Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_025434.1
Length=62699
Score E
Sequences producing significant alignments: (Bits) Value
seq9795 96.9 1e-15
seq8065 91.5 6e-14
seq659 91.5 6e-14
>seq9795
Length=220374
Score = 96.9 bits (106), Expect = 1e-15
Identities = 113/152 (74%), Gaps = 3/152 (2%)
Strand=Plus/Minus
Query 2948 AAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATAATGCGGGACCAGCCATCAACGCC 3007
||| ||||||||||| || ||| | | |||||| || ||||| | ||||||||| || ||
Sbjct 198543 AAACTCCATGCCATCGAATTGCGGATGTTCGTTCATGATGCGTGTCCAGCCATCTACACC 198484
Query 3008 CACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCATGG 3067
|| |||||||| |||||| |||||| || |||||||||| ||||| | ||
Sbjct 198483 AACAACCGGAACAATGCCG---CCCTTATCTGGATAGGCGTAAATCTCTTTAACAAAGGG 198427
Query 3068 ATTAAGGCCGTACTGGTTGGCAACGATCAGCA 3099
||| | || || | ||| ||||| |||| ||
Sbjct 198426 ATTTAATCCATATTCGTTTGCAACAATCATCA 198395
>seq8065
Length=27066
Score = 91.5 bits (100), Expect = 6e-14
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 2948 AAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATAATGCGGGACCAGCCATCAACGCC 3007
||| |||| ||||||||| | || | || | ||||| |||||||||||||| ||
Sbjct 26813 AAATTCCAAGCCATCAAAATTAGGGCTACTATTTACGATGCGCGACCAGCCATCAACACC 26754
Query 3008 CACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCATGG 3067
|| || || | || || || | ||||||||||| || || |||||||| ||||| ||
Sbjct 26753 AACAACAGGGATTATCCCTTTATTTTTATCAGGGAAAGCATATATTTCTTTGGTCCACGG 26694
Query 3068 ATTAAGGCCGTACTGGTTGGCAACGATCAGCAA 3100
|||||| || ||| |||||||||| |||
Sbjct 26693 ATTAAGCTTATATTGGCCTGCAACGATCAACAA 26661
>seq659
Length=6232
Score = 91.5 bits (100), Expect = 6e-14
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 2948 AAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATAATGCGGGACCAGCCATCAACGCC 3007
||| |||| ||||||||| | | | || | |||||| ||||| |||||||| ||
Sbjct 866 AAATTCCAAGCCATCAAAGTTAGGACTACTATTTACAATGCGTGACCAACCATCAACACC 925
Query 3008 CACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCATGG 3067
|| || || | ||| || || | ||||||||||||||||| || || || ||||| ||
Sbjct 926 AACAACAGGTATGATTCCTTTATTTTTATCAGGGAAGGCGTATATCTCCTTAGTCCAAGG 985
Query 3068 ATTAAGGCCGTACTGGTTGGCAACGATCAGCAA 3100
|||||| || ||| |||||||||| |||
Sbjct 986 ATTAAGCTTATATTGGCCTGCAACGATCAACAA 1018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 200475199719340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |