAGGGCGATACCAATA 70693
Query 142361 TCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCA 142420
|| ||||| | || || ||| |||||||| |||||||| || | || |||
Sbjct 70692 TCGCCTATCTCAAGGAAAACGGCGTTTCCATCTGGGACGAATGGGCCGACGAGAACGGCG 70633
Query 142421 ACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAG 142480
| ||||| || ||||| || ||||||| |||||| | | ||| ||
Sbjct 70632 ATCTCGGCCCGGTCTATGGTGCGCAGTGGCGTTCCTGGCC----------GGCGCCGG-- 70585
Query 142481 ATGACGTCACAGACGAACCGATCGATCAGATC-CGC--CGGATCATTACTGACTTGAAGA 142537
|| | || | ||||| |||||| ||| | |||| | | | ||||||
Sbjct 70584 --------ACGGCCG-CCATATCGACCAGATCGCGCTTCTGATC--GAGGGTC-TGAAGA 70537
Query 142538 AGTCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACA 142597
|| |||| |||||||||||||| | ||||||||||| || || ||||| |
Sbjct 70536 CCAACCCGAATTCCCGTCGTCACATCGTTTCGGCGTGGAACCCGGCGCTGGTGGACGAAA 70477
Query 142598 TGGCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGT---CGACTCGAAGAAGCGTC 142654
|||| | || || |||||| ||||||| ||| | || ||| | || ||| |
Sbjct 70476 TGGCGTTGCCGCCCTGTCACTGCCTGTTCCAGTTCTATGTTTCCGA-TGGA--AAG---C 70423
Query 142655 TGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTG 142714
|||| |||||||| |||||||| || || || ||||||||||| ||||||||||| |
Sbjct 70422 TGTCCTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTCAACATCG 70363
Query 142715 CTTCGTACGCGCTTCTCACAC 142735
| || || ||||| || ||||
Sbjct 70362 CCTCCTATGCGCTGCTGACAC 70342
>seq6415
Length=247467
Score = 174 bits (192), Expect = 2e-38
Identities = 382/570 (67%), Gaps = 38/570 (7%)
Strand=Plus/Plus
Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302
||||| | ||||| || ||| ||||||| | ||||| || |||| || | ||||||
Sbjct 52999 TTCGGCCGGCAGATCCGCTTCGATCTGGCCAAGGGCTTCCCGGTTCTGACCTCCAAGAAG 53058
Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362
||||| ||| ||||||||| |||| || ||||||||||| || ||||| || ||||||
Sbjct 53059 CTGCACCTGCGCTCGATCATCATCGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATC 53118
Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422
|| || | || || ||| |||||||| || ||||| || | || ||| |
Sbjct 53119 GCCTACCTCAAGGACAACGGCGTGCGCATCTGGGACGAGTGGGCCGACGAAAACGGCGAT 53178
Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482
|| || || |||||||||||||||||| || ||| ||| ||| ||
Sbjct 53179 CTTGGCCCGGTCTACGGCAAGCAGTGGCGCTCGTGGGCGA----------CGCCGG---- 53224
Query 142483 GACGTCACAGACGAACCGATCGATCAGAT---CCGCCGGATCATTACTGACTTGAAGAAG 142539
|| | || |||||| ||||| | || | || | || | ||||
Sbjct 53225 ------ACGGGCG-CGTGATCGACCAGATCGCCAACCTGGTCGAAA---ACCTAAAGACC 53274
Query 142540 TCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATG 142599
||| || || ||||||||||| || |||||||| || || ||||||||||||
Sbjct 53275 AATCCAAGCAGCCGCCGCCACATCGTCACGGCCTGGAACCCCGCCGATGTCGACGACATG 53334
Query 142600 GCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCA 142659
|| || || || || ||| ||||||| ||| ||||| || | | | |||
Sbjct 53335 GCCCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTTCGTCG--CGGACGGAAAG-CTGAGC 53391
Query 142660 TGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCG 142719
|||||||| ||||| || || ||| |||| | || || ||||||||||| || ||
Sbjct 53392 TGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATCGCCTCC 53451
Query 142720 TACGCGCTTCTCACACAGCTCATTGCTCGCGAATG----CGGTCTGGAACTCGGAGACTT 142775
||||| || || || | | || |||| || | ||| ||||| | || || ||
Sbjct 53452 TACGCCCTGCTGACCCTG----ATGGTCGCCAAGGTCGTCGGCCTGGAGCCGGGCGAGTT 53507
Query 142776 CGTCCACACCTTCGGCAATTCGCACATCTA 142805
|||||||||||||||| | | ||| ||||
Sbjct 53508 CGTCCACACCTTCGGCGACGCCCACCTCTA 53537
>seq10734
Length=9239
Score = 163 bits (180), Expect = 3e-35
Identities = 155/198 (78%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 142252 CAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAGCTGCATCTG 142311
|||||||||||||| ||||| ||||||| || || || |||| ||||||||||| |||
Sbjct 1315 CAGATGCGTTTCAACCTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTG 1374
Query 142312 AAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATCAAGTATCTT 142371
||||||||| ||| || ||||||||||| || ||||| || |||||| || ||
Sbjct 1375 CGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTG 1434
Query 142372 CACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAACCTCGGACCT 142431
| || || | || ||||||||| || ||||| || | ||||||| ||||||| ||
Sbjct 1435 AAGGACAACCAGGTACGGATCTGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCCG 1494
Query 142432 GTCTACGGCAAGCAGTGG 142449
||||||||||||||||||
Sbjct 1495 GTCTACGGCAAGCAGTGG 1512
>seq646
Length=687
Score = 114 bits (126), Expect = 1e-20
Identities = 175/245 (71%), Gaps = 11/245 (4%)
Strand=Plus/Minus
Query 142565 TCACCGCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTCCGTGTCACATGATGT 142624
||||||| ||||| || || || |||||| | ||||| || || || |||||| |||
Sbjct 440 TCACCGCCTGGAATCCGGCCGATGTCGACAAGATGGCGCTGCCGCCCTGTCACTGCCTGT 381
Query 142625 TCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCATGCCAGCTGTATCAGCGTTCGGCAG 142684
| || ||| |||||| | ||| || ||||| |||||||| || ||||| ||||| |
Sbjct 380 TTCAGTTCTACGTCGCC---AAGGGCCGGCTGTCCTGCCAGCTCTACCAGCGCTCGGCGG 324
Query 142685 ACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTCTCACACAGCTCATTG 142744
| |||||||||||| || |||||||| || || || || || || || || | | ||
Sbjct 323 ATGTGTTCCTCGGCGTGCCCTTCAACATCGCGTCCTATGCCCTGCTGAC-CA--TGA-TG 268
Query 142745 CTCGCGAATG----CGGTCTGGAACTCGGAGACTTCGTCCACACCTTCGGCAATTCGCAC 142800
||||| | | || ||| | | ||| || ||||| || ||| |||| | |||||
Sbjct 267 GTCGCGCAGGTCACTGGCCTGAAGCCCGGCGAGTTCGTGCATACCCTCGGTGACGCGCAC 208
Query 142801 ATCTA 142805
||||
Sbjct 207 CTCTA 203
>seq9425
Length=520298
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/213 (69%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 148825 CAGCTGCGCGGTTTCATCGAGCGTATNNNNNNNNNNGAAGAAGAGAAGAAGACGATCGGC 148884
||| |||| | |||||||||| || || ||||||||||||||||||| |
Sbjct 45884 CAGTTGCGGGCACTCATCGAGCGCATCGAGCGGCTCGAGGAAGAGAAGAAGACGATCGCC 45825
Query 148885 GATGACATCAAGGACGTCTACGGCGATGCCAAAGGAAATGGCTTCGACACCAA---GATC 148941
|| ||||||||||||||||| | || ||||| || | |||||||||||||| ||||
Sbjct 45824 GACGACATCAAGGACGTCTATGCGGAAGCCAAGGGTACGGGCTTCGACACCAAGGCGATC 45765
Query 148942 TTGAAGAAGGTCATCAACATCCGCAAGAAGGATGAGCAGGAGCGCATGGAAGAGGAAGCA 149001
| || | | | |||||| |||| || |||||| |||||| ||| |
Sbjct 45764 CGCGCGCTGG---TGCGCCTGCGCAAGCAGGACCAGGCGGAGCGGCAGGAAGAAGAAACG 45708
Query 149002 ATCCTCGATACGTATCTCGCTGCTCTCGGCATG 149034
||||||||| || || || |||||||||
Sbjct 45707 ATCCTCGATCTCTACAAAGCCGCGCTCGGCATG 45675
>seq9639
Length=103419
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302
||||| || |||||||| ||| | ||| | |||||||||| || || |||| ||||||
Sbjct 4264 TTCGGCCACCAGATGCGCTTCGACCTGTCCGAAGGCTTTCCGCTGGTCACCACCAAGAAG 4205
Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362
|||| || ||||| |||||| | ||||| ||||||||||| ||||| | || |
Sbjct 4204 GTGCACCTCAAGTCCATCATCCTGGAACTGCTGTGGTTCCTGCGCGGCGACAGCAATGTG 4145
Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422
| || || || | | | || |||||||| |||||||| | | ||| ||
Sbjct 4144 CGCTGGCTGCAGGAGCGCGGCTGCACCATCTGGGACGAATGGGCCCGCGAGGACGGCGAC 4085
Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGG 142449
|| || || ||||| ||| ||| |||
Sbjct 4084 CTGGGCCCGGTCTATGGCGTGCAATGG 4058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500404987281840
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