Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_026588.1 Length=60285 Score E Sequences producing significant alignments: (Bits) Value seq12569 280 6e-71 seq6089 226 1e-54 seq11405 125 3e-24 >seq12569 Length=80069 Score = 280 bits (310), Expect = 6e-71 Identities = 566/833 (68%), Gaps = 29/833 (3%) Strand=Plus/Minus Query 45029 CAAGTTCAACGACCTCATCCAAAGCTTGCACCGGATCCAGCGGTTCGGCCAAACCCACCC 45088 ||| ||||||||| ||||||| | ||||| |||||||| ||| || || || Sbjct 63014 CAAATTCAACGACTTCATCCAGGCGATCCACCGCATCCAGCGATTCCTGCAGGGGCATCC 62955 Query 45089 CTGCACAGCCCATTTGATCCACTCCGAAACCGAACGGGAAGTGGTGCGGGTCATCCGCGA 45148 | | ||| ||||| || |||| | ||| || | ||| ||||| | | | || Sbjct 62954 CGTCGAGATCCACGTGATCTACGCCGAGAGCGAGCGCGCCGTGCTGCGGACCCTGCTGGA 62895 Query 45149 GAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCACCATCATCCACGAGTATGG 45208 ||| ||||| || ||| || || | || |||| | | ||||||| ||| || || Sbjct 62894 GAAGTGGGCGCAGCACGAGGAAATGGCGAAGACCATGAGCGCGATCATCCGCGAATACGG 62835 Query 45209 ACTTGACCCCGAGGCAATTTCGGAAGCGCTGCAACGCTCCATCGG-GTGC--GAACGCAT 45265 || | || | || || | | ||| ||| |||| || ||| || || || Sbjct 62834 CCTGTCCAACGCCGACATGGCGAAGGTGCTCACCCGCGCCATGGGCGTGAAGGATCGGAT 62775 Query 45266 CGAAGCCTCCGGCGAGGGCTGGCTGTTCGCCAACAACGACTGCGTACCCGAAAC-CAACA 45324 ||| | ||||||| || | || | ||| | ||| ||| |||||| | || Sbjct 62774 CGAGGTGACCGGCGACAACTATCGCTTGGTGAACGAAGACACCGTCGTCGAAACGCGACG 62715 Query 45325 GCATG---GCAGACAATTCGGTGGACCTGATCGTCACCAGCATTCCGTTCTCCAACCACT 45381 | ||| || |||| |||| ||||||||||||| || |||||||| | || | Sbjct 62714 G-ATGCCGGCGGACAGC---GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGT 62659 Query 45382 ACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTTCTGGG 45441 ||||||| |||||| |||| ||| ||||| ||||||||||||||||| ||||||||| Sbjct 62658 ACGAGTATTCGCCGAACTACGCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGC 62599 Query 45442 CGCAGATGGACTACCTCACGCCGCAACTGCTGCGCATCCTCGCGCCCGGGCGGATCTACG 45501 |||||||||| ||| | ||| | ||||||||| | |||||||| || ||| | || Sbjct 62598 GACAGATGGACTTTCTCGCCCCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCG 62539 Query 45502 CCTGCCATGTCAAGGACCGCATCTTGTTCGGCAACGTCACCGGCGCAGGCGTTCCCACCG 45561 || ||| || |||||||| ||| || || | |||||| ||| ||| |||| Sbjct 62538 CCATCCACGTGAAGGACCGGATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCG 62479 Query 45562 TCTCCCCGTTCCACGCCGA------GGCGATCTTCCACGGCCGCAAACACGGCTTCGACT 45615 ||| ||||||| | ||| |||| ||| |||||| |||||||| || Sbjct 62478 TCTACCCGTTCGCGGACGACTGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCCT 62425 Query 45616 ACCTCGGC---ATGATCATCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACC 45672 |||||||| | || || | || ||||| || || || || ||||||||||| || | Sbjct 62424 ACCTCGGCGAAAAGACCAACCTG---ACCGACGTCGTCCGCGAGAACAACCAGACCTATC 62368 Query 45673 GGCTGGGCTGGTCCGAGCAGTGCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAAT 45732 ||||||||||| |||||||||||| |||| | ||||||| ||| |||||| Sbjct 62367 GGCTGGGCTGGAGCGAGCAGTGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAA 62308 Query 45733 ACGTTCTGTTGTTCCACAAACCGCAGACAGACAGGTCGAAGGGATACGCCGACACCCCCG 45792 | || ||| |||||| ||| |||| | ||| ||| || || ||||||||| || | Sbjct 62307 AGGTGCTGCTGTTCCGCAAGCCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGG 62248 Query 45793 TCACCAAATCCAAGGACGACTACACCCGTGCCCGATGGCAGGTGGACGCGCAC 45845 | | || |||||| ||||| ||| || || |||||| | ||||||||| Sbjct 62247 TGTCGAAGGACAAGGATCGCTACAGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195 Score = 196 bits (216), Expect = 2e-45 Identities = 446/662 (67%), Gaps = 13/662 (2%) Strand=Plus/Minus Query 43956 CACCAGCGTGACCTGGTGCGTTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCG 44015 || ||||| | | |||| | ||||||||| || ||| || | ||||| || Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGCCGCCCTGTTCGCCGCC 64013 Query 44016 TTCGGATTGGGCAAGACGGTGATGCAGTTGGAGATCGTGCGCCTGTCCCTGGCGAAGCAC 44075 ||||| |||| || | || | ||||||||||| ||||| || |||| | | Sbjct 64012 TTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGAT--TGCGCGGATCATGCGCGA-GATC 63956 Query 44076 GGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGAC 44135 |||||| | || |||||||| || ||||| || |||||| |||||| | ||| Sbjct 63955 TCCGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCGGGAC 63896 Query 44136 GCCAACATGCTGGGCATTGAAACCCGGTTCGTTCGCCGCACAGAAGAAGTCGGCGG---C 44192 ||| |||||||||| || ||||||| |||| || | || || | | || | Sbjct 63895 GCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGATCCC 63836 Query 44193 GACGGTATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACACTG 44252 | || |||| || |||||||| |||| || || ||||| ||| | ||||| | ||| Sbjct 63835 GGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC-CTG 63777 Query 44253 TT-CACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGG---TCCAAGAC 44308 || | ||| || || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 63776 TTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCAAGAC 63717 Query 44309 CTACCAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCCACCGCCAC 44368 || | |||| | ||||||||| ||| |||| || | ||||||||| ||||| Sbjct 63716 CTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGGCCAC 63657 Query 44369 ACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGATGGA 44428 || ||||| ||| | || |||||| || ||| ||| | || || |||||||| Sbjct 63656 GCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGATGGA 63597 Query 44429 CACCGGTGCGGCGCTCACGCGTTGGTTCCAACGGGACTCCACGAAGGCGAACAACCTCAC 44488 ||| ||| || || | |||| || ||| | | | || || |||||| Sbjct 63596 TGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGACGCCCTCAC 63537 Query 44489 CCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAAC-ACCTGGGCGGCGTTCG 44547 ||| ||||||| ||||| | |||||||||||||||| || | | ||||| ||||| Sbjct 63536 CCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGG-TGCGCAAGCTGGGGTCTGTTCG 63478 Query 44548 TGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTACGACCTGCCGCCGCTGGAGG 44607 | || ||| || ||||| | || | |||||||||||||||||| ||| ||| Sbjct 63477 TCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCCCCTGCAGG 63418 Query 44608 TG 44609 || Sbjct 63417 TG 63416 Score = 91.5 bits (100), Expect = 6e-14 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 47121 TGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGAG 47180 |||||| ||| ||||| ||||| ||||||||||||| | | || | || ||||| Sbjct 61909 TGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCGAGCCGGGCGAC 61850 Query 47181 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCACTGAAACTTGGT 47240 |||||||||| ||||||||||| ||| |||||||| | || || | || | || Sbjct 61849 GTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCATCAAGCACGGG 61790 Query 47241 CGGCGCGGCCGTGGTGTCGAGTTGAATCCCGGCTACTACTTCGATGCTGTCAAGTATCTG 47300 || |||| | | |||| |||| || | ||||| |||| | ||| ||| | | Sbjct 61789 CGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTGTGAAGCACGTC 61730 Query 47301 CAAGCCGAGGAGCGCCAG--CGCGACATGCCGAGCCTGTTCGACCT 47344 | ||| || |||| || ||||| ||||| ||| |||||||| Sbjct 61729 GAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686 >seq6089 Length=13452 Score = 226 bits (250), Expect = 1e-54 Identities = 492/728 (68%), Gaps = 30/728 (4%) Strand=Plus/Minus Query 43920 GTCGGCCCCGATGATGTTCACCCGATGCTGCTGCCGCACCAGCGTGACCTGGTGCGTTGG 43979 |||| | || |||| || || ||||| ||| | |||||| || ||||| || ||| Sbjct 4809 GTCGCCGCCAATGACGTGCATCCGATCCTGAAGGGCCACCAGGCCGAGCTGGTCCGGTGG 4750 Query 43980 GCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCGTTCGGATTGGGCAAGACGGTGATG 44039 || |||| || ||||| || ||||||||||| |||||||| |||||||| |||| ||| Sbjct 4749 GCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCGTTCGGCCTGGGCAAGTCGGTCATG 4690 Query 44040 CAGTTGGAGATCGTGCGCCTGTCCCTGGCGA--AGCACGGCGGCGGTAAAGGTCTGATCG 44097 ||| |||||||| |||||| | | ||||| ||| |||||| | | ||||||| Sbjct 4689 CAGCTGGAGATCATGCGCCAG--CTTGGCGCCCAGCTGGGCGGCCGGCAG---CTGATCG 4635 Query 44098 TGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGACGCCAACATGCTGGGCATTGAAA 44157 | |||||||| |||| |||||| ||| | |||||| ||||||||| | || Sbjct 4634 TCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCGACGCGCTGATGCTGGGCCTGGATC 4575 Query 44158 CCCGGTTCGTTCGCCGCACAGA--AGAAGTCG------GCGG------CGAC--GGTATC 44201 | ||| | ||| | || | ||| ||| |||| ||| || | | Sbjct 4574 CGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGCATGCGGATCGGCCGAGCGGGCAGC 4515 Query 44202 TAT--CTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACACTGTTCACGG 44259 | | || ||||||||||| ||||||||| || ||| | |||| ||| | |||| | Sbjct 4514 TGTACCTGACCAACTATGAATCTGTCCGCGAAGGCAAGATCGACCTGACGCATTTCAATG 4455 Query 44260 CCGTCTCACTCGACGAGGCGAGCGTGC-TGCGCTCGTT---CGGGTCCAAGACCTACCAG 44315 ||| || || ||||| || | ||||| ||||| || ||| ||||||||| || Sbjct 4454 CCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGTTTTGGCGGCACCAAGACCTTCCGC 4396 Query 44316 TCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCCACCGCCACACCCTCG 44375 |||| | |||||||||||| ||| || || |||||||| ||||| || ||| Sbjct 4395 GAGTTCATGCGGCTGTTCGACGGCATGCAATATAAGTTTGTCGCCACGGCCACGCCGTCG 4336 Query 44376 CCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGATGGACACCGGT 44435 |||||| || | |||||| | ||| || | || || | | | ||||| ||| Sbjct 4335 CCGAACGACTATATCGAGCTGCTGGCCTATGCCGCCTTCCTGGAGATCATGGATGTCGGC 4276 Query 44436 GCGGCGCTCACGCGTTGGTTCCAACGGGACTCCACGAAGGCGAACAACCTCACCCTCTAC 44495 ||| || || | ||| | ||| || | |||||| || | || ||| || | Sbjct 4275 CAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGAGAAGGCCGACGAACTGACCATCCAT 4216 Query 44496 CCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAACACCTGGGCGGCGTTCGTGCAATCC 44555 ||||| || ||| | || |||||||||||| |||| | |||||| || ||||| || Sbjct 4215 CCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAATAGCTGGGCCGCATTCGTCCAGCGG 4156 Query 44556 CCGGCAGACCTCGGTCACGACGCCACCGGCTACGACCTGCCGCCGCTGGAGGTGTTGTGG 44615 ||| || || ||| || | ||||| |||||||| |||||| ||| ||| Sbjct 4155 CCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGACCTGCCCGAGCTGGACGTGCGCTGG 4096 Query 44616 CATGAGGT 44623 |||||||| Sbjct 4095 CATGAGGT 4088 Score = 172 bits (190), Expect = 2e-38 Identities = 316/459 (69%), Gaps = 12/459 (3%) Strand=Plus/Minus Query 45347 CCTGATCGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGA 45406 |||||| ||||||||| | || || || ||| || || || |||||||||| || || Sbjct 3376 CCTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGA 3317 Query 45407 CTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCA 45466 |||||||| |||||||| || ||||||| |||||||||||||| || ||||| | Sbjct 3316 TTTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGA 3257 Query 45467 ACTGCTGCGCATCCTCGCGCCCGGGCGGATCTACGCCTGCCATGTCAAGGACCGCATCTT 45526 ||||||||| || | ||| || ||| | || ||||| ||||| ||| || Sbjct 3256 GCTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGC--GTT 3199 Query 45527 GTTC-----GGCAACGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGC-CGA 45580 |||| |||| | || || ||| | | ||| || |||||||| || || Sbjct 3198 GTTCCGTCGGGCA---TGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGC 3142 Query 45581 GGCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCATCGTGGTCAC 45640 || ||| || ||| || ||||||| ||| || |||||| | | | ||||| Sbjct 3141 TGC-ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCAC 3083 Query 45641 CGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGA 45700 |||||| || || || || || || |||||||||||| ||||||||||||| || Sbjct 3082 CGATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGA 3023 Query 45701 CGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGTTGTTCCACAAACCGCAGAC 45760 |||| | |||||||| ||| || ||||| | || |||||| ||| |||| ||| Sbjct 3022 TGCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGAC 2963 Query 45761 AGACAGGTCGAAGGGATACGCCGACACCCCCGTCACCAA 45799 ||| || || || || ||||| || |||||||| Sbjct 2962 CGACCGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924 >seq11405 Length=110570 Score = 125 bits (138), Expect = 3e-24 Identities = 101/122 (83%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 48932 GACTGGGTGATCGTGGGCGGCGAATCCGGCCCCGGCGCGCGGCCGATGCACCCCGACTGG 48991 |||||||||||||| |||||||| ||||||||| ||||| || ||||| ||||||||| Sbjct 75391 GACTGGGTGATCGTCGGCGGCGAGAGCGGCCCCGGTGCGCGTCCCATGCATCCCGACTGG 75332 Query 48992 GCGCGCAGCCTGCGCGACCAATGCCAGGCGGCCGGTGTGCCGTTCCTGTTCAAACAGTGG 49051 |||| ||||||||||||||| ||| |||| | || | | ||| ||||||| |||||| Sbjct 75331 GCGCTCAGCCTGCGCGACCAGTGCGAGGCCGTGGGCACGGCCTTCATGTTCAAGCAGTGG 75272 Query 49052 GG 49053 || Sbjct 75271 GG 75270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192755924136226