Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq13960 105 6e-18 seq899 102 8e-17 >seq13960 Length=3940437 Score = 105 bits (116), Expect = 6e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| ||| ||||| | |||||||||||||||||| ||| |||||| || ||||| ||| Sbjct 2057898 TACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 2057957 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 || |||||||| || | |||||| ||||||||||||| Sbjct 2057958 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 2057995 >seq899 Length=2520420 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| |||||||| |||| | Sbjct 2265347 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCA 2265406 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | |||||| ||||| || ||||||||||| || || || || | Sbjct 2265407 AAGATCAACCTCTGTTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCACCTTGACA 2265466 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | ||||||||||| || || ||| Sbjct 2265467 TTCTCGATGGTGTCACTTGGCTCCACCTCCAGAGTAATGGTTTTACCAGTGAGGGTCTTT 2265526 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 2265527 ACAAAGATCTGCAT 2265540 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | |||||||| || ||||||||||| || ||| || Sbjct 2264410 CAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 2264469 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| |||||||| |||| | |||| || | ||| || ||||| || ||||| || Sbjct 2264470 CCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTC 2264529 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || || | | || | || || | |||||||| || | || Sbjct 2264530 TTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 2264589 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || |||| || || | ||| |||||||| Sbjct 2264590 GATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| |||||||| |||| | Sbjct 2264663 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCA 2264722 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || ||||| ||||| || || || || | Sbjct 2264723 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACG 2264782 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | || || || |||| || || Sbjct 2264783 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTC 2264842 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 2264843 ACGAAGATCTGCAT 2264856 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| |||||||| |||| | Sbjct 2264891 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCA 2264950 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || ||||| ||||| || || || || | Sbjct 2264951 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACG 2265010 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | || || || |||| || || Sbjct 2265011 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTC 2265070 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 2265071 ACGAAGATCTGCAT 2265084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476521483899240