Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_025431.1 Length=45718 Score E Sequences producing significant alignments: (Bits) Value seq13452 183 9e-42 >seq13452 Length=61710 Score = 183 bits (202), Expect = 9e-42 Identities = 352/519 (68%), Gaps = 0/519 (0%) Strand=Plus/Minus Query 7923 GACGGTTCTGGCTGATCCTCCTTGGCGCTTTCAGAACAGCACAGGCAAAGTTGCACCAGA 7982 |||| |||| || ||||| || |||| ||||| ||| |||| ||||||||||| ||||| Sbjct 54075 GACGATTCTTGCCGATCCCCCGTGGCAATTTCAAAACCGCACCGGCAAAGTTGCGCCAGA 54016 Query 7983 GCACCGTCGCCTTAGCCGCTATGGCACGTTGTCGCTTCCAGAGATCGAGGCGTTGCCAGT 8042 || || || |||| || ||||| || || | ||| || ||| |||| | || || Sbjct 54015 ACATCGCCGGCTTAATCGTTATGGGACTATGACCCTTGATGACATCAAGGCTCTCCCTGT 53956 Query 8043 TGCGGAGATCGTAAAAGAGCCATCTCATCTTTATCTATGGGTACCGAACGCCCTCCTGGC 8102 ||| || ||| | | || ||||||||||||| ||||| ||||| || || || | Sbjct 53955 TGCCGATGTCGCGGACAATCCGGCTCATCTTTATCTTTGGGTGCCGAATGCACTTTTGCC 53896 Query 8103 GGAAGGACTGTCCGTGATGGCGGCGTGGGGCTTCACATACAAATCGAACATCGTGTGGCA 8162 |||||| | ||| | ||| ||||| || ||| ||||| ||||| |||||||| Sbjct 53895 GGAAGGTATCGAAGTGCTTCGGGCCTGGGGTTTTGAATATAAATCCAACATTGTGTGGCA 53836 Query 8163 CAAAATCCGCAAAGACGGCGGGTCAGACGGTCGCGGCGTCGGCTTTTATTTCCGGAATGT 8222 |||| | || || || ||||| || || || || || || || |||||||| ||||| Sbjct 53835 CAAAGTTCGAAAGGATGGCGGCAGCGATGGGCGAGGTGTAGGATTCTATTTCCGTAATGT 53776 Query 8223 GACCGAGATTATCCTGTTTGGGACAAAGGGAAAAAACGCCAGAACACTCGCACCCGGTCG 8282 ||||| || |||| ||||| || ||| || | || ||| || || || Sbjct 53775 AACCGAACTTGTCCTTTTTGGCGTTCGTGGGAAAGGTGCTCGCACTCTCCAGCCAGGCCG 53716 Query 8283 CACCCAAGTGAACTACATCTCTTCGCAGAAGCGGGAGCACTCACGCAAACCAGATGAACT 8342 || || || || | | || ||| || || ||||| ||||| ||||| ||| | Sbjct 53715 GACTCAGGTCAATTTGCTGGCTACGCGCAAACGCGAGCATAGCCGCAAGCCAGACGAATT 53656 Query 8343 TTATCCAATCATCGAAGCGTGTTCGTCAGGCCCGTATCTGGAACTTTTTGGTCGCGGTAT 8402 ||| ||| ||||||| || | || || |||||| | |||| || |||| Sbjct 53655 CTATAATATCGTCGAAGCATGCAGTCCTGGTGCGAGACTGGAAATGTTTGCGCGTGGTAC 53596 Query 8403 TAGAAAGGGGTGGGCGACTTGGGGCAATCAAGCGGACGA 8441 | |||| ||| || | |||||||| || || || || Sbjct 53595 ACGTGAGGGATGGTCGGCGTGGGGCAACCAGGCTGATGA 53557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146149859985440