Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq9538 260 1e-64 seq9470 196 5e-45 seq7053 188 7e-43 seq6415 174 2e-38 seq10734 163 3e-35 seq646 114 1e-20 seq9425 96.9 3e-15 seq9639 95.1 1e-14 >seq9538 Length=646221 Score = 260 bits (288), Expect = 1e-64 Identities = 403/570 (71%), Gaps = 38/570 (7%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| |||||||||||||| ||||||| | ||||| || | || |||| ||||| Sbjct 486531 TTCGGCTATCAGATGCGTTTCGATCTGGCCGACGGCTTCCCGGTGCTTACCACCAAGAAA 486590 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 ||||| ||||||||||||||| |||||| |||||||| || |||||||| |||||| Sbjct 486591 CTGCACCTGAAGTCGATCATCCACGAACTTCTGTGGTTTCTGGCCGGCGATACCAACATC 486650 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 || ||||| |||| ||| ||||| |||||||| || ||||| |||||||| ||| | Sbjct 486651 AAATATCTGAACGACCACGGCGTCACCATCTGGGACGAGTGGGCGGATGCCAAGGGCGAT 486710 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 ||||| || ||||| |||||||||||| |||||| || | || ||| || Sbjct 486711 CTCGGCCCGGTCTATGGCAAGCAGTGGCGCTCCTGGCCG------GATG-CGC-----AT 486758 Query 142483 GACGTCACAGACGAACCGATCG---ATCAGATCCGCCGGATCATTACTGACTTGAAGAAG 142539 | || ||| ||| | ||||| ||| | ||||| ||| || || Sbjct 486759 GGCGGCACCATCGACCAGATCGAAAATCTGCTCCGCGAAATC------CGCTGCAA---- 486808 Query 142540 TCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATG 142599 |||| |||| || || | |||||| | || ||||| || || || || || | ||| Sbjct 486809 --TCCTTATTCACGCCGGCTGATCGTCTCGGCATGGAATCCGGCCGAGGTGGAGGCAATG 486866 Query 142600 GCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCA 142659 || || || || || ||| ||||||| ||| |||| ||| | || |||||| Sbjct 486867 GCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGT---TTCGGACGGACGGCTGTCA 486923 Query 142660 TGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCG 142719 |||||||| || |||||||| || ||| || |||||||| ||||||||||| ||||| Sbjct 486924 TGCCAGCTCTACCAGCGTTCCGCGGACATCTTTCTCGGCGTGCCGTTCAACATCGCTTCC 486983 Query 142720 TACGCGCTTCTCACACAGCTCATTGCTCGCGAATG----CGGTCTGGAACTCGGAGACTT 142775 || ||||| ||||| || | | || | ||| | | || ||| ||| ||| || || Sbjct 486984 TATGCGCTGCTCAC-CA--TGA-TGGTGGCGCAGGTGACGGGGCTGAAACCCGGCGATTT 487039 Query 142776 CGTCCACACCTTCGGCAATTCGCACATCTA 142805 ||| ||||| | || | |||||||||| Sbjct 487040 CGTGCACACGCTGGGTGACGCGCACATCTA 487069 >seq9470 Length=127963 Score = 196 bits (216), Expect = 5e-45 Identities = 385/567 (68%), Gaps = 28/567 (5%) Strand=Plus/Minus Query 142241 TCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGA 142300 ||||||| | |||||||| ||| | ||||| | |||||||| || || |||| |||| Sbjct 53176 TCTTCGGCCGCCAGATGCGCTTCGACCTGGCGCGGGGCTTTCCGCTGCTGACCACCAAGA 53117 Query 142301 AGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACA 142360 ||||||| ||| |||||||||||||| || ||||||||||| ||||| || |||| Sbjct 53116 AGCTGCACCTGCGCTCGATCATCGTCGAGCTTCTGTGGTTCCTGCGCGGCGAGACCAACA 53057 Query 142361 TCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCA 142420 || | || | || || |||| |||||||| |||||||| || ||| | ||| Sbjct 53056 TCGCCTGGCTGAAGGACAACGGGGTCAGCATCTGGGACGAATGGGCCGACGCCGAGGGCG 52997 Query 142421 ACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAG 142480 | ||||| || |||||||||||||||||| || ||| || | || | | | | | Sbjct 52996 AGCTCGGTCCGGTCTACGGCAAGCAGTGGCGCTCGTGGGCGGCGCCCGACGGC-CGCGTG 52938 Query 142481 AT-GACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTTGAAGAAG 142539 || ||| | | | | | |||| ||||||| | | || Sbjct 52937 ATCGACCAGATCGCCAATGTGGTCGAGGCGATCCGC------------GCC---AA---- 52897 Query 142540 TCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATG 142599 || | || || ||||||||| | || |||||||| || || |||||||||||| Sbjct 52896 --CCCCAACAGCCGCCGCCACATCGTCTCGGCCTGGAACCCGGCCGACGTCGACGACATG 52839 Query 142600 GCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCG-ACTCGAAGAAGCGTCTGTC 142658 || || || ||||| ||| ||||||| ||| ||| | || | || ||||| Sbjct 52838 GCCCTGCCGCCGTGCCACTGCCTGTTCCAGTTCTTCGTGGCGGACGGAAAA----CTGTC 52783 Query 142659 ATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTC 142718 |||| ||| || ||||| ||||| ||| |||||||||||| ||||||||||| || || Sbjct 52782 CTGCCTGCTTTACCAGCGCTCGGCCGACCTGTTCCTCGGCGTGCCGTTCAACATCGCCTC 52723 Query 142719 GTACGCGCTTCTCACACAGCTCATTGCTCGCGAATGCGGTCTGGAACTCGGAGACTTCGT 142778 ||||| || || || | | | | || | | ||| ||| | | ||| || ||||| Sbjct 52722 CTACGCCCTGCTGACCCTGATGACGGCCCAGGCCACCGGCCTGCAGCCCGGCGAGTTCGT 52663 Query 142779 CCACACCTTCGGCAATTCGCACATCTA 142805 |||||| | ||| | | ||| |||| Sbjct 52662 GCACACCCTGGGCGACGCCCACCTCTA 52636 >seq7053 Length=464797 Score = 188 bits (208), Expect = 7e-43 Identities = 346/501 (69%), Gaps = 36/501 (7%) Strand=Plus/Minus Query 142241 TCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGA 142300 |||||||| | |||||||| ||| | || | |||| ||||| ||||| |||| |||| Sbjct 70812 TCTTCGGTTACCAGATGCGCTTCGACCTTTCCGAAGGTTTTCCGGTTCTCACCACCAAGA 70753 Query 142301 AGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACA 142360 ||||||||||| || |||||| ||| | ||||||||||| || |||||||| || | Sbjct 70752 AGCTGCATCTGCGCTCCATCATCCATGAATTGCTGTGGTTCCTGAAGGGCGATACCAATA 70693 Query 142361 TCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCA 142420 || ||||| | || || ||| |||||||| |||||||| || | || ||| Sbjct 70692 TCGCCTATCTCAAGGAAAACGGCGTTTCCATCTGGGACGAATGGGCCGACGAGAACGGCG 70633 Query 142421 ACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAG 142480 | ||||| || ||||| || ||||||| |||||| | | ||| || Sbjct 70632 ATCTCGGCCCGGTCTATGGTGCGCAGTGGCGTTCCTGGCC----------GGCGCCGG-- 70585 Query 142481 ATGACGTCACAGACGAACCGATCGATCAGATC-CGC--CGGATCATTACTGACTTGAAGA 142537 || | || | ||||| |||||| ||| | |||| | | | |||||| Sbjct 70584 --------ACGGCCG-CCATATCGACCAGATCGCGCTTCTGATC--GAGGGTC-TGAAGA 70537 Query 142538 AGTCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACA 142597 || |||| |||||||||||||| | ||||||||||| || || ||||| | Sbjct 70536 CCAACCCGAATTCCCGTCGTCACATCGTTTCGGCGTGGAACCCGGCGCTGGTGGACGAAA 70477 Query 142598 TGGCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGT---CGACTCGAAGAAGCGTC 142654 |||| | || || |||||| ||||||| ||| | || ||| | || ||| | Sbjct 70476 TGGCGTTGCCGCCCTGTCACTGCCTGTTCCAGTTCTATGTTTCCGA-TGGA--AAG---C 70423 Query 142655 TGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTG 142714 |||| |||||||| |||||||| || || || ||||||||||| ||||||||||| | Sbjct 70422 TGTCCTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTCAACATCG 70363 Query 142715 CTTCGTACGCGCTTCTCACAC 142735 | || || ||||| || |||| Sbjct 70362 CCTCCTATGCGCTGCTGACAC 70342 >seq6415 Length=247467 Score = 174 bits (192), Expect = 2e-38 Identities = 382/570 (67%), Gaps = 38/570 (7%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| | ||||| || ||| ||||||| | ||||| || |||| || | |||||| Sbjct 52999 TTCGGCCGGCAGATCCGCTTCGATCTGGCCAAGGGCTTCCCGGTTCTGACCTCCAAGAAG 53058 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 ||||| ||| ||||||||| |||| || ||||||||||| || ||||| || |||||| Sbjct 53059 CTGCACCTGCGCTCGATCATCATCGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATC 53118 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 || || | || || ||| |||||||| || ||||| || | || ||| | Sbjct 53119 GCCTACCTCAAGGACAACGGCGTGCGCATCTGGGACGAGTGGGCCGACGAAAACGGCGAT 53178 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 || || || |||||||||||||||||| || ||| ||| ||| || Sbjct 53179 CTTGGCCCGGTCTACGGCAAGCAGTGGCGCTCGTGGGCGA----------CGCCGG---- 53224 Query 142483 GACGTCACAGACGAACCGATCGATCAGAT---CCGCCGGATCATTACTGACTTGAAGAAG 142539 || | || |||||| ||||| | || | || | || | |||| Sbjct 53225 ------ACGGGCG-CGTGATCGACCAGATCGCCAACCTGGTCGAAA---ACCTAAAGACC 53274 Query 142540 TCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATG 142599 ||| || || ||||||||||| || |||||||| || || |||||||||||| Sbjct 53275 AATCCAAGCAGCCGCCGCCACATCGTCACGGCCTGGAACCCCGCCGATGTCGACGACATG 53334 Query 142600 GCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCA 142659 || || || || || ||| ||||||| ||| ||||| || | | | ||| Sbjct 53335 GCCCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTTCGTCG--CGGACGGAAAG-CTGAGC 53391 Query 142660 TGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCG 142719 |||||||| ||||| || || ||| |||| | || || ||||||||||| || || Sbjct 53392 TGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATCGCCTCC 53451 Query 142720 TACGCGCTTCTCACACAGCTCATTGCTCGCGAATG----CGGTCTGGAACTCGGAGACTT 142775 ||||| || || || | | || |||| || | ||| ||||| | || || || Sbjct 53452 TACGCCCTGCTGACCCTG----ATGGTCGCCAAGGTCGTCGGCCTGGAGCCGGGCGAGTT 53507 Query 142776 CGTCCACACCTTCGGCAATTCGCACATCTA 142805 |||||||||||||||| | | ||| |||| Sbjct 53508 CGTCCACACCTTCGGCGACGCCCACCTCTA 53537 >seq10734 Length=9239 Score = 163 bits (180), Expect = 3e-35 Identities = 155/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142252 CAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAGCTGCATCTG 142311 |||||||||||||| ||||| ||||||| || || || |||| ||||||||||| ||| Sbjct 1315 CAGATGCGTTTCAACCTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTG 1374 Query 142312 AAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATCAAGTATCTT 142371 ||||||||| ||| || ||||||||||| || ||||| || |||||| || || Sbjct 1375 CGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTG 1434 Query 142372 CACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAACCTCGGACCT 142431 | || || | || ||||||||| || ||||| || | ||||||| ||||||| || Sbjct 1435 AAGGACAACCAGGTACGGATCTGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCCG 1494 Query 142432 GTCTACGGCAAGCAGTGG 142449 |||||||||||||||||| Sbjct 1495 GTCTACGGCAAGCAGTGG 1512 >seq646 Length=687 Score = 114 bits (126), Expect = 1e-20 Identities = 175/245 (71%), Gaps = 11/245 (4%) Strand=Plus/Minus Query 142565 TCACCGCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTCCGTGTCACATGATGT 142624 ||||||| ||||| || || || |||||| | ||||| || || || |||||| ||| Sbjct 440 TCACCGCCTGGAATCCGGCCGATGTCGACAAGATGGCGCTGCCGCCCTGTCACTGCCTGT 381 Query 142625 TCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCATGCCAGCTGTATCAGCGTTCGGCAG 142684 | || ||| |||||| | ||| || ||||| |||||||| || ||||| ||||| | Sbjct 380 TTCAGTTCTACGTCGCC---AAGGGCCGGCTGTCCTGCCAGCTCTACCAGCGCTCGGCGG 324 Query 142685 ACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTCTCACACAGCTCATTG 142744 | |||||||||||| || |||||||| || || || || || || || || | | || Sbjct 323 ATGTGTTCCTCGGCGTGCCCTTCAACATCGCGTCCTATGCCCTGCTGAC-CA--TGA-TG 268 Query 142745 CTCGCGAATG----CGGTCTGGAACTCGGAGACTTCGTCCACACCTTCGGCAATTCGCAC 142800 ||||| | | || ||| | | ||| || ||||| || ||| |||| | ||||| Sbjct 267 GTCGCGCAGGTCACTGGCCTGAAGCCCGGCGAGTTCGTGCATACCCTCGGTGACGCGCAC 208 Query 142801 ATCTA 142805 |||| Sbjct 207 CTCTA 203 >seq9425 Length=520298 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 148825 CAGCTGCGCGGTTTCATCGAGCGTATNNNNNNNNNNGAAGAAGAGAAGAAGACGATCGGC 148884 ||| |||| | |||||||||| || || ||||||||||||||||||| | Sbjct 45884 CAGTTGCGGGCACTCATCGAGCGCATCGAGCGGCTCGAGGAAGAGAAGAAGACGATCGCC 45825 Query 148885 GATGACATCAAGGACGTCTACGGCGATGCCAAAGGAAATGGCTTCGACACCAA---GATC 148941 || ||||||||||||||||| | || ||||| || | |||||||||||||| |||| Sbjct 45824 GACGACATCAAGGACGTCTATGCGGAAGCCAAGGGTACGGGCTTCGACACCAAGGCGATC 45765 Query 148942 TTGAAGAAGGTCATCAACATCCGCAAGAAGGATGAGCAGGAGCGCATGGAAGAGGAAGCA 149001 | || | | | |||||| |||| || |||||| |||||| ||| | Sbjct 45764 CGCGCGCTGG---TGCGCCTGCGCAAGCAGGACCAGGCGGAGCGGCAGGAAGAAGAAACG 45708 Query 149002 ATCCTCGATACGTATCTCGCTGCTCTCGGCATG 149034 ||||||||| || || || ||||||||| Sbjct 45707 ATCCTCGATCTCTACAAAGCCGCGCTCGGCATG 45675 >seq9639 Length=103419 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| || |||||||| ||| | ||| | |||||||||| || || |||| |||||| Sbjct 4264 TTCGGCCACCAGATGCGCTTCGACCTGTCCGAAGGCTTTCCGCTGGTCACCACCAAGAAG 4205 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 |||| || ||||| |||||| | ||||| ||||||||||| ||||| | || | Sbjct 4204 GTGCACCTCAAGTCCATCATCCTGGAACTGCTGTGGTTCCTGCGCGGCGACAGCAATGTG 4145 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 | || || || | | | || |||||||| |||||||| | | ||| || Sbjct 4144 CGCTGGCTGCAGGAGCGCGGCTGCACCATCTGGGACGAATGGGCCCGCGAGGACGGCGAC 4085 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGG 142449 || || || ||||| ||| ||| ||| Sbjct 4084 CTGGGCCCGGTCTATGGCGTGCAATGG 4058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500404987281840