Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_025440.1 Length=134369 Score E Sequences producing significant alignments: (Bits) Value seq10153 271 7e-68 >seq10153 Length=9971 Score = 271 bits (300), Expect = 7e-68 Identities = 641/963 (67%), Gaps = 4/963 (0%) Strand=Plus/Plus Query 75663 CTCATAAGTCATCGAACCCATTGTCTAAGTTTGTTTTCTTGTAACTAGAGTTACGCATTT 75722 |||| | ||||||||| || ||||| | ||| || ||||||||||| | || ||||| | Sbjct 6717 CTCAGAGGTCATCGAAGCCGTTGTCGACGTTGGTCTTCTTGTAACTTGCATTGCGCATCT 6776 Query 75723 CGAAAAAGTCGGTTTTTGTTTCTGTAAAGTTATCGGCGTAAGCTTTAATCCATGTCATAG 75782 |||| |||||||| || ||||| || ||||| |||||||| || || ||||| | ||| Sbjct 6777 CGAAGAAGTCGGTCTTGGTTTCGGTGAAGTTGTCGGCGTAGGCCTTGATCCACGGCATCA 6836 Query 75783 AATTTTCTGT-GTGACCTTGATACATTGGTTGAAGACCTAGCATCCCTAACATTTTATTA 75841 || || || ||| | || |||| | | | || ||||| || ||| || || Sbjct 6837 CGTTGTCGGTGGTGTCGCTG-TACAGGCGCTCGATGCCGAGCATGCCGGCCATCTTGTTG 6895 Query 75842 GCACGATATTTTACATAGTCTAACATCTCTTCCACATCAATTCCTTCAATGCCCTGTAGT 75901 || || || || || ||| | |||||| ||||| || || || || || || | || Sbjct 6896 GCGCGGTACTTCACGTAGCGCACCATCTCGTCCACGTCGATGCCGTCGATACCGTCCAGC 6955 Query 75902 ACCTCACTAGACCAC-GCTTGTTCTAGCTCTACGGCATGTCTAAAAGAAGCATACACGTA 75960 ||||| |||||| || | || ||||| | || ||| || || | |||||| Sbjct 6956 ACCTCCGACGACCACTGCGT-CTCCAGCTCGATCGCGTGTTCGAATGATTGGTGCACGTA 7014 Query 75961 GTCATTTAGTTCATCTGTTTGTAGTTCAGGGTTTTCCCCTACAATAGCTCTAATTAGCTC 76020 | | | || || | || || || |||||||| || || | || || | || | ||| Sbjct 7015 GGCGGTCAGCTCGTTGGTCTGCAGCTCAGGGTTCTCGCCGATGATGGCGCGGATCAACTC 7074 Query 76021 AGAAATAAACTTCGAATGGGCTAACTCATCACGATTAATGAAGCTAATGATTTTACCTGT 76080 || ||||| | ||| || | ||| || || || |||||||| ||||| || || || Sbjct 7075 GCTGATGAACTTGGTATGCGCCAGCTCGTCGCGGTTGATGAAGCTGATGATCTTGCCGGT 7134 Query 76081 TCCCGTCATCTTGTTTTGACGAACAAGGTTATAGAAGTAAGCAAAACCGCTGTAGAAATT 76140 || |||| ||| || || || | ||| |||||||| || |||||| ||||| || Sbjct 7135 GCCGTTCATGCGGTTCTGCCGCACCATGTTGTAGAAGTAGGCGAAACCGGAATAGAAGTT 7194 Query 76141 AATACCCTCTAAGATAGATGATTGTACTAAAGCTTTTACCATATTCTCAGGTGTTTTGTT 76200 || || || | ||| || || || | | | || | || |||| | || || | Sbjct 7195 GATGCCTTCCAGGATCGAGGACTGGATCAGCGACTTCAGCAGGGTCTCGGCGGTCTTCTC 7254 Query 76201 ATTCATGAAATCGTCATAAGACTTCATAATAGGTGCATTACGTTTAATAATCGTAGGGTG 76260 |||||| |||||||| | ||| || ||||| || || || || || || ||||| Sbjct 7255 GCGCATGAAGTCGTCATACGCGCCCATGATCGGTGCGTTGCGCTTGATGATGGTCGGGTG 7314 Query 76261 TGTTCTAGCTTCCTCAAATACTCGATTCTGCTCTTGTAAGTTAGTAATAGAAGCAAGTAC 76320 || | || ||| || | || ||||| | | | || || || || || || || Sbjct 7315 GGTGCGGGCGATCTCGAAGATGCGGTTCTGGTTCGGCAGGTCGGTGATCGAGGCCAGCAC 7374 Query 76321 ATAAGAATAACTCTCATTATGAATAGCTTCTTGTTGTGCAATAATAGCTGTAATAGCATG 76380 || || ||||| || || || |||| || || | || || |||| | | ||||| Sbjct 7375 GTAGCTGTAGCTCTCGTTGTGGATCACTTCCTGCTGGCCGATGATCGCTGCATTGGCATG 7434 Query 76381 AACAGAGGCATCACTGACATACTCTGCGATATTATAAATAAAACGTGTTTGGGGTGAGTC 76440 | | | || | | ||||| || | || || || || || || || |||||||| Sbjct 7435 CGCCGCTGGGTCGGTAATGTACTCGGCCACGTTGTAGATGAAGCGGGTCTGCGGTGAGTC 7494 Query 76441 AAGTGTAGCTAAAAGTCCGATAATGGAGTCAAACGCATATTTCTCTTCTTCGGATAAGTG 76500 || || || | || ||||| || ||||| | || | || || | || | | Sbjct 7495 GAGCGTGGCGAGCAGGCCGATGATCGAGTCGTAGGCGTTCTTTTCGCGTGCGTTGAGCTC 7554 Query 76501 GTTGTACTGTTTGGCATCGCTCTTCATATCTACCTCATCAGGCAACCAGTAATTTGTAGT 76560 | |||||| ||||||| |||||| || ||||| || || | |||| | || || | Sbjct 7555 GCCGTACTGGCGGGCATCGAGCTTCATGTCGACCTCGTCGGGAATCCAGAAGTTGGTCGA 7614 Query 76561 TAACTCTTTGTAAGCTCGATAGAAAGATGGATACCGAATATCGTTCCAGTTTACGATACC 76620 | ||| ||||| || |||||||| || || ||| |||| ||||||||||| | ||| || Sbjct 7615 CAGCTCCTTGTAGGCCCGATAGAACGACGGGTACGGAATGTCGTTCCAGTTGAGGATGCC 7674 Query 76621 ACT 76623 || Sbjct 7675 GCT 7677 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 78030 TCATAGTAGTCTTGTAGGTACCAGCCTTTTTTCTGCTTAACCTCGTAAGGGTCAAATAAA 78089 || ||| |||| || ||||||||||| || |||||| ||||||| ||||| || | Sbjct 8974 TCGTAGAAGTCCTGCAGGTACCAGCCCTTGGCCTGCTTCACCTCGTGCGGGTCGAACAGG 9033 Query 78090 TACCATTCCCCTCTATTCTCTACAGCTTCCATAAATAAATCAGGAATAGAAACAGAAGTA 78149 ||||| || | | | || || |||||||| || | || || | | || || || Sbjct 9034 TACCAGTCGGCGCGACGTTCGACCGCTTCCATGAACAGGTCGGGCACGCACACCGAGGTG 9093 Query 78150 AAAATGTCGTGAGCTCGTAAACGTTGGTCTCCGTTGTTTAGTCTTAAATCCAGAAAGGCT 78209 || | ||||| || || | || ||||| |||||||| || | | |||| |||||| Sbjct 9094 AACACATCGTGCGCGCGCAGGCGCTGGTCGCCGTTGTTGAGGCGCAGGTCCATGAAGGCT 9153 Query 78210 TCTATATC 78217 || ||||| Sbjct 9154 TCGATATC 9161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429777107856670