Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_025830.1
Length=120938
Score E
Sequences producing significant alignments: (Bits) Value
seq8237 107 1e-18
>seq8237
Length=506431
Score = 107 bits (118), Expect = 1e-18
Identities = 278/411 (68%), Gaps = 17/411 (4%)
Strand=Plus/Minus
Query 37935 CGTAATGGATCTTCAATAAATGCCTGTGATGTATGACGTAATGTTTTAAGTCCTAAGTCA 37994
||||| |||||||| ||| || | ||| ||||||| ||||| | |||| |||
Sbjct 174269 CGTAACGGATCTTCTGCAAAAGCGTCTGAAACGTGACGTAGGATTTTATGCGCTAAATCA 174210
Query 37995 ACCTGACCACCAAAAGGATCTATA-ATTTCACCACTCTCAACATCCATCGCCATGGAATT 38053
| || ||| | ||||||| ||| | || ||| ||| |||||||| |||| |||
Sbjct 174209 TCTTGTCCATGATAAGGATC-ATACACTTGACCTGCTTCA---TCCATCGCAATGGCATT 174154
Query 38054 GATGGTTAGGTCTCTACGTGCCAAATCCTCTTCCAGAGTTACATCTGGA---CTAAAGCA 38110
|||||||| ||| | ||| ||||||||||| | || ||||||||| ||| |
Sbjct 174153 GATGGTTAAGTCACGACGAATTAAATCCTCTTCTAAGGTGACATCTGGATCGGTAA---A 174097
Query 38111 TACCTCAAATCCTTTATGGCCTTCACCTGTTTTTCTTTCTGTGCGTGCAAGAGCGTACTC 38170
| ||||||||| | || || | |||| ||| | || || || || || || || ||
Sbjct 174096 AAACTCAAATCCATGATAACCGTGTCCTGATTTACGCTCAGTACGGGCTAGGGCATATTC 174037
Query 38171 TTCTCTTGTTTCTGGGTGAAGATAAACTGGAAAAGATGCGCCAACTTGTGTGA-ACCCTC 38229
|||| |||||| || || | | | || || ||| | ||||| || ||| | |||
Sbjct 174036 TTCTTTTGTTTTGGGATGTAAAAACACAGGGAAATCTTTCCCAACGGGT-TGATAACCT- 173979
Query 38230 TTTTCAA-CATCTCTTCATGCGTAGCACCAACAACCACATAATCACGGTC-TGATATTTC 38287
| ||| | | || ||||||| |||||||| |||||||| || |||||
Sbjct 173978 TGGGCAAGAAGTTGCTCTGGCGTAGCGCCAACAACAACATAATCCTTTTCGTGATA-GGG 173920
Query 38288 ACGACCTAACAATTTATCTCTTACTGCGCCACCTACCAAGTATACCTTCAT 38338
| |||| | || | |||||| || || || ||||| || || || | |||
Sbjct 173919 ATGACCGAGTAAATGATCTCTAACGGCACCGCCTACTAAATAAACTTGCAT 173869
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 386805795896401
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |