Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_025447.1
Length=348532
Score E
Sequences producing significant alignments: (Bits) Value
seq7835 109 1e-18
seq8237 104 5e-17
seq9956 102 2e-16
seq11739 100 6e-16
seq11149 89.7 1e-12
>seq7835
Length=204203
Score = 109 bits (120), Expect = 1e-18
Identities = 75/85 (88%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 73497 GTGGCAGAGTGGTTTAATGCAACGGTCTTGAAAACCGTCGAGGGTGAAAGTCCTCCGTGA 73556
||||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||
Sbjct 60571 GTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTGTGAGTCCTCCGTGA 60630
Query 73557 GTTCAAATCTCACCTTCACCGCCAA 73581
|||| ||||||||| |||||||
Sbjct 60631 GTTCGAATCTCACCGCTTCCGCCAA 60655
>seq8237
Length=506431
Score = 104 bits (114), Expect = 5e-17
Identities = 74/85 (87%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 73497 GTGGCAGAGTGGTTTAATGCAACGGTCTTGAAAACCGTCGAGGGTGAAAGTCCTCCGTGA 73556
||||||||| ||||||||||| ||||||||||||| | |||||||| ||||||||||||
Sbjct 133629 GTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACGGACGAGGGTGTGAGTCCTCCGTGA 133570
Query 73557 GTTCAAATCTCACCTTCACCGCCAA 73581
|||| ||||||||| |||||||
Sbjct 133569 GTTCGAATCTCACCGCTTCCGCCAA 133545
Score = 102 bits (112), Expect = 2e-16
Identities = 181/263 (69%), Gaps = 6/263 (2%)
Strand=Plus/Plus
Query 257250 TAGCCCGTACTGAGCGTAAAACTGGTACTGGATATGGTGGCTTTGAAGTGGATACAAA-- 257307
|||||||||||||||||||| | || || ||| ||| ||||| | ||| |
Sbjct 174047 TAGCCCGTACTGAGCGTAAATCAGGACACGGTTATCATGGATTTGAGTTTTTTACCGATC 174106
Query 257308 -AGGCGTAACACTAGAACAAGATTTGTATCGCCGTGACCTTACAATTAATGCAATTGCGT 257366
|| || || ||||| | ||||| ||| |||||| | || || ||||| ||||||
Sbjct 174107 CAGATGTCACCTTAGAAGAGGATTTAATTCGTCGTGACTTAACCATCAATGCCATTGCGA 174166
Query 257367 ATGATCCAGTACTACAAATTCACATCGATCCATACGGTGGTAAAGCTGATATCAAGAACA 257426
||| || | ||| | | ||||| || ||| ||| |||| | | | |
Sbjct 174167 TGGATGAAGCAGGTCAAGTGTA---TGATCCTTATCATGGACAAGATGATTTAGCGCATA 174223
Query 257427 AGATACTACGTCATGTTTCTGACCATTTTAAAGAAGATCCATTACGCGTGTTACGTCTTG 257486
| || |||||||| ||||| ||| |||| ||||||||| |||||||| | ||| | |
Sbjct 174224 AAATCCTACGTCACGTTTCAGACGCTTTTGCAGAAGATCCGTTACGCGTACTGCGTGTGG 174283
Query 257487 CTCGATTTGCTACTCGTTATTCA 257509
|||| |||||| |||||||| ||
Sbjct 174284 CTCGTTTTGCTGCTCGTTATGCA 174306
>seq9956
Length=123604
Score = 102 bits (112), Expect = 2e-16
Identities = 74/86 (86%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 73496 AGTGGCAGAGTGGTTTAATGCAACGGTCTTGAAAACCGTCGAGGGTGAAAGTCCTCCGTG 73555
|||||||||| |||||||||| || ||||||||||| ||||||||| | | ||||||||
Sbjct 93372 AGTGGCAGAGCGGTTTAATGCTACAGTCTTGAAAACTGTCGAGGGTTCACGCCCTCCGTG 93313
Query 73556 AGTTCAAATCTCACCTTCACCGCCAA 73581
||||| |||||||||| |||||||
Sbjct 93312 AGTTCGAATCTCACCTCTTCCGCCAA 93287
>seq11739
Length=237542
Score = 100 bits (110), Expect = 6e-16
Identities = 121/163 (74%), Gaps = 4/163 (2%)
Strand=Plus/Minus
Query 279387 ATCAACGCTCCGCTGATCTATTTTTAGGAGTTCCATTTAATATCAGTAGTTACTCACTAC 279446
||||||| || ||| | || ||||| || ||||||||||| || || | ||||
Sbjct 8940 ATCAACGTAGTGCAGATGTTTTCTTAGGGGTGCCATTTAATATTGCCAGCTATGCTCTAC 8881
Query 279447 TAACTCATATGATTGCACAAATTACTGGTTTAGATGTTGGTGAATTTATTTGGAATGGTG 279506
| ||||||||| |||| ||| || |||||||| || ||||| ||| | |||| ||| |
Sbjct 8880 TGACTCATATGGTTGCTCAAGTTTGTGGTTTAGGCGTAGGTGATTTTGTCTGGACTGGCG 8821
Query 279507 GTGATTGTCACATTTATA--AAAACCACGTTGAACAAGTAAAA 279547
||||| |||||||||| ||||| ||||||||| ||||
Sbjct 8820 GTGAT--ACACATTTATATGTTAACCATTTTGAACAAGCAAAA 8780
>seq11149
Length=204457
Score = 89.7 bits (98), Expect = 1e-12
Identities = 245/370 (66%), Gaps = 14/370 (4%)
Strand=Plus/Minus
Query 299037 GGTGCATTGACTGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATTTG 299096
|| |||||| ||| ||||| || || |||||||| |||||| ||||| | | | |
Sbjct 131079 GGCGCATTGGTTGCAGGTACAAAATACCGTGGTGACTTTGAAAAACGCTTGAAACAGCTT 131020
Query 299097 CTAAAAGAACT---AAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATT 299153
|| || | | |||||||| ||| | ||| | || |||||||||||||||||
Sbjct 131019 CTCAATGCTTTGAAAAAGAAACCAGAAG---CAATTTTATTTATTGATGAAATTCATATG 130963
Query 299154 ATGGTTGGGGCTGGTTCCGCAAGTAATG---GTTCTATGGACATGAGCAATATGCTTAAG 299210
|| |||| ||||| | |||||| | || | |||||| ||| | ||||
Sbjct 130962 ATCATTGGTGCTGG---CTCAAGTATGGGCAGTACCATGGACGCATCGAATTTAATTAAA 130906
Query 299211 CCAGCACTTTCACGTGGTGAGATT-CGTGTAATTGGTGCAACAACATATGATGAATATCG 299269
|| || | | |||| || || ||| |||||| |||| || | | ||||||||
Sbjct 130905 CCTGCGTTGGCGAATGGT-AGTTTACGTTGTATTGGTTCAACCACTTTCCAAGAATATCG 130847
Query 299270 TAAAAATATCGAGAAAGATAGTGCATTAACTCGTCGTTTTATGAAAATTGACGTAGTTGA 299329
|| | || |||||| |||| || | |||||||| |||||||| || |||
Sbjct 130846 CCAAGTATTTGAAAAAGATCATGCACTATCACGTCGTTTCCAAAAAATTGATGTGAATGA 130787
Query 299330 GCCGACAATTGATGAAACTCGTGCAATTGTTAATGGTTTGAAACCAACGTATGAAAAATT 299389
||| | ||| ||||| || ||| | |||||||||| | || |||| | ||
Sbjct 130786 GCCTTCTATTTCAGAAACAATTGATATTTTGCGTGGTTTGAAAAGCAAGTTTGAAGATTT 130727
Query 299390 CCATAATGTT 299399
|||| |||||
Sbjct 130726 CCATCATGTT 130717
Score = 86.0 bits (94), Expect = 1e-11
Identities = 168/245 (69%), Gaps = 5/245 (2%)
Strand=Plus/Minus
Query 299751 TTTATGTTTGTTGGACCATCTGGTACTGGTAAAACAGAAATTACCAAAGCATTAGCAGAC 299810
||| | |||| || || | ||| ||||||||||||| | |||||| ||| ||| |
Sbjct 130362 TTTGTTTTTGCAGGGCCTACAGGTGTTGGTAAAACAGAAGTGACCAAACAATTGGCAAAA 130303
Query 299811 GCAACTGGTGCGGAACTCATTCGCTTTGATATGTCAGAATTTTCTCAAGAACATACTGTT 299870
|||| || || |||| || |||||||| |||| | | ||| |||||
Sbjct 130302 TTGCTGGGTGTAGAGCTTGTTCGTTTCGATATGTCTGAATATATGGAGCGTCATGCTGTT 130243
Query 299871 TCTAAACTAATTGGTTCACCTCCAGGTTATGTTGGTCATGATTCTGGTAACGGTTTACTG 299930
||| | |||||| | |||||||||||||||||| ||||| ||| |||||||||
Sbjct 130242 TCTCGTTTGATTGGTGCGCCTCCAGGTTATGTTGGTTATGATCAAGGT---GGTTTACTG 130186
Query 299931 TTGGATAAAATTGAGCAG-TTCCCTAATGCAGTACTGTTACTTGATGAAATTGAAAAAGC 299989
|| ||| | || ||| | || || ||||| | |||||||||||||||||
Sbjct 130185 ACTGACGCGATTCATAAGAATCCGCACTG-TGTCTTGTTATTAGATGAAATTGAAAAAGC 130127
Query 299990 AGATC 299994
| |||
Sbjct 130126 ACATC 130122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1114956035035271
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |