Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_025466.1 Length=40161 Score E Sequences producing significant alignments: (Bits) Value seq7305 95.1 3e-15 >seq7305 Length=28244 Score = 95.1 bits (104), Expect = 3e-15 Identities = 288/440 (65%), Gaps = 14/440 (3%) Strand=Plus/Minus Query 6481 TGTATCAACTGGCTATCGTGGTGGCACACTTCAAAGCTTGCATGTTTCGGAGTTCGGAAA 6540 ||| |||||| | |||||||| || || | |||||||||||||| || || || || Sbjct 22584 TGTTTCAACTTCATTCCGTGGTGGAACGCTATACAGCTTGCATGTTTCAGAATTTGGGAA 22525 Query 6541 GATATGCAAAAAGTATCCAGAGAAAGCACAGGAGATTGTTACAGGTGCGTTTAACTCAGT 6600 ||| || |||| |||| || |||||| | ||||||||||| ||||| ||| | | || Sbjct 22524 GATTTGTGCAAAGCATCCTGATAAAGCAAAAGAGATTGTTACTGGTGCATTTGAAGCTGT 22465 Query 6601 AGGCAAGAATGGCACGATAACAATCGAAAGTACCGCAGAGGGTAAGCAG-GGTTACTATT 6659 ||| ||| || | |||||||| ||||| || | |||| ||||| | | Sbjct 22464 TCCACTTGGTGGTCGGATTACTCTTGAAAGTACTGCAGAAGG-ACGCAGTGGTTATTTCT 22406 Query 6660 ATGACTATTGCACCATCGCCAAGAAGTTAAAAGACCAGGG----GCGCGAA--CCATCAG 6713 || | |||||| ||| | ||||||||| || || | || |||| | Sbjct 22405 ATCAATATTGCCAAGACGCTGAAAAGTTAAAACTTCAAGGTAAAACTTTAAACCCATTA- 22347 Query 6714 GAATGGAATTTAAATTTCATTTCTTCCCTTGGTGGAAAGATCCTGAATACTCACTAGAAG 6773 || ||| ||||| ||||||| | |||||||| | ||||||| | | || Sbjct 22346 GAGTGG-----AAATTCTTTTTCTTCTCATGGTGGAAGAACTCTGAATATCAAATCCCAG 22292 Query 6774 CTGGTGAGGTATCTAATAGATTAATCGAATACTTTACTGACCTTGAATCAAAGCATGATA 6833 | ||| |||| | |||||| |||||||| | || | || ||||| ||| Sbjct 22291 CAACAGAGATATCGGAACGATTAAAGGAATACTTCTCAGATTTAAAAGTTAAGCACAATA 22232 Query 6834 TTCATTTAACTGATGGTCAAAAGCGATGGTATGCAGCAAAGGAGGCTACTCAAGGCGATG 6893 |||| || || ||| || |||||||||| | || || ||| || |||| Sbjct 22231 TTCACACCACACCTGAACAACAGTCATGGTATGCATCCAAAGAAAAGACTTTGGGTGATG 22172 Query 6894 ATATGAAGCGTGAGTATCCA 6913 | || ||||| || |||||| Sbjct 22171 ACATCAAGCGAGAATATCCA 22152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128370639934234