Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_025830.1 Length=120938 Score E Sequences producing significant alignments: (Bits) Value seq8237 107 1e-18 >seq8237 Length=506431 Score = 107 bits (118), Expect = 1e-18 Identities = 278/411 (68%), Gaps = 17/411 (4%) Strand=Plus/Minus Query 37935 CGTAATGGATCTTCAATAAATGCCTGTGATGTATGACGTAATGTTTTAAGTCCTAAGTCA 37994 ||||| |||||||| ||| || | ||| ||||||| ||||| | |||| ||| Sbjct 174269 CGTAACGGATCTTCTGCAAAAGCGTCTGAAACGTGACGTAGGATTTTATGCGCTAAATCA 174210 Query 37995 ACCTGACCACCAAAAGGATCTATA-ATTTCACCACTCTCAACATCCATCGCCATGGAATT 38053 | || ||| | ||||||| ||| | || ||| ||| |||||||| |||| ||| Sbjct 174209 TCTTGTCCATGATAAGGATC-ATACACTTGACCTGCTTCA---TCCATCGCAATGGCATT 174154 Query 38054 GATGGTTAGGTCTCTACGTGCCAAATCCTCTTCCAGAGTTACATCTGGA---CTAAAGCA 38110 |||||||| ||| | ||| ||||||||||| | || ||||||||| ||| | Sbjct 174153 GATGGTTAAGTCACGACGAATTAAATCCTCTTCTAAGGTGACATCTGGATCGGTAA---A 174097 Query 38111 TACCTCAAATCCTTTATGGCCTTCACCTGTTTTTCTTTCTGTGCGTGCAAGAGCGTACTC 38170 | ||||||||| | || || | |||| ||| | || || || || || || || || Sbjct 174096 AAACTCAAATCCATGATAACCGTGTCCTGATTTACGCTCAGTACGGGCTAGGGCATATTC 174037 Query 38171 TTCTCTTGTTTCTGGGTGAAGATAAACTGGAAAAGATGCGCCAACTTGTGTGA-ACCCTC 38229 |||| |||||| || || | | | || || ||| | ||||| || ||| | ||| Sbjct 174036 TTCTTTTGTTTTGGGATGTAAAAACACAGGGAAATCTTTCCCAACGGGT-TGATAACCT- 173979 Query 38230 TTTTCAA-CATCTCTTCATGCGTAGCACCAACAACCACATAATCACGGTC-TGATATTTC 38287 | ||| | | || ||||||| |||||||| |||||||| || ||||| Sbjct 173978 TGGGCAAGAAGTTGCTCTGGCGTAGCGCCAACAACAACATAATCCTTTTCGTGATA-GGG 173920 Query 38288 ACGACCTAACAATTTATCTCTTACTGCGCCACCTACCAAGTATACCTTCAT 38338 | |||| | || | |||||| || || || ||||| || || || | ||| Sbjct 173919 ATGACCGAGTAAATGATCTCTAACGGCACCGCCTACTAAATAAACTTGCAT 173869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 386805795896401