Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq3109 111 5e-21
seq4752 107 6e-20
seq12753 104 7e-19
seq3424 104 7e-19
seq8667 98.7 3e-17
seq6368 98.7 3e-17
seq899 98.7 3e-17
seq8985 93.3 1e-15
seq12458 91.5 5e-15
seq4902 91.5 5e-15
seq2877 91.5 5e-15
seq7684 89.7 2e-14
seq9822 86.0 2e-13
seq8559 86.0 2e-13
seq13113 84.2 7e-13
seq13385 82.4 2e-12
seq5535 82.4 2e-12
seq1989 80.6 8e-12
seq642 78.8 3e-11
>seq3109
Length=936853
Score = 111 bits (122), Expect = 5e-21
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674210 TGGCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 674269
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 674270 TCCCGGGTTTCGGC 674283
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 663632 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 663573
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 663572 CCGGGTTTCGGC 663561
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 794852 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 794793
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 794792 CCGGGTTTCGGC 794781
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 690374 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 690315
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 690314 CCGGGTTTCGGC 690303
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 712540 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 712481
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 712480 CCGGGTTTCGGC 712469
Score = 93.3 bits (102), Expect = 1e-15
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCA 2825
|||||||| |||||||| |||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 684662 TGGCTGAAATAGCTCAGCTGGGAGAGAATTAGACTGAAGATCTTAAAGATCCCTGGTTCA 684721
Query 2826 ACCCCGGGCTT 2836
||||| || ||
Sbjct 684722 ACCCCAGGTTT 684732
>seq4752
Length=355175
Score = 107 bits (118), Expect = 6e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 160013 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 159954
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 159953 TCCCGGGTTTCGGC 159940
>seq12753
Length=1298660
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 297937 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 297878
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 297877 CCGGGTTTCGGC 297866
>seq3424
Length=220420
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 118669 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 118728
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 118729 CCGGGTTTCGGC 118740
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 124213 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 124272
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 124273 CCGGGTTTCGGC 124284
>seq8667
Length=8950919
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 8850663 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 8850604
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 8850603 CCGGGTTTCGGC 8850592
>seq6368
Length=700291
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 604738 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 604679
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 604678 CCGGGTTTCGGC 604667
>seq899
Length=2520420
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2278102 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2278043
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2278042 CCGGGTTTCGGC 2278031
Score = 93.3 bits (102), Expect = 1e-15
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1529613 TGGCCGAAATAGTTCAGCTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 1529554
Query 2827 CCCCGGGCTTCAGC 2840
|| ||| ||||||
Sbjct 1529553 TCCTGGGTTTCAGC 1529540
>seq8985
Length=4597013
Score = 93.3 bits (102), Expect = 1e-15
Identities = 62/69 (90%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||| ||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 3931021 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGGTCTAAAGGTCCCTGGTTCAATC 3930962
Query 2829 CCGGGCTTC 2837
||||| |||
Sbjct 3930961 CCGGGTTTC 3930953
>seq12458
Length=2991737
Score = 91.5 bits (100), Expect = 5e-15
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| |
Sbjct 692237 GCTGAAGTAGCTCTGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGCCCCTGGTTCAGTC 692178
Query 2829 CCGGGCTT 2836
||||| ||
Sbjct 692177 CCGGGTTT 692170
>seq4902
Length=2341893
Score = 91.5 bits (100), Expect = 5e-15
Identities = 55/58 (95%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 555456 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 555513
Score = 91.5 bits (100), Expect = 5e-15
Identities = 55/58 (95%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 556127 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 556184
Score = 82.4 bits (90), Expect = 2e-12
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||| | |||||||||||||||||||||| ||||||||||| ||||||||||||| | |
Sbjct 552918 GCTGGAAAAGCTCAGTTGGGAGAGCATTAGCCTGAAGATCTAGAGGTCCCTGGTTCGATC 552977
Query 2829 CCGGG 2833
|| ||
Sbjct 552978 CCAGG 552982
Score = 82.4 bits (90), Expect = 2e-12
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830
|||||||||||||||||| |||||||||||||||| ||||||||||||| | |||
Sbjct 556589 TAGCTCAGTTGGGAGAGCTTTAGACTGAAGATCTACAGGTCCCTGGTTCGATCCC 556643
Score = 82.4 bits (90), Expect = 2e-12
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| | |||||||||| ||||||| ||||||||||||||||||| ||||||||||||
Sbjct 566911 GCTGGAATAGCTCAGTTAGGAGAGCGTTAGACTGAAGATCTAAAGCTCCCTGGTTCAA 566968
Score = 78.8 bits (86), Expect = 3e-11
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823
|| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 561266 TAACTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTT 561313
Score = 78.8 bits (86), Expect = 3e-11
Identities = 51/56 (91%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824
|||| | |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 566426 GCTGGAATAGCTCAGCTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 566481
>seq2877
Length=662651
Score = 91.5 bits (100), Expect = 5e-15
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825
||| | ||| |||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 582103 ATGACCGAAATAGCTCAGTTGGGAGAGCCTTAGACTGAAGATCTAGAGGTCCCTGGTTCG 582044
Query 2826 ACCCCGGGCTTCAGC 2840
| || | | ||||||
Sbjct 582043 ATCCTGCGTTTCAGC 582029
>seq7684
Length=4352618
Score = 89.7 bits (98), Expect = 2e-14
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 4139656 TGGCTGAAATAGCTCAACTGTGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 4139597
Query 2827 CCCCGGGCTTCAGC 2840
|| || ||||||
Sbjct 4139596 TTCCAGGTTTCAGC 4139583
>seq9822
Length=6210778
Score = 86.0 bits (94), Expect = 2e-13
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832
|| |||||||||| |||||| ||||||||||||||||||||||| |||||||| ||| |
Sbjct 3257983 AAATAGCTCAGTTAGGAGAGTGTTAGACTGAAGATCTAAAGGTCCTTGGTTCAATCCCAG 3258042
Query 2833 GCTTCAG 2839
| |||||
Sbjct 3258043 GTTTCAG 3258049
>seq8559
Length=4107731
Score = 86.0 bits (94), Expect = 2e-13
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832
|| ||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 1933361 AAATAGCTCATTTGGGAGACTATTAGACTGAAGACCTAAAGGTCCCTGGTTCAATCCCGG 1933302
Query 2833 GCTTC 2837
| |||
Sbjct 1933301 GTTTC 1933297
>seq13113
Length=1280325
Score = 84.2 bits (92), Expect = 7e-13
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825
||||| ||| ||||||| ||||||| |||| ||||||||||||||||||||||||||
Sbjct 109827 ATGGCCGAAATAGCTCAACCGGGAGAGTGTTAGTCTGAAGATCTAAAGGTCCCTGGTTCA 109768
Query 2826 ACCCCGGGCTT 2836
||||| || ||
Sbjct 109767 ACCCCAGGTTT 109757
>seq13385
Length=1527110
Score = 82.4 bits (90), Expect = 2e-12
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 844468 TGGCTGAAATAGCTAAGTTGGGAGAGTGTTAGAGGGAAGATCTAAAGGTCCCTGGTTCGA 844527
Query 2827 CCCCGGGCTT 2836
|| ||| ||
Sbjct 844528 TCCTGGGTTT 844537
>seq5535
Length=684944
Score = 82.4 bits (90), Expect = 2e-12
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||||| |||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 241476 GCTGAAATAGCTCAGTTGGGAGATAATTATGCTGAAGATCTAAAGGTCCCTGGTTCAA 241419
>seq1989
Length=1075892
Score = 80.6 bits (88), Expect = 8e-12
Identities = 56/64 (88%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832
|| |||||||| | ||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 6499 AAATAGCTCAGATTGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTTGATCCCGG 6440
Query 2833 GCTT 2836
| ||
Sbjct 6439 GTTT 6436
>seq642
Length=597836
Score = 78.8 bits (86), Expect = 3e-11
Identities = 58/68 (85%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||| | |||||||||| ||||||| ||||||||||||||||||| |||||||||| |
Sbjct 333758 GCTGGAATAGCTCAGTTAGGAGAGCGCTAGACTGAAGATCTAAAGGCCCCTGGTTCAGTC 333817
Query 2829 CCGGGCTT 2836
| ||| ||
Sbjct 333818 CTGGGTTT 333825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15846989447055
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |