Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_025440.1
Length=134369
Score E
Sequences producing significant alignments: (Bits) Value
seq10153 271 7e-68
>seq10153
Length=9971
Score = 271 bits (300), Expect = 7e-68
Identities = 641/963 (67%), Gaps = 4/963 (0%)
Strand=Plus/Plus
Query 75663 CTCATAAGTCATCGAACCCATTGTCTAAGTTTGTTTTCTTGTAACTAGAGTTACGCATTT 75722
|||| | ||||||||| || ||||| | ||| || ||||||||||| | || ||||| |
Sbjct 6717 CTCAGAGGTCATCGAAGCCGTTGTCGACGTTGGTCTTCTTGTAACTTGCATTGCGCATCT 6776
Query 75723 CGAAAAAGTCGGTTTTTGTTTCTGTAAAGTTATCGGCGTAAGCTTTAATCCATGTCATAG 75782
|||| |||||||| || ||||| || ||||| |||||||| || || ||||| | |||
Sbjct 6777 CGAAGAAGTCGGTCTTGGTTTCGGTGAAGTTGTCGGCGTAGGCCTTGATCCACGGCATCA 6836
Query 75783 AATTTTCTGT-GTGACCTTGATACATTGGTTGAAGACCTAGCATCCCTAACATTTTATTA 75841
|| || || ||| | || |||| | | | || ||||| || ||| || ||
Sbjct 6837 CGTTGTCGGTGGTGTCGCTG-TACAGGCGCTCGATGCCGAGCATGCCGGCCATCTTGTTG 6895
Query 75842 GCACGATATTTTACATAGTCTAACATCTCTTCCACATCAATTCCTTCAATGCCCTGTAGT 75901
|| || || || || ||| | |||||| ||||| || || || || || || | ||
Sbjct 6896 GCGCGGTACTTCACGTAGCGCACCATCTCGTCCACGTCGATGCCGTCGATACCGTCCAGC 6955
Query 75902 ACCTCACTAGACCAC-GCTTGTTCTAGCTCTACGGCATGTCTAAAAGAAGCATACACGTA 75960
||||| |||||| || | || ||||| | || ||| || || | ||||||
Sbjct 6956 ACCTCCGACGACCACTGCGT-CTCCAGCTCGATCGCGTGTTCGAATGATTGGTGCACGTA 7014
Query 75961 GTCATTTAGTTCATCTGTTTGTAGTTCAGGGTTTTCCCCTACAATAGCTCTAATTAGCTC 76020
| | | || || | || || || |||||||| || || | || || | || | |||
Sbjct 7015 GGCGGTCAGCTCGTTGGTCTGCAGCTCAGGGTTCTCGCCGATGATGGCGCGGATCAACTC 7074
Query 76021 AGAAATAAACTTCGAATGGGCTAACTCATCACGATTAATGAAGCTAATGATTTTACCTGT 76080
|| ||||| | ||| || | ||| || || || |||||||| ||||| || || ||
Sbjct 7075 GCTGATGAACTTGGTATGCGCCAGCTCGTCGCGGTTGATGAAGCTGATGATCTTGCCGGT 7134
Query 76081 TCCCGTCATCTTGTTTTGACGAACAAGGTTATAGAAGTAAGCAAAACCGCTGTAGAAATT 76140
|| |||| ||| || || || | ||| |||||||| || |||||| ||||| ||
Sbjct 7135 GCCGTTCATGCGGTTCTGCCGCACCATGTTGTAGAAGTAGGCGAAACCGGAATAGAAGTT 7194
Query 76141 AATACCCTCTAAGATAGATGATTGTACTAAAGCTTTTACCATATTCTCAGGTGTTTTGTT 76200
|| || || | ||| || || || | | | || | || |||| | || || |
Sbjct 7195 GATGCCTTCCAGGATCGAGGACTGGATCAGCGACTTCAGCAGGGTCTCGGCGGTCTTCTC 7254
Query 76201 ATTCATGAAATCGTCATAAGACTTCATAATAGGTGCATTACGTTTAATAATCGTAGGGTG 76260
|||||| |||||||| | ||| || ||||| || || || || || || |||||
Sbjct 7255 GCGCATGAAGTCGTCATACGCGCCCATGATCGGTGCGTTGCGCTTGATGATGGTCGGGTG 7314
Query 76261 TGTTCTAGCTTCCTCAAATACTCGATTCTGCTCTTGTAAGTTAGTAATAGAAGCAAGTAC 76320
|| | || ||| || | || ||||| | | | || || || || || || ||
Sbjct 7315 GGTGCGGGCGATCTCGAAGATGCGGTTCTGGTTCGGCAGGTCGGTGATCGAGGCCAGCAC 7374
Query 76321 ATAAGAATAACTCTCATTATGAATAGCTTCTTGTTGTGCAATAATAGCTGTAATAGCATG 76380
|| || ||||| || || || |||| || || | || || |||| | | |||||
Sbjct 7375 GTAGCTGTAGCTCTCGTTGTGGATCACTTCCTGCTGGCCGATGATCGCTGCATTGGCATG 7434
Query 76381 AACAGAGGCATCACTGACATACTCTGCGATATTATAAATAAAACGTGTTTGGGGTGAGTC 76440
| | | || | | ||||| || | || || || || || || || ||||||||
Sbjct 7435 CGCCGCTGGGTCGGTAATGTACTCGGCCACGTTGTAGATGAAGCGGGTCTGCGGTGAGTC 7494
Query 76441 AAGTGTAGCTAAAAGTCCGATAATGGAGTCAAACGCATATTTCTCTTCTTCGGATAAGTG 76500
|| || || | || ||||| || ||||| | || | || || | || | |
Sbjct 7495 GAGCGTGGCGAGCAGGCCGATGATCGAGTCGTAGGCGTTCTTTTCGCGTGCGTTGAGCTC 7554
Query 76501 GTTGTACTGTTTGGCATCGCTCTTCATATCTACCTCATCAGGCAACCAGTAATTTGTAGT 76560
| |||||| ||||||| |||||| || ||||| || || | |||| | || || |
Sbjct 7555 GCCGTACTGGCGGGCATCGAGCTTCATGTCGACCTCGTCGGGAATCCAGAAGTTGGTCGA 7614
Query 76561 TAACTCTTTGTAAGCTCGATAGAAAGATGGATACCGAATATCGTTCCAGTTTACGATACC 76620
| ||| ||||| || |||||||| || || ||| |||| ||||||||||| | ||| ||
Sbjct 7615 CAGCTCCTTGTAGGCCCGATAGAACGACGGGTACGGAATGTCGTTCCAGTTGAGGATGCC 7674
Query 76621 ACT 76623
||
Sbjct 7675 GCT 7677
Score = 82.4 bits (90), Expect = 7e-11
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 78030 TCATAGTAGTCTTGTAGGTACCAGCCTTTTTTCTGCTTAACCTCGTAAGGGTCAAATAAA 78089
|| ||| |||| || ||||||||||| || |||||| ||||||| ||||| || |
Sbjct 8974 TCGTAGAAGTCCTGCAGGTACCAGCCCTTGGCCTGCTTCACCTCGTGCGGGTCGAACAGG 9033
Query 78090 TACCATTCCCCTCTATTCTCTACAGCTTCCATAAATAAATCAGGAATAGAAACAGAAGTA 78149
||||| || | | | || || |||||||| || | || || | | || || ||
Sbjct 9034 TACCAGTCGGCGCGACGTTCGACCGCTTCCATGAACAGGTCGGGCACGCACACCGAGGTG 9093
Query 78150 AAAATGTCGTGAGCTCGTAAACGTTGGTCTCCGTTGTTTAGTCTTAAATCCAGAAAGGCT 78209
|| | ||||| || || | || ||||| |||||||| || | | |||| ||||||
Sbjct 9094 AACACATCGTGCGCGCGCAGGCGCTGGTCGCCGTTGTTGAGGCGCAGGTCCATGAAGGCT 9153
Query 78210 TCTATATC 78217
|| |||||
Sbjct 9154 TCGATATC 9161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429777107856670
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |