Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_026593.1
Length=59419
Score E
Sequences producing significant alignments: (Bits) Value
seq12569 279 2e-70
seq6089 219 2e-52
>seq12569
Length=80069
Score = 279 bits (308), Expect = 2e-70
Identities = 370/513 (72%), Gaps = 18/513 (4%)
Strand=Plus/Minus
Query 45452 GTGGATCTGATTGTCACCAGTATTCCGTTCTCCAACCACTACGAATACACGCCGAGCTAC 45511
|||| ||||| |||||| || |||||||| | || ||||| || |||||| ||||
Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639
Query 45512 AACGACTTCGGCCACACCGACGACAACGCCCATTTCTGGGCGCAGATGGACTACCTCACG 45571
||| ||||| ||||||||||||||||||||||||||| |||||||||| ||| |
Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579
Query 45572 CCGCAACTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGC 45631
||| | ||||||||| | |||||||||||||| | |||| |||||| ||||||||
Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519
Query 45632 ATCTTGTTCGGAAACGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGCCGA- 45690
||| || || | |||||| ||| ||| ||||||| ||||||| | |||
Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTCGCGGACGAC 62459
Query 45691 -----GGCGATCTTTCACGGCCGCAAACACGGCTTCGACTACCTCGGC---ATGATCACC 45742
|||| ||| |||||| |||||||| |||||||||| | || || |
Sbjct 62458 TGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405
Query 45743 GTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAG 45802
|| ||||| || || || || ||||||||||| || |||||||||||| ||||||
Sbjct 62404 CTG---ACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAG 62348
Query 45803 TGCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCACAAA 45862
||||| |||| | ||||||| ||| |||||| | || |||||||||| |||
Sbjct 62347 TGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAG 62288
Query 45863 CCGCAGACAGACAGGTCGAAGGGATACGCCGACACCCCCGTCACCAAATCCAAGGACGAC 45922
|||| | ||| ||| || || ||||||||| || || | || |||||| |
Sbjct 62287 CCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGC 62228
Query 45923 TACAGCCGTGCCCGATGGCAGGTGGACGCGCAC 45955
|||||||| || || |||||| | |||||||||
Sbjct 62227 TACAGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195
Score = 152 bits (168), Expect = 2e-32
Identities = 436/655 (67%), Gaps = 19/655 (3%)
Strand=Plus/Minus
Query 44066 CACCAGCGTGACCTGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCG 44125
|| ||||| | | |||| ||||||||||| || ||| || | ||||| ||
Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGCCGCCCTGTTCGCCGCC 64013
Query 44126 TTCGGATTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCG-ATTGT-CGCTAGCCAAGC 44183
||||| |||| || | ||| | ||| ||||||| | ||| || | ||| || | |
Sbjct 64012 TTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATGCGCGAG---ATC 63956
Query 44184 ATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACG 44243
||| || | || |||||||| || ||||| || |||||| |||||| | |
Sbjct 63955 TC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCGGG 63898
Query 44244 ACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTCGGTGGTG 44303
||||| ||||| ||| | ||||||| |||| || | || || | | | |
Sbjct 63897 ACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGATC 63838
Query 44304 ACGGAA---TCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACAC 44360
||| |||| || |||||||| |||| || || ||||| ||| | ||||| | |
Sbjct 63837 CCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC-C 63779
Query 44361 TGTT-CACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCG-GTCTTT--CGGGTCCAAG 44416
|||| | ||| || || || || ||||||||||| |||| | ||| ||| ||||||
Sbjct 63778 TGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCAAG 63719
Query 44417 ACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGGCC 44476
|||| | |||| | ||||||||| ||| |||| || | |||||| ||||||
Sbjct 63718 ACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGGCC 63659
Query 44477 ACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGATG 44536
|||||||| || ||| | || |||||| | ||| ||| | || || ||||||
Sbjct 63658 ACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGATG 63599
Query 44537 GACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGC-ACCAAGGCGAATAACCT 44595
|| ||| ||| || ||| |||| ||| |||||| | || | ||| |||
Sbjct 63598 GATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGACGC-CCT 63540
Query 44596 AACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGTT 44655
||||| |||| || ||||||||||| |||||||| ||| | | ||||| |||
Sbjct 63539 CACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGGTCTGTT 63480
Query 44656 CGTGCA-ATCCCCAGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCC 44709
||| || || ||| || || || | || | |||||| |||||||||||
Sbjct 63479 CGTCCAGCGGCCGAGC-GATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCC 63426
Score = 87.8 bits (96), Expect = 7e-13
Identities = 156/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 47231 TGCCCCTTGCAGTTCGACATCGTTGATCGGCTGATCACTCGTTTCTCGAATCCTGGCGAG 47290
|||||| ||| ||||| ||||| || |||||||||| | | || | || |||||
Sbjct 61909 TGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCGAGCCGGGCGAC 61850
Query 47291 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTCTGAAACTTGGT 47350
|||||||||| ||||||||||| ||| |||||||| | || || | || | ||
Sbjct 61849 GTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCATCAAGCACGGG 61790
Query 47351 CGGCGCGGCCGTGGTGTCGAGTTGAATCCCGGCTACTACTTCGATGCTGTCAAGTATTTG 47410
|| |||| | | |||| |||| || | ||||| |||| | ||| ||| | |
Sbjct 61789 CGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTGTGAAGCACGTC 61730
Query 47411 CAAGCCGAGGAGCGCCAG--CGCGACATGCCGAGCCTGTTCGACCT 47454
| ||| || |||| || ||||| ||||| ||| ||||||||
Sbjct 61729 GAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686
>seq6089
Length=13452
Score = 219 bits (242), Expect = 2e-52
Identities = 497/740 (67%), Gaps = 33/740 (4%)
Strand=Plus/Minus
Query 44020 TGGGCAT-CAAGTCGGCCCCGATGACGTTCACCCGATGCTGCTGCCACACCAGCGTGACC 44078
||||||| | |||| | || ||||||| || ||||| ||| | |||||| || |
Sbjct 4820 TGGGCATGCCGGTCGCCGCCAATGACGTGCATCCGATCCTGAAGGGCCACCAGGCCGAGC 4761
Query 44079 TGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCGTTCGGATTGGGCA 44138
|||| || ||||| |||| || ||||| || ||||||||||| |||||||| ||||||
Sbjct 4760 TGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCGTTCGGCCTGGGCA 4701
Query 44139 AGACCGTGATGCAGCTGGAGATCGTGCGATTG--TCGCTAGCCAAGCATGGCGGTGGTAA 44196
|| | || ||||||||||||||| |||| | | || ||| ||| ||||| | |
Sbjct 4700 AGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGCTGGGCGGCCGGCA 4643
Query 44197 AGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCT 44256
|||||||| |||||||| |||| |||||| ||| | |||||| | |||||
Sbjct 4642 G---CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCGACGCGCTGATGCT 4586
Query 44257 AGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTC----------------GGTG 44300
||| | || | ||| | ||| |||| | ||| || ||
Sbjct 4585 GGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGCATGCGGATCGGCC 4526
Query 44301 GTGACGGAATCTAT--CTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC 44358
| | || | || | || ||||||||||| ||||||||| || ||| | |||| |||
Sbjct 4525 GAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCAAGATCGACCTGAC 4466
Query 44359 ACTGTTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTT---GCGGTCTTT-CGGGTCCA 44414
| |||| |||| || || || || || | |||| ||||| || ||| |||
Sbjct 4465 GCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGTTTTGGCGGCACCA 4407
Query 44415 AGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGG 44474
|||||| || |||| | ||||||||||| | | || || ||||| ||||
Sbjct 4406 AGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAGTTTGTCGCCACGG 4347
Query 44475 CCACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGA 44534
|||||||||| |||||| || | |||||| | ||| || | | || | | | |
Sbjct 4346 CCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCCTTCCTGGAGATCA 4287
Query 44535 TGGACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGCACCAAGGCGAATAACC 44594
|||| |||| ||| || ||| ||| ||||| ||||| ||||| | | |
Sbjct 4286 TGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGAGAAGGCCGACGAAC 4227
Query 44595 TAACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGT 44654
| ||| || | || || || || ||||||||||| ||| | |||| ||||||||| |
Sbjct 4226 TGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAATAGCTGGGCCGCAT 4167
Query 44655 TCGTGCAATCCCC-AGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCCGTTG 44713
|||| || || ||| || ||||||| | || | |||||||||||||| | ||
Sbjct 4166 TCGTCCAGCGGCCGAGC-GATCTGGGTTTTTCCGACGAGGGCTATGACCTGCCCGAGCTG 4108
Query 44714 GATGTGCAGTGGCATGAGGT 44733
|| |||| |||||||||||
Sbjct 4107 GACGTGCGCTGGCATGAGGT 4088
Score = 187 bits (206), Expect = 9e-43
Identities = 317/455 (70%), Gaps = 6/455 (1%)
Strand=Plus/Minus
Query 45458 CTGATTGTCACCAGTATTCCGTTCTCCAACCACTACGAATACACGCCGAGCTACAACGAC 45517
|||||||||||||| | || || || ||| || ||||| |||||||||| || ||
Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316
Query 45518 TTCGGCCACACCGACGACAACGCCCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAA 45577
|||||||| |||||||| || |||||||| |||||||||||||| || ||||| |
Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256
Query 45578 CTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 45637
||||||||| || | ||||||||| | || || || ||||| ||| |||
Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGC--GTTG 3198
Query 45638 TTCGG--AAACGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGC-CGAGGCG 45694
||| | | | || || ||| | | ||| || |||||||| || || ||
Sbjct 3197 TTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCTGC- 3139
Query 45695 ATCTTTCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGAT 45754
||| ||| ||| || ||||||| ||| || |||||| | || | |||||||||
Sbjct 3138 ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACCGAT 3079
Query 45755 GTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCC 45814
|| || || || || || || |||||||||||| | ||||||||||| || |||
Sbjct 3078 GTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGATGCC 3019
Query 45815 ACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCACAAACCGCAGACAGAC 45874
| | |||||||| ||| || ||||| | || ||||||| ||| |||| ||| |||
Sbjct 3018 AGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACCGAC 2959
Query 45875 AGGTCGAAGGGATACGCCGACACCCCCGTCACCAA 45909
|| || || || ||||| || ||||||||
Sbjct 2958 CGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 189985219697798
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