Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_026584.1 Length=109871 Score E Sequences producing significant alignments: (Bits) Value seq11347 116 3e-21 seq858 100 2e-16 seq9968 98.7 7e-16 seq9376 93.3 3e-14 seq9425 89.7 4e-13 >seq11347 Length=47098 Score = 116 bits (128), Expect = 3e-21 Identities = 206/296 (70%), Gaps = 16/296 (5%) Strand=Plus/Minus Query 97855 CGGCGTGGCGCACGCCGGCTTCCTG--CATCTGCCGGTACCGGTCATCCATCTC---CAC 97909 || ||| |||||||||| || || |||| |||| || ||||| |||||||| ||| Sbjct 24862 CGACGTTGCGCACGCCGA--TCTTGGACATCCGCCGATAGCGGTCCTCCATCTCGCGCAC 24805 Query 97910 GGTGAGCCACCGCAGCGTCTTAACCGCCTCGTCGGGCTCGGTGACCACCGGCTGCAAAAG 97969 || ||| ||||| | |||| | || |||||||||||||| || || Sbjct 24804 CGT---CCATTTCAGCGCGACGATGGCCTTCTTCGGATCGGTGACCACCGGGGCCAGCAG 24748 Query 97970 GTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGCTT 98029 ||| ||||| |||| || | || |||| |||||| |||||||||||||||| | Sbjct 24747 GTGCGGGATGCCGTCATAGACCGACAGCTCCAGCATCTTGGGGTCGATCATGATGAACCG 24688 Query 98030 GACCCGATCAGGATTGGCT---CGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCT 98086 | | | | || ||| |||||||| || || | | ||| | ||||| | | Sbjct 24687 GCACTGGTGCGG---GGCCAGGCGGTAGAGGATCGACAGGATCATGGCGTTGACGCCGAC 24631 Query 98087 GGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTTGGCCAGGT 98142 ||||||||||| ||||||| ||| || | || ||||||||||| |||||||||| Sbjct 24630 CGACTTGCCCGAGCCGGTGGTGCCGGCGATCAAGAGGTGGGGCATCTTGGCCAGGT 24575 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/177 (71%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 97664 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 97723 ||||| ||||| ||| |||| || || || ||||||||||| || |||| || || Sbjct 25164 GTTGGCCTTGATGGTGCCGGTGATGACGTCGACCGAGGGCCGCTGGGTGGCCATGATCAG 25105 Query 97724 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 97783 || || ||||| ||||| ||| ||||||| | ||| | | | |||||| || Sbjct 25104 GTGGATGCCGGCGGCGCGGGCCATCTGGGCCAGGCGCTGCACGGCGCCCTCGATGTC--- 25048 Query 97784 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGG 97840 |||| | || ||||||| ||||| || | ||||||| || ||||| | ||||| Sbjct 25047 CTTGCCGGCGACCATCATCAGGTCGGCCACCTCGTCGATGACCACCACCAGATAGGG 24991 >seq858 Length=60328 Score = 100 bits (110), Expect = 2e-16 Identities = 131/179 (73%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 97658 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97717 ||||| ||| | ||||| | ||| |||| || || || ||||| ||||| ||||| || Sbjct 50397 CGGCAGGTTCGCCTTGATGACGCCGGTGATGACGTCGACCGAGGGACGCTGGGTCGCGAG 50338 Query 97718 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97777 || | || || ||||| || ||||||||||| || | || || | |||||| Sbjct 50337 GATCAAGTGGATGCCGGCAGCACGCGCCTTCTGCGCCAGACGCTGGATCAGGAACTCGAC 50278 Query 97778 TTCTTTCTTGTAGCCGCC--CATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 97834 ||| |||| ||||| |||||||||||| || || ||||||||||| |||||||| Sbjct 50277 TTC---CTTG--CCCGCCGTCATCATGAGGTCGGCCAGCTCGTCGACCACCACCACGAT 50224 >seq9968 Length=31652 Score = 98.7 bits (108), Expect = 7e-16 Identities = 127/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 97664 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 97723 ||||| ||||| ||||| |||| || |||||| ||| ||||| || ||||||| || Sbjct 27731 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGCTGGGTGGCCAGGATCAG 27672 Query 97724 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 97783 || || ||||| ||||| ||||||||||| | ||| | || |||||| || || Sbjct 27671 GTGGATGCCGGCCGCGCGGGCCTTCTGGGCCAGGCGCGCGATCAGCTCCTCGA--TC-TT 27615 Query 97784 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGT 97836 |||| | | ||||||| ||||| || || ||||||| || | ||||||| Sbjct 27614 CTTGCCGACCACCATCATCAGGTCGGCCAGCTCGTCGATGACGATGACGATGT 27562 >seq9376 Length=532321 Score = 93.3 bits (102), Expect = 3e-14 Identities = 182/266 (68%), Gaps = 10/266 (4%) Strand=Plus/Plus Query 97880 CATCTGCCGGTACCGGTCATCCATCTC---CACGGTGAGCCACCGCAGCGTCTTAACCGC 97936 ||||| || || ||||| ||||| || ||||| ||| || || | | ||||| Sbjct 135370 CATCTTGCGATAACGGTCTTCCATTTCGCGCACGGC---CCATTTCAACGCCATGACCGC 135426 Query 97937 CTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAG 97996 || | || ||||| || |||||| ||| || || || || |||| || | || Sbjct 135427 CTTTTTCGGATCGGTAACAACCGGCGTCAACAGATGCGGAATGCCGTCATAAACCGACAG 135486 Query 97997 TTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAG 98056 ||| | ||| ||||| |||| |||||| || | || || || |||||||| Sbjct 135487 TTCGAGCATTTTCGGATCGACCATGATCAGGCGGCATTCTTCCGGCTTCAGACGGTAGAG 135546 Query 98057 CATGGAAACCAGCATCGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTGGCGCCAGCC 98114 || || | | ||| | ||||||| || | ||||||||||| ||||||| ||| || Sbjct 135547 CAGCGACAGGATCATGGTGTTGATGGCAACC--GACTTGCCCGAACCGGTGGTGCCGGCG 135604 Query 98115 ACCAGCAGGTGGGGCATTTTGGCCAG 98140 |||||||| || ||||| || ||||| Sbjct 135605 ACCAGCAGATGCGGCATCTTCGCCAG 135630 >seq9425 Length=520298 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/183 (71%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 97658 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97717 ||| | ||||| ||||| ||| |||| || || || || || ||||||||||||| Sbjct 178367 CGGGAAGTTGGCCTTGATCGTGCCGGTGATGACGTCGACCGACGGGCGCTGCGTCGCCAT 178426 Query 97718 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97777 || || || || ||||| ||||||||| ||||||||| ||| | | | |||||| Sbjct 178427 GATGACGTGGATGCCGGCCGCGCGCGCCATCTGGGCGAGGCGCTGGACGGCGCCCTCGAT 178486 Query 97778 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTA 97837 || |||| | | ||||||| ||||| || | ||||||| | || |||||||| Sbjct 178487 ATC---CTTGCCGGCCACCATCATCAGGTCGGCCATCTCGTCGATGATGACGACGATGTA 178543 Query 97838 GGG 97840 || Sbjct 178544 AGG 178546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351397895556568