Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_025462.1
Length=99730
Score E
Sequences producing significant alignments: (Bits) Value
seq11739 129 4e-25
>seq11739
Length=237542
Score = 129 bits (142), Expect = 4e-25
Identities = 215/307 (70%), Gaps = 4/307 (1%)
Strand=Plus/Minus
Query 19894 TGGGTTTGATCAGATTGAGTGGGTTATT-AATGAGATTAAAACAAACCCAACATCACGAA 19952
||| ||||| || || ||| |||| | ||||| || || || || |||| |||||
Sbjct 9110 TGGTTTTGACCAAATC-AGTTGGTTGGTCAATGAAATCAAGACCAATCCAAACTCACGTC 9052
Query 19953 GATTAATTGTATCAGGTTGGAATCCTCATGATGTTGCAGATGTAGATTTACCACCTTGCC 20012
| || ||||| || || ||||| || |||| | | | || | ||||| || ||||
Sbjct 9051 GTTTGATTGTGTCTGGCTGGAACCCAAATGAAGCAGGTAAAGTTGCCTTACCGCCATGCC 8992
Query 20013 ATACACTATTTCAATTCTTTGTGAAAGATGGTAAATTATCTTGCCAGTTGTATCAACGAA 20072
| || |||| ||||| ||||| | ||||| || || |||||||| | |||||||| |
Sbjct 8991 ACACTTTATTCCAATTTTTTGTTCAGGATGGAAAGTTGTCTTGCCAACTTTATCAACGTA 8932
Query 20073 GTGCTGACTTATTACTTGGTGTTCCATTTAATATTGCATCTTATGCTTTACTTACACACT 20132
|||| || | || | || || |||||||||||||| |||||| |||| || ||
Sbjct 8931 GTGCAGATGTTTTCTTAGGGGTGCCATTTAATATTGCCAGCTATGCTCTACTGACTCATA 8872
Query 20133 TAGTTGCATTAGAATGTGGGCTTAATGTTGGTGAGTTTGTTTGGGTTGGTGGTGATTGCC 20192
| ||||| || ||||| | || ||||| ||||| ||| ||| |||||| |
Sbjct 8871 TGGTTGCTCAAGTTTGTGGTTTAGGCGTAGGTGATTTTGTCTGGACTGGCGGTGAT--AC 8814
Query 20193 ACATTTA 20199
|||||||
Sbjct 8813 ACATTTA 8807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318952651376009
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |