Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq3109 111 5e-21 seq4752 107 6e-20 seq12753 104 7e-19 seq3424 104 7e-19 seq8667 98.7 3e-17 seq6368 98.7 3e-17 seq899 98.7 3e-17 seq8985 93.3 1e-15 seq12458 91.5 5e-15 seq4902 91.5 5e-15 seq2877 91.5 5e-15 seq7684 89.7 2e-14 seq9822 86.0 2e-13 seq8559 86.0 2e-13 seq13113 84.2 7e-13 seq13385 82.4 2e-12 seq5535 82.4 2e-12 seq1989 80.6 8e-12 seq642 78.8 3e-11 >seq3109 Length=936853 Score = 111 bits (122), Expect = 5e-21 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 674210 TGGCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 674269 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 674270 TCCCGGGTTTCGGC 674283 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 663632 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 663573 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 663572 CCGGGTTTCGGC 663561 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 794852 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 794793 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 794792 CCGGGTTTCGGC 794781 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 690374 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 690315 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 690314 CCGGGTTTCGGC 690303 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 712540 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 712481 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 712480 CCGGGTTTCGGC 712469 Score = 93.3 bits (102), Expect = 1e-15 Identities = 64/71 (90%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCA 2825 |||||||| |||||||| |||||||| ||||||||||||||| ||||| ||||||||||| Sbjct 684662 TGGCTGAAATAGCTCAGCTGGGAGAGAATTAGACTGAAGATCTTAAAGATCCCTGGTTCA 684721 Query 2826 ACCCCGGGCTT 2836 ||||| || || Sbjct 684722 ACCCCAGGTTT 684732 >seq4752 Length=355175 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 160013 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 159954 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 159953 TCCCGGGTTTCGGC 159940 >seq12753 Length=1298660 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 297937 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 297878 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 297877 CCGGGTTTCGGC 297866 >seq3424 Length=220420 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 118669 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 118728 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 118729 CCGGGTTTCGGC 118740 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 124213 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 124272 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 124273 CCGGGTTTCGGC 124284 >seq8667 Length=8950919 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 8850663 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 8850604 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 8850603 CCGGGTTTCGGC 8850592 >seq6368 Length=700291 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 604738 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 604679 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 604678 CCGGGTTTCGGC 604667 >seq899 Length=2520420 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2278102 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2278043 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2278042 CCGGGTTTCGGC 2278031 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| ||| |||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1529613 TGGCCGAAATAGTTCAGCTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 1529554 Query 2827 CCCCGGGCTTCAGC 2840 || ||| |||||| Sbjct 1529553 TCCTGGGTTTCAGC 1529540 >seq8985 Length=4597013 Score = 93.3 bits (102), Expect = 1e-15 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| ||||||||||| |||||||||||||||||||| | Sbjct 3931021 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGGTCTAAAGGTCCCTGGTTCAATC 3930962 Query 2829 CCGGGCTTC 2837 ||||| ||| Sbjct 3930961 CCGGGTTTC 3930953 >seq12458 Length=2991737 Score = 91.5 bits (100), Expect = 5e-15 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| | Sbjct 692237 GCTGAAGTAGCTCTGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGCCCCTGGTTCAGTC 692178 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 692177 CCGGGTTT 692170 >seq4902 Length=2341893 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 555456 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 555513 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 556127 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 556184 Score = 82.4 bits (90), Expect = 2e-12 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| | |||||||||||||||||||||| ||||||||||| ||||||||||||| | | Sbjct 552918 GCTGGAAAAGCTCAGTTGGGAGAGCATTAGCCTGAAGATCTAGAGGTCCCTGGTTCGATC 552977 Query 2829 CCGGG 2833 || || Sbjct 552978 CCAGG 552982 Score = 82.4 bits (90), Expect = 2e-12 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 |||||||||||||||||| |||||||||||||||| ||||||||||||| | ||| Sbjct 556589 TAGCTCAGTTGGGAGAGCTTTAGACTGAAGATCTACAGGTCCCTGGTTCGATCCC 556643 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| | |||||||||| ||||||| ||||||||||||||||||| |||||||||||| Sbjct 566911 GCTGGAATAGCTCAGTTAGGAGAGCGTTAGACTGAAGATCTAAAGCTCCCTGGTTCAA 566968 Score = 78.8 bits (86), Expect = 3e-11 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 || ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 561266 TAACTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTT 561313 Score = 78.8 bits (86), Expect = 3e-11 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 |||| | |||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 566426 GCTGGAATAGCTCAGCTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 566481 >seq2877 Length=662651 Score = 91.5 bits (100), Expect = 5e-15 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||| | ||| |||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 582103 ATGACCGAAATAGCTCAGTTGGGAGAGCCTTAGACTGAAGATCTAGAGGTCCCTGGTTCG 582044 Query 2826 ACCCCGGGCTTCAGC 2840 | || | | |||||| Sbjct 582043 ATCCTGCGTTTCAGC 582029 >seq7684 Length=4352618 Score = 89.7 bits (98), Expect = 2e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| ||||||| || ||||| |||||||||||||||||||||||||||||||| Sbjct 4139656 TGGCTGAAATAGCTCAACTGTGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 4139597 Query 2827 CCCCGGGCTTCAGC 2840 || || |||||| Sbjct 4139596 TTCCAGGTTTCAGC 4139583 >seq9822 Length=6210778 Score = 86.0 bits (94), Expect = 2e-13 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||| |||||| ||||||||||||||||||||||| |||||||| ||| | Sbjct 3257983 AAATAGCTCAGTTAGGAGAGTGTTAGACTGAAGATCTAAAGGTCCTTGGTTCAATCCCAG 3258042 Query 2833 GCTTCAG 2839 | ||||| Sbjct 3258043 GTTTCAG 3258049 >seq8559 Length=4107731 Score = 86.0 bits (94), Expect = 2e-13 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || ||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||| Sbjct 1933361 AAATAGCTCATTTGGGAGACTATTAGACTGAAGACCTAAAGGTCCCTGGTTCAATCCCGG 1933302 Query 2833 GCTTC 2837 | ||| Sbjct 1933301 GTTTC 1933297 >seq13113 Length=1280325 Score = 84.2 bits (92), Expect = 7e-13 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||||| ||| ||||||| ||||||| |||| |||||||||||||||||||||||||| Sbjct 109827 ATGGCCGAAATAGCTCAACCGGGAGAGTGTTAGTCTGAAGATCTAAAGGTCCCTGGTTCA 109768 Query 2826 ACCCCGGGCTT 2836 ||||| || || Sbjct 109767 ACCCCAGGTTT 109757 >seq13385 Length=1527110 Score = 82.4 bits (90), Expect = 2e-12 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| | Sbjct 844468 TGGCTGAAATAGCTAAGTTGGGAGAGTGTTAGAGGGAAGATCTAAAGGTCCCTGGTTCGA 844527 Query 2827 CCCCGGGCTT 2836 || ||| || Sbjct 844528 TCCTGGGTTT 844537 >seq5535 Length=684944 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 241476 GCTGAAATAGCTCAGTTGGGAGATAATTATGCTGAAGATCTAAAGGTCCCTGGTTCAA 241419 >seq1989 Length=1075892 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||| | ||||||| ||||||||||||||||||||||||||||| | ||||| Sbjct 6499 AAATAGCTCAGATTGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTTGATCCCGG 6440 Query 2833 GCTT 2836 | || Sbjct 6439 GTTT 6436 >seq642 Length=597836 Score = 78.8 bits (86), Expect = 3e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| | |||||||||| ||||||| ||||||||||||||||||| |||||||||| | Sbjct 333758 GCTGGAATAGCTCAGTTAGGAGAGCGCTAGACTGAAGATCTAAAGGCCCCTGGTTCAGTC 333817 Query 2829 CCGGGCTT 2836 | ||| || Sbjct 333818 CTGGGTTT 333825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15846989447055