Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_026593.1 Length=59419 Score E Sequences producing significant alignments: (Bits) Value seq12569 279 2e-70 seq6089 219 2e-52 >seq12569 Length=80069 Score = 279 bits (308), Expect = 2e-70 Identities = 370/513 (72%), Gaps = 18/513 (4%) Strand=Plus/Minus Query 45452 GTGGATCTGATTGTCACCAGTATTCCGTTCTCCAACCACTACGAATACACGCCGAGCTAC 45511 |||| ||||| |||||| || |||||||| | || ||||| || |||||| |||| Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639 Query 45512 AACGACTTCGGCCACACCGACGACAACGCCCATTTCTGGGCGCAGATGGACTACCTCACG 45571 ||| ||||| ||||||||||||||||||||||||||| |||||||||| ||| | Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579 Query 45572 CCGCAACTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGC 45631 ||| | ||||||||| | |||||||||||||| | |||| |||||| |||||||| Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519 Query 45632 ATCTTGTTCGGAAACGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGCCGA- 45690 ||| || || | |||||| ||| ||| ||||||| ||||||| | ||| Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTCGCGGACGAC 62459 Query 45691 -----GGCGATCTTTCACGGCCGCAAACACGGCTTCGACTACCTCGGC---ATGATCACC 45742 |||| ||| |||||| |||||||| |||||||||| | || || | Sbjct 62458 TGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405 Query 45743 GTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAG 45802 || ||||| || || || || ||||||||||| || |||||||||||| |||||| Sbjct 62404 CTG---ACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAG 62348 Query 45803 TGCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCACAAA 45862 ||||| |||| | ||||||| ||| |||||| | || |||||||||| ||| Sbjct 62347 TGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAG 62288 Query 45863 CCGCAGACAGACAGGTCGAAGGGATACGCCGACACCCCCGTCACCAAATCCAAGGACGAC 45922 |||| | ||| ||| || || ||||||||| || || | || |||||| | Sbjct 62287 CCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGC 62228 Query 45923 TACAGCCGTGCCCGATGGCAGGTGGACGCGCAC 45955 |||||||| || || |||||| | ||||||||| Sbjct 62227 TACAGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195 Score = 152 bits (168), Expect = 2e-32 Identities = 436/655 (67%), Gaps = 19/655 (3%) Strand=Plus/Minus Query 44066 CACCAGCGTGACCTGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCG 44125 || ||||| | | |||| ||||||||||| || ||| || | ||||| || Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGCCGCCCTGTTCGCCGCC 64013 Query 44126 TTCGGATTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCG-ATTGT-CGCTAGCCAAGC 44183 ||||| |||| || | ||| | ||| ||||||| | ||| || | ||| || | | Sbjct 64012 TTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATGCGCGAG---ATC 63956 Query 44184 ATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACG 44243 ||| || | || |||||||| || ||||| || |||||| |||||| | | Sbjct 63955 TC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCGGG 63898 Query 44244 ACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTCGGTGGTG 44303 ||||| ||||| ||| | ||||||| |||| || | || || | | | | Sbjct 63897 ACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGATC 63838 Query 44304 ACGGAA---TCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACAC 44360 ||| |||| || |||||||| |||| || || ||||| ||| | ||||| | | Sbjct 63837 CCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC-C 63779 Query 44361 TGTT-CACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCG-GTCTTT--CGGGTCCAAG 44416 |||| | ||| || || || || ||||||||||| |||| | ||| ||| |||||| Sbjct 63778 TGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCAAG 63719 Query 44417 ACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGGCC 44476 |||| | |||| | ||||||||| ||| |||| || | |||||| |||||| Sbjct 63718 ACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGGCC 63659 Query 44477 ACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGATG 44536 |||||||| || ||| | || |||||| | ||| ||| | || || |||||| Sbjct 63658 ACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGATG 63599 Query 44537 GACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGC-ACCAAGGCGAATAACCT 44595 || ||| ||| || ||| |||| ||| |||||| | || | ||| ||| Sbjct 63598 GATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGACGC-CCT 63540 Query 44596 AACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGTT 44655 ||||| |||| || ||||||||||| |||||||| ||| | | ||||| ||| Sbjct 63539 CACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGGTCTGTT 63480 Query 44656 CGTGCA-ATCCCCAGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCC 44709 ||| || || ||| || || || | || | |||||| ||||||||||| Sbjct 63479 CGTCCAGCGGCCGAGC-GATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCC 63426 Score = 87.8 bits (96), Expect = 7e-13 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 47231 TGCCCCTTGCAGTTCGACATCGTTGATCGGCTGATCACTCGTTTCTCGAATCCTGGCGAG 47290 |||||| ||| ||||| ||||| || |||||||||| | | || | || ||||| Sbjct 61909 TGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCGAGCCGGGCGAC 61850 Query 47291 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTCTGAAACTTGGT 47350 |||||||||| ||||||||||| ||| |||||||| | || || | || | || Sbjct 61849 GTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCATCAAGCACGGG 61790 Query 47351 CGGCGCGGCCGTGGTGTCGAGTTGAATCCCGGCTACTACTTCGATGCTGTCAAGTATTTG 47410 || |||| | | |||| |||| || | ||||| |||| | ||| ||| | | Sbjct 61789 CGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTGTGAAGCACGTC 61730 Query 47411 CAAGCCGAGGAGCGCCAG--CGCGACATGCCGAGCCTGTTCGACCT 47454 | ||| || |||| || ||||| ||||| ||| |||||||| Sbjct 61729 GAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686 >seq6089 Length=13452 Score = 219 bits (242), Expect = 2e-52 Identities = 497/740 (67%), Gaps = 33/740 (4%) Strand=Plus/Minus Query 44020 TGGGCAT-CAAGTCGGCCCCGATGACGTTCACCCGATGCTGCTGCCACACCAGCGTGACC 44078 ||||||| | |||| | || ||||||| || ||||| ||| | |||||| || | Sbjct 4820 TGGGCATGCCGGTCGCCGCCAATGACGTGCATCCGATCCTGAAGGGCCACCAGGCCGAGC 4761 Query 44079 TGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCGTTCGGATTGGGCA 44138 |||| || ||||| |||| || ||||| || ||||||||||| |||||||| |||||| Sbjct 4760 TGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCGTTCGGCCTGGGCA 4701 Query 44139 AGACCGTGATGCAGCTGGAGATCGTGCGATTG--TCGCTAGCCAAGCATGGCGGTGGTAA 44196 || | || ||||||||||||||| |||| | | || ||| ||| ||||| | | Sbjct 4700 AGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGCTGGGCGGCCGGCA 4643 Query 44197 AGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCT 44256 |||||||| |||||||| |||| |||||| ||| | |||||| | ||||| Sbjct 4642 G---CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCGACGCGCTGATGCT 4586 Query 44257 AGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTC----------------GGTG 44300 ||| | || | ||| | ||| |||| | ||| || || Sbjct 4585 GGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGCATGCGGATCGGCC 4526 Query 44301 GTGACGGAATCTAT--CTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC 44358 | | || | || | || ||||||||||| ||||||||| || ||| | |||| ||| Sbjct 4525 GAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCAAGATCGACCTGAC 4466 Query 44359 ACTGTTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTT---GCGGTCTTT-CGGGTCCA 44414 | |||| |||| || || || || || | |||| ||||| || ||| ||| Sbjct 4465 GCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGTTTTGGCGGCACCA 4407 Query 44415 AGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGG 44474 |||||| || |||| | ||||||||||| | | || || ||||| |||| Sbjct 4406 AGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAGTTTGTCGCCACGG 4347 Query 44475 CCACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGA 44534 |||||||||| |||||| || | |||||| | ||| || | | || | | | | Sbjct 4346 CCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCCTTCCTGGAGATCA 4287 Query 44535 TGGACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGCACCAAGGCGAATAACC 44594 |||| |||| ||| || ||| ||| ||||| ||||| ||||| | | | Sbjct 4286 TGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGAGAAGGCCGACGAAC 4227 Query 44595 TAACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGT 44654 | ||| || | || || || || ||||||||||| ||| | |||| ||||||||| | Sbjct 4226 TGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAATAGCTGGGCCGCAT 4167 Query 44655 TCGTGCAATCCCC-AGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCCGTTG 44713 |||| || || ||| || ||||||| | || | |||||||||||||| | || Sbjct 4166 TCGTCCAGCGGCCGAGC-GATCTGGGTTTTTCCGACGAGGGCTATGACCTGCCCGAGCTG 4108 Query 44714 GATGTGCAGTGGCATGAGGT 44733 || |||| ||||||||||| Sbjct 4107 GACGTGCGCTGGCATGAGGT 4088 Score = 187 bits (206), Expect = 9e-43 Identities = 317/455 (70%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 45458 CTGATTGTCACCAGTATTCCGTTCTCCAACCACTACGAATACACGCCGAGCTACAACGAC 45517 |||||||||||||| | || || || ||| || ||||| |||||||||| || || Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316 Query 45518 TTCGGCCACACCGACGACAACGCCCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAA 45577 |||||||| |||||||| || |||||||| |||||||||||||| || ||||| | Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256 Query 45578 CTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 45637 ||||||||| || | ||||||||| | || || || ||||| ||| ||| Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGC--GTTG 3198 Query 45638 TTCGG--AAACGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGC-CGAGGCG 45694 ||| | | | || || ||| | | ||| || |||||||| || || || Sbjct 3197 TTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCTGC- 3139 Query 45695 ATCTTTCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGAT 45754 ||| ||| ||| || ||||||| ||| || |||||| | || | ||||||||| Sbjct 3138 ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACCGAT 3079 Query 45755 GTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCC 45814 || || || || || || || |||||||||||| | ||||||||||| || ||| Sbjct 3078 GTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGATGCC 3019 Query 45815 ACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCACAAACCGCAGACAGAC 45874 | | |||||||| ||| || ||||| | || ||||||| ||| |||| ||| ||| Sbjct 3018 AGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACCGAC 2959 Query 45875 AGGTCGAAGGGATACGCCGACACCCCCGTCACCAA 45909 || || || || ||||| || |||||||| Sbjct 2958 CGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189985219697798