Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_025466.1
Length=40161
Score E
Sequences producing significant alignments: (Bits) Value
seq7305 95.1 3e-15
>seq7305
Length=28244
Score = 95.1 bits (104), Expect = 3e-15
Identities = 288/440 (65%), Gaps = 14/440 (3%)
Strand=Plus/Minus
Query 6481 TGTATCAACTGGCTATCGTGGTGGCACACTTCAAAGCTTGCATGTTTCGGAGTTCGGAAA 6540
||| |||||| | |||||||| || || | |||||||||||||| || || || ||
Sbjct 22584 TGTTTCAACTTCATTCCGTGGTGGAACGCTATACAGCTTGCATGTTTCAGAATTTGGGAA 22525
Query 6541 GATATGCAAAAAGTATCCAGAGAAAGCACAGGAGATTGTTACAGGTGCGTTTAACTCAGT 6600
||| || |||| |||| || |||||| | ||||||||||| ||||| ||| | | ||
Sbjct 22524 GATTTGTGCAAAGCATCCTGATAAAGCAAAAGAGATTGTTACTGGTGCATTTGAAGCTGT 22465
Query 6601 AGGCAAGAATGGCACGATAACAATCGAAAGTACCGCAGAGGGTAAGCAG-GGTTACTATT 6659
||| ||| || | |||||||| ||||| || | |||| ||||| | |
Sbjct 22464 TCCACTTGGTGGTCGGATTACTCTTGAAAGTACTGCAGAAGG-ACGCAGTGGTTATTTCT 22406
Query 6660 ATGACTATTGCACCATCGCCAAGAAGTTAAAAGACCAGGG----GCGCGAA--CCATCAG 6713
|| | |||||| ||| | ||||||||| || || | || |||| |
Sbjct 22405 ATCAATATTGCCAAGACGCTGAAAAGTTAAAACTTCAAGGTAAAACTTTAAACCCATTA- 22347
Query 6714 GAATGGAATTTAAATTTCATTTCTTCCCTTGGTGGAAAGATCCTGAATACTCACTAGAAG 6773
|| ||| ||||| ||||||| | |||||||| | ||||||| | | ||
Sbjct 22346 GAGTGG-----AAATTCTTTTTCTTCTCATGGTGGAAGAACTCTGAATATCAAATCCCAG 22292
Query 6774 CTGGTGAGGTATCTAATAGATTAATCGAATACTTTACTGACCTTGAATCAAAGCATGATA 6833
| ||| |||| | |||||| |||||||| | || | || ||||| |||
Sbjct 22291 CAACAGAGATATCGGAACGATTAAAGGAATACTTCTCAGATTTAAAAGTTAAGCACAATA 22232
Query 6834 TTCATTTAACTGATGGTCAAAAGCGATGGTATGCAGCAAAGGAGGCTACTCAAGGCGATG 6893
|||| || || ||| || |||||||||| | || || ||| || ||||
Sbjct 22231 TTCACACCACACCTGAACAACAGTCATGGTATGCATCCAAAGAAAAGACTTTGGGTGATG 22172
Query 6894 ATATGAAGCGTGAGTATCCA 6913
| || ||||| || ||||||
Sbjct 22171 ACATCAAGCGAGAATATCCA 22152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 128370639934234
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |