Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq7835 109 1e-18 seq8237 104 5e-17 seq9956 102 2e-16 seq11739 100 6e-16 seq11149 89.7 1e-12 >seq7835 Length=204203 Score = 109 bits (120), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 73497 GTGGCAGAGTGGTTTAATGCAACGGTCTTGAAAACCGTCGAGGGTGAAAGTCCTCCGTGA 73556 ||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||||||| Sbjct 60571 GTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTGTGAGTCCTCCGTGA 60630 Query 73557 GTTCAAATCTCACCTTCACCGCCAA 73581 |||| ||||||||| ||||||| Sbjct 60631 GTTCGAATCTCACCGCTTCCGCCAA 60655 >seq8237 Length=506431 Score = 104 bits (114), Expect = 5e-17 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 73497 GTGGCAGAGTGGTTTAATGCAACGGTCTTGAAAACCGTCGAGGGTGAAAGTCCTCCGTGA 73556 ||||||||| ||||||||||| ||||||||||||| | |||||||| |||||||||||| Sbjct 133629 GTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACGGACGAGGGTGTGAGTCCTCCGTGA 133570 Query 73557 GTTCAAATCTCACCTTCACCGCCAA 73581 |||| ||||||||| ||||||| Sbjct 133569 GTTCGAATCTCACCGCTTCCGCCAA 133545 Score = 102 bits (112), Expect = 2e-16 Identities = 181/263 (69%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 257250 TAGCCCGTACTGAGCGTAAAACTGGTACTGGATATGGTGGCTTTGAAGTGGATACAAA-- 257307 |||||||||||||||||||| | || || ||| ||| ||||| | ||| | Sbjct 174047 TAGCCCGTACTGAGCGTAAATCAGGACACGGTTATCATGGATTTGAGTTTTTTACCGATC 174106 Query 257308 -AGGCGTAACACTAGAACAAGATTTGTATCGCCGTGACCTTACAATTAATGCAATTGCGT 257366 || || || ||||| | ||||| ||| |||||| | || || ||||| |||||| Sbjct 174107 CAGATGTCACCTTAGAAGAGGATTTAATTCGTCGTGACTTAACCATCAATGCCATTGCGA 174166 Query 257367 ATGATCCAGTACTACAAATTCACATCGATCCATACGGTGGTAAAGCTGATATCAAGAACA 257426 ||| || | ||| | | ||||| || ||| ||| |||| | | | | Sbjct 174167 TGGATGAAGCAGGTCAAGTGTA---TGATCCTTATCATGGACAAGATGATTTAGCGCATA 174223 Query 257427 AGATACTACGTCATGTTTCTGACCATTTTAAAGAAGATCCATTACGCGTGTTACGTCTTG 257486 | || |||||||| ||||| ||| |||| ||||||||| |||||||| | ||| | | Sbjct 174224 AAATCCTACGTCACGTTTCAGACGCTTTTGCAGAAGATCCGTTACGCGTACTGCGTGTGG 174283 Query 257487 CTCGATTTGCTACTCGTTATTCA 257509 |||| |||||| |||||||| || Sbjct 174284 CTCGTTTTGCTGCTCGTTATGCA 174306 >seq9956 Length=123604 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 73496 AGTGGCAGAGTGGTTTAATGCAACGGTCTTGAAAACCGTCGAGGGTGAAAGTCCTCCGTG 73555 |||||||||| |||||||||| || ||||||||||| ||||||||| | | |||||||| Sbjct 93372 AGTGGCAGAGCGGTTTAATGCTACAGTCTTGAAAACTGTCGAGGGTTCACGCCCTCCGTG 93313 Query 73556 AGTTCAAATCTCACCTTCACCGCCAA 73581 ||||| |||||||||| ||||||| Sbjct 93312 AGTTCGAATCTCACCTCTTCCGCCAA 93287 >seq11739 Length=237542 Score = 100 bits (110), Expect = 6e-16 Identities = 121/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 279387 ATCAACGCTCCGCTGATCTATTTTTAGGAGTTCCATTTAATATCAGTAGTTACTCACTAC 279446 ||||||| || ||| | || ||||| || ||||||||||| || || | |||| Sbjct 8940 ATCAACGTAGTGCAGATGTTTTCTTAGGGGTGCCATTTAATATTGCCAGCTATGCTCTAC 8881 Query 279447 TAACTCATATGATTGCACAAATTACTGGTTTAGATGTTGGTGAATTTATTTGGAATGGTG 279506 | ||||||||| |||| ||| || |||||||| || ||||| ||| | |||| ||| | Sbjct 8880 TGACTCATATGGTTGCTCAAGTTTGTGGTTTAGGCGTAGGTGATTTTGTCTGGACTGGCG 8821 Query 279507 GTGATTGTCACATTTATA--AAAACCACGTTGAACAAGTAAAA 279547 ||||| |||||||||| ||||| ||||||||| |||| Sbjct 8820 GTGAT--ACACATTTATATGTTAACCATTTTGAACAAGCAAAA 8780 >seq11149 Length=204457 Score = 89.7 bits (98), Expect = 1e-12 Identities = 245/370 (66%), Gaps = 14/370 (4%) Strand=Plus/Minus Query 299037 GGTGCATTGACTGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATTTG 299096 || |||||| ||| ||||| || || |||||||| |||||| ||||| | | | | Sbjct 131079 GGCGCATTGGTTGCAGGTACAAAATACCGTGGTGACTTTGAAAAACGCTTGAAACAGCTT 131020 Query 299097 CTAAAAGAACT---AAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATT 299153 || || | | |||||||| ||| | ||| | || ||||||||||||||||| Sbjct 131019 CTCAATGCTTTGAAAAAGAAACCAGAAG---CAATTTTATTTATTGATGAAATTCATATG 130963 Query 299154 ATGGTTGGGGCTGGTTCCGCAAGTAATG---GTTCTATGGACATGAGCAATATGCTTAAG 299210 || |||| ||||| | |||||| | || | |||||| ||| | |||| Sbjct 130962 ATCATTGGTGCTGG---CTCAAGTATGGGCAGTACCATGGACGCATCGAATTTAATTAAA 130906 Query 299211 CCAGCACTTTCACGTGGTGAGATT-CGTGTAATTGGTGCAACAACATATGATGAATATCG 299269 || || | | |||| || || ||| |||||| |||| || | | |||||||| Sbjct 130905 CCTGCGTTGGCGAATGGT-AGTTTACGTTGTATTGGTTCAACCACTTTCCAAGAATATCG 130847 Query 299270 TAAAAATATCGAGAAAGATAGTGCATTAACTCGTCGTTTTATGAAAATTGACGTAGTTGA 299329 || | || |||||| |||| || | |||||||| |||||||| || ||| Sbjct 130846 CCAAGTATTTGAAAAAGATCATGCACTATCACGTCGTTTCCAAAAAATTGATGTGAATGA 130787 Query 299330 GCCGACAATTGATGAAACTCGTGCAATTGTTAATGGTTTGAAACCAACGTATGAAAAATT 299389 ||| | ||| ||||| || ||| | |||||||||| | || |||| | || Sbjct 130786 GCCTTCTATTTCAGAAACAATTGATATTTTGCGTGGTTTGAAAAGCAAGTTTGAAGATTT 130727 Query 299390 CCATAATGTT 299399 |||| ||||| Sbjct 130726 CCATCATGTT 130717 Score = 86.0 bits (94), Expect = 1e-11 Identities = 168/245 (69%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 299751 TTTATGTTTGTTGGACCATCTGGTACTGGTAAAACAGAAATTACCAAAGCATTAGCAGAC 299810 ||| | |||| || || | ||| ||||||||||||| | |||||| ||| ||| | Sbjct 130362 TTTGTTTTTGCAGGGCCTACAGGTGTTGGTAAAACAGAAGTGACCAAACAATTGGCAAAA 130303 Query 299811 GCAACTGGTGCGGAACTCATTCGCTTTGATATGTCAGAATTTTCTCAAGAACATACTGTT 299870 |||| || || |||| || |||||||| |||| | | ||| ||||| Sbjct 130302 TTGCTGGGTGTAGAGCTTGTTCGTTTCGATATGTCTGAATATATGGAGCGTCATGCTGTT 130243 Query 299871 TCTAAACTAATTGGTTCACCTCCAGGTTATGTTGGTCATGATTCTGGTAACGGTTTACTG 299930 ||| | |||||| | |||||||||||||||||| ||||| ||| ||||||||| Sbjct 130242 TCTCGTTTGATTGGTGCGCCTCCAGGTTATGTTGGTTATGATCAAGGT---GGTTTACTG 130186 Query 299931 TTGGATAAAATTGAGCAG-TTCCCTAATGCAGTACTGTTACTTGATGAAATTGAAAAAGC 299989 || ||| | || ||| | || || ||||| | ||||||||||||||||| Sbjct 130185 ACTGACGCGATTCATAAGAATCCGCACTG-TGTCTTGTTATTAGATGAAATTGAAAAAGC 130127 Query 299990 AGATC 299994 | ||| Sbjct 130126 ACATC 130122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1114956035035271