Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_025462.1 Length=99730 Score E Sequences producing significant alignments: (Bits) Value seq11739 129 4e-25 >seq11739 Length=237542 Score = 129 bits (142), Expect = 4e-25 Identities = 215/307 (70%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 19894 TGGGTTTGATCAGATTGAGTGGGTTATT-AATGAGATTAAAACAAACCCAACATCACGAA 19952 ||| ||||| || || ||| |||| | ||||| || || || || |||| ||||| Sbjct 9110 TGGTTTTGACCAAATC-AGTTGGTTGGTCAATGAAATCAAGACCAATCCAAACTCACGTC 9052 Query 19953 GATTAATTGTATCAGGTTGGAATCCTCATGATGTTGCAGATGTAGATTTACCACCTTGCC 20012 | || ||||| || || ||||| || |||| | | | || | ||||| || |||| Sbjct 9051 GTTTGATTGTGTCTGGCTGGAACCCAAATGAAGCAGGTAAAGTTGCCTTACCGCCATGCC 8992 Query 20013 ATACACTATTTCAATTCTTTGTGAAAGATGGTAAATTATCTTGCCAGTTGTATCAACGAA 20072 | || |||| ||||| ||||| | ||||| || || |||||||| | |||||||| | Sbjct 8991 ACACTTTATTCCAATTTTTTGTTCAGGATGGAAAGTTGTCTTGCCAACTTTATCAACGTA 8932 Query 20073 GTGCTGACTTATTACTTGGTGTTCCATTTAATATTGCATCTTATGCTTTACTTACACACT 20132 |||| || | || | || || |||||||||||||| |||||| |||| || || Sbjct 8931 GTGCAGATGTTTTCTTAGGGGTGCCATTTAATATTGCCAGCTATGCTCTACTGACTCATA 8872 Query 20133 TAGTTGCATTAGAATGTGGGCTTAATGTTGGTGAGTTTGTTTGGGTTGGTGGTGATTGCC 20192 | ||||| || ||||| | || ||||| ||||| ||| ||| |||||| | Sbjct 8871 TGGTTGCTCAAGTTTGTGGTTTAGGCGTAGGTGATTTTGTCTGGACTGGCGGTGAT--AC 8814 Query 20193 ACATTTA 20199 ||||||| Sbjct 8813 ACATTTA 8807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318952651376009