Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_026588.1
Length=60285
Score E
Sequences producing significant alignments: (Bits) Value
seq12569 280 6e-71
seq6089 226 1e-54
seq11405 125 3e-24
>seq12569
Length=80069
Score = 280 bits (310), Expect = 6e-71
Identities = 566/833 (68%), Gaps = 29/833 (3%)
Strand=Plus/Minus
Query 45029 CAAGTTCAACGACCTCATCCAAAGCTTGCACCGGATCCAGCGGTTCGGCCAAACCCACCC 45088
||| ||||||||| ||||||| | ||||| |||||||| ||| || || ||
Sbjct 63014 CAAATTCAACGACTTCATCCAGGCGATCCACCGCATCCAGCGATTCCTGCAGGGGCATCC 62955
Query 45089 CTGCACAGCCCATTTGATCCACTCCGAAACCGAACGGGAAGTGGTGCGGGTCATCCGCGA 45148
| | ||| ||||| || |||| | ||| || | ||| ||||| | | | ||
Sbjct 62954 CGTCGAGATCCACGTGATCTACGCCGAGAGCGAGCGCGCCGTGCTGCGGACCCTGCTGGA 62895
Query 45149 GAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCACCATCATCCACGAGTATGG 45208
||| ||||| || ||| || || | || |||| | | ||||||| ||| || ||
Sbjct 62894 GAAGTGGGCGCAGCACGAGGAAATGGCGAAGACCATGAGCGCGATCATCCGCGAATACGG 62835
Query 45209 ACTTGACCCCGAGGCAATTTCGGAAGCGCTGCAACGCTCCATCGG-GTGC--GAACGCAT 45265
|| | || | || || | | ||| ||| |||| || ||| || || ||
Sbjct 62834 CCTGTCCAACGCCGACATGGCGAAGGTGCTCACCCGCGCCATGGGCGTGAAGGATCGGAT 62775
Query 45266 CGAAGCCTCCGGCGAGGGCTGGCTGTTCGCCAACAACGACTGCGTACCCGAAAC-CAACA 45324
||| | ||||||| || | || | ||| | ||| ||| |||||| | ||
Sbjct 62774 CGAGGTGACCGGCGACAACTATCGCTTGGTGAACGAAGACACCGTCGTCGAAACGCGACG 62715
Query 45325 GCATG---GCAGACAATTCGGTGGACCTGATCGTCACCAGCATTCCGTTCTCCAACCACT 45381
| ||| || |||| |||| ||||||||||||| || |||||||| | || |
Sbjct 62714 G-ATGCCGGCGGACAGC---GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGT 62659
Query 45382 ACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTTCTGGG 45441
||||||| |||||| |||| ||| ||||| ||||||||||||||||| |||||||||
Sbjct 62658 ACGAGTATTCGCCGAACTACGCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGC 62599
Query 45442 CGCAGATGGACTACCTCACGCCGCAACTGCTGCGCATCCTCGCGCCCGGGCGGATCTACG 45501
|||||||||| ||| | ||| | ||||||||| | |||||||| || ||| | ||
Sbjct 62598 GACAGATGGACTTTCTCGCCCCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCG 62539
Query 45502 CCTGCCATGTCAAGGACCGCATCTTGTTCGGCAACGTCACCGGCGCAGGCGTTCCCACCG 45561
|| ||| || |||||||| ||| || || | |||||| ||| ||| ||||
Sbjct 62538 CCATCCACGTGAAGGACCGGATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCG 62479
Query 45562 TCTCCCCGTTCCACGCCGA------GGCGATCTTCCACGGCCGCAAACACGGCTTCGACT 45615
||| ||||||| | ||| |||| ||| |||||| |||||||| ||
Sbjct 62478 TCTACCCGTTCGCGGACGACTGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCCT 62425
Query 45616 ACCTCGGC---ATGATCATCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACC 45672
|||||||| | || || | || ||||| || || || || ||||||||||| || |
Sbjct 62424 ACCTCGGCGAAAAGACCAACCTG---ACCGACGTCGTCCGCGAGAACAACCAGACCTATC 62368
Query 45673 GGCTGGGCTGGTCCGAGCAGTGCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAAT 45732
||||||||||| |||||||||||| |||| | ||||||| ||| ||||||
Sbjct 62367 GGCTGGGCTGGAGCGAGCAGTGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAA 62308
Query 45733 ACGTTCTGTTGTTCCACAAACCGCAGACAGACAGGTCGAAGGGATACGCCGACACCCCCG 45792
| || ||| |||||| ||| |||| | ||| ||| || || ||||||||| || |
Sbjct 62307 AGGTGCTGCTGTTCCGCAAGCCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGG 62248
Query 45793 TCACCAAATCCAAGGACGACTACACCCGTGCCCGATGGCAGGTGGACGCGCAC 45845
| | || |||||| ||||| ||| || || |||||| | |||||||||
Sbjct 62247 TGTCGAAGGACAAGGATCGCTACAGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195
Score = 196 bits (216), Expect = 2e-45
Identities = 446/662 (67%), Gaps = 13/662 (2%)
Strand=Plus/Minus
Query 43956 CACCAGCGTGACCTGGTGCGTTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCG 44015
|| ||||| | | |||| | ||||||||| || ||| || | ||||| ||
Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGCCGCCCTGTTCGCCGCC 64013
Query 44016 TTCGGATTGGGCAAGACGGTGATGCAGTTGGAGATCGTGCGCCTGTCCCTGGCGAAGCAC 44075
||||| |||| || | || | ||||||||||| ||||| || |||| | |
Sbjct 64012 TTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGAT--TGCGCGGATCATGCGCGA-GATC 63956
Query 44076 GGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGAC 44135
|||||| | || |||||||| || ||||| || |||||| |||||| | |||
Sbjct 63955 TCCGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCGGGAC 63896
Query 44136 GCCAACATGCTGGGCATTGAAACCCGGTTCGTTCGCCGCACAGAAGAAGTCGGCGG---C 44192
||| |||||||||| || ||||||| |||| || | || || | | || |
Sbjct 63895 GCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGATCCC 63836
Query 44193 GACGGTATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACACTG 44252
| || |||| || |||||||| |||| || || ||||| ||| | ||||| | |||
Sbjct 63835 GGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC-CTG 63777
Query 44253 TT-CACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGG---TCCAAGAC 44308
|| | ||| || || || |||||||| ||||| ||||| ||||| ||||||||
Sbjct 63776 TTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCAAGAC 63717
Query 44309 CTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCCACCGCCAC 44368
|| | |||| | ||||||||| ||| |||| || | ||||||||| |||||
Sbjct 63716 CTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGGCCAC 63657
Query 44369 ACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGATGGA 44428
|| ||||| ||| | || |||||| || ||| ||| | || || ||||||||
Sbjct 63656 GCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGATGGA 63597
Query 44429 CACCGGTGCGGCGCTCACGCGTTGGTTCCAACGGGACTCCACGAAGGCGAACAACCTCAC 44488
||| ||| || || | |||| || ||| | | | || || ||||||
Sbjct 63596 TGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGACGCCCTCAC 63537
Query 44489 CCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAAC-ACCTGGGCGGCGTTCG 44547
||| ||||||| ||||| | |||||||||||||||| || | | ||||| |||||
Sbjct 63536 CCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGG-TGCGCAAGCTGGGGTCTGTTCG 63478
Query 44548 TGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTACGACCTGCCGCCGCTGGAGG 44607
| || ||| || ||||| | || | |||||||||||||||||| ||| |||
Sbjct 63477 TCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCCCCTGCAGG 63418
Query 44608 TG 44609
||
Sbjct 63417 TG 63416
Score = 91.5 bits (100), Expect = 6e-14
Identities = 157/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 47121 TGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGAG 47180
|||||| ||| ||||| ||||| ||||||||||||| | | || | || |||||
Sbjct 61909 TGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCGAGCCGGGCGAC 61850
Query 47181 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCACTGAAACTTGGT 47240
|||||||||| ||||||||||| ||| |||||||| | || || | || | ||
Sbjct 61849 GTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCATCAAGCACGGG 61790
Query 47241 CGGCGCGGCCGTGGTGTCGAGTTGAATCCCGGCTACTACTTCGATGCTGTCAAGTATCTG 47300
|| |||| | | |||| |||| || | ||||| |||| | ||| ||| | |
Sbjct 61789 CGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTGTGAAGCACGTC 61730
Query 47301 CAAGCCGAGGAGCGCCAG--CGCGACATGCCGAGCCTGTTCGACCT 47344
| ||| || |||| || ||||| ||||| ||| ||||||||
Sbjct 61729 GAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686
>seq6089
Length=13452
Score = 226 bits (250), Expect = 1e-54
Identities = 492/728 (68%), Gaps = 30/728 (4%)
Strand=Plus/Minus
Query 43920 GTCGGCCCCGATGATGTTCACCCGATGCTGCTGCCGCACCAGCGTGACCTGGTGCGTTGG 43979
|||| | || |||| || || ||||| ||| | |||||| || ||||| || |||
Sbjct 4809 GTCGCCGCCAATGACGTGCATCCGATCCTGAAGGGCCACCAGGCCGAGCTGGTCCGGTGG 4750
Query 43980 GCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCGTTCGGATTGGGCAAGACGGTGATG 44039
|| |||| || ||||| || ||||||||||| |||||||| |||||||| |||| |||
Sbjct 4749 GCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCGTTCGGCCTGGGCAAGTCGGTCATG 4690
Query 44040 CAGTTGGAGATCGTGCGCCTGTCCCTGGCGA--AGCACGGCGGCGGTAAAGGTCTGATCG 44097
||| |||||||| |||||| | | ||||| ||| |||||| | | |||||||
Sbjct 4689 CAGCTGGAGATCATGCGCCAG--CTTGGCGCCCAGCTGGGCGGCCGGCAG---CTGATCG 4635
Query 44098 TGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGACGCCAACATGCTGGGCATTGAAA 44157
| |||||||| |||| |||||| ||| | |||||| ||||||||| | ||
Sbjct 4634 TCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCGACGCGCTGATGCTGGGCCTGGATC 4575
Query 44158 CCCGGTTCGTTCGCCGCACAGA--AGAAGTCG------GCGG------CGAC--GGTATC 44201
| ||| | ||| | || | ||| ||| |||| ||| || | |
Sbjct 4574 CGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGCATGCGGATCGGCCGAGCGGGCAGC 4515
Query 44202 TAT--CTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACACTGTTCACGG 44259
| | || ||||||||||| ||||||||| || ||| | |||| ||| | |||| |
Sbjct 4514 TGTACCTGACCAACTATGAATCTGTCCGCGAAGGCAAGATCGACCTGACGCATTTCAATG 4455
Query 44260 CCGTCTCACTCGACGAGGCGAGCGTGC-TGCGCTCGTT---CGGGTCCAAGACCTACCAG 44315
||| || || ||||| || | ||||| ||||| || ||| ||||||||| ||
Sbjct 4454 CCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGTTTTGGCGGCACCAAGACCTTCCGC 4396
Query 44316 TCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCCACCGCCACACCCTCG 44375
|||| | |||||||||||| ||| || || |||||||| ||||| || |||
Sbjct 4395 GAGTTCATGCGGCTGTTCGACGGCATGCAATATAAGTTTGTCGCCACGGCCACGCCGTCG 4336
Query 44376 CCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGATGGACACCGGT 44435
|||||| || | |||||| | ||| || | || || | | | ||||| |||
Sbjct 4335 CCGAACGACTATATCGAGCTGCTGGCCTATGCCGCCTTCCTGGAGATCATGGATGTCGGC 4276
Query 44436 GCGGCGCTCACGCGTTGGTTCCAACGGGACTCCACGAAGGCGAACAACCTCACCCTCTAC 44495
||| || || | ||| | ||| || | |||||| || | || ||| || |
Sbjct 4275 CAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGAGAAGGCCGACGAACTGACCATCCAT 4216
Query 44496 CCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAACACCTGGGCGGCGTTCGTGCAATCC 44555
||||| || ||| | || |||||||||||| |||| | |||||| || ||||| ||
Sbjct 4215 CCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAATAGCTGGGCCGCATTCGTCCAGCGG 4156
Query 44556 CCGGCAGACCTCGGTCACGACGCCACCGGCTACGACCTGCCGCCGCTGGAGGTGTTGTGG 44615
||| || || ||| || | ||||| |||||||| |||||| ||| |||
Sbjct 4155 CCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGACCTGCCCGAGCTGGACGTGCGCTGG 4096
Query 44616 CATGAGGT 44623
||||||||
Sbjct 4095 CATGAGGT 4088
Score = 172 bits (190), Expect = 2e-38
Identities = 316/459 (69%), Gaps = 12/459 (3%)
Strand=Plus/Minus
Query 45347 CCTGATCGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGA 45406
|||||| ||||||||| | || || || ||| || || || |||||||||| || ||
Sbjct 3376 CCTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGA 3317
Query 45407 CTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCA 45466
|||||||| |||||||| || ||||||| |||||||||||||| || ||||| |
Sbjct 3316 TTTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGA 3257
Query 45467 ACTGCTGCGCATCCTCGCGCCCGGGCGGATCTACGCCTGCCATGTCAAGGACCGCATCTT 45526
||||||||| || | ||| || ||| | || ||||| ||||| ||| ||
Sbjct 3256 GCTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGC--GTT 3199
Query 45527 GTTC-----GGCAACGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGC-CGA 45580
|||| |||| | || || ||| | | ||| || |||||||| || ||
Sbjct 3198 GTTCCGTCGGGCA---TGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGC 3142
Query 45581 GGCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCATCGTGGTCAC 45640
|| ||| || ||| || ||||||| ||| || |||||| | | | |||||
Sbjct 3141 TGC-ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCAC 3083
Query 45641 CGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGA 45700
|||||| || || || || || || |||||||||||| ||||||||||||| ||
Sbjct 3082 CGATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGA 3023
Query 45701 CGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGTTGTTCCACAAACCGCAGAC 45760
|||| | |||||||| ||| || ||||| | || |||||| ||| |||| |||
Sbjct 3022 TGCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGAC 2963
Query 45761 AGACAGGTCGAAGGGATACGCCGACACCCCCGTCACCAA 45799
||| || || || || ||||| || ||||||||
Sbjct 2962 CGACCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924
>seq11405
Length=110570
Score = 125 bits (138), Expect = 3e-24
Identities = 101/122 (83%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 48932 GACTGGGTGATCGTGGGCGGCGAATCCGGCCCCGGCGCGCGGCCGATGCACCCCGACTGG 48991
|||||||||||||| |||||||| ||||||||| ||||| || ||||| |||||||||
Sbjct 75391 GACTGGGTGATCGTCGGCGGCGAGAGCGGCCCCGGTGCGCGTCCCATGCATCCCGACTGG 75332
Query 48992 GCGCGCAGCCTGCGCGACCAATGCCAGGCGGCCGGTGTGCCGTTCCTGTTCAAACAGTGG 49051
|||| ||||||||||||||| ||| |||| | || | | ||| ||||||| ||||||
Sbjct 75331 GCGCTCAGCCTGCGCGACCAGTGCGAGGCCGTGGGCACGGCCTTCATGTTCAAGCAGTGG 75272
Query 49052 GG 49053
||
Sbjct 75271 GG 75270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 192755924136226
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