Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq9538 152 2e-32 seq10237 132 2e-26 seq10921 109 2e-19 seq7053 105 2e-18 seq9711 104 8e-18 >seq9538 Length=646221 Score = 152 bits (168), Expect = 2e-32 Identities = 327/480 (68%), Gaps = 14/480 (3%) Strand=Plus/Plus Query 4517 AAGGCCAAGCTCCTGATCGTGGACGAGTCGTCCATGGTCGACGAGTCGGTCGGTGAAGAC 4576 ||||| || ||| | ||| | ||||| | || ||||| ||||| | | || || Sbjct 517968 AAGGCAAAACTCGTCATCATCGACGAATGCTCGATGGTGGACGAACAGCTGGGGCGCGAT 518027 Query 4577 CTCCTGTCGTTCGGTGTGCCAATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCGGTG 4636 || ||||| ||||| ||| | | | ||||||||||| ||||||||||||||| | Sbjct 518028 CTGCTGTCTTTCGGCACGCCCGTTTTGGTGCTGGGCGACCCGGCCCAGCTGCCGCCGATC 518087 Query 4637 GCCGGGGCTGGATTCTTCACCAAGCAGAAGGCCGACTTCCTGCTGACCGACATCCACCGC 4696 |||| | || ||||||||| |||| || | || | ||||| ||||| ||||| ||| Sbjct 518088 TCCGGTGGCGGCTTCTTCACCGAGCACGAGCCGGATTATCTGCTCACCGAGATCCATCGC 518147 Query 4697 CAGGCCCGCGACAACCCCATCATTGAGATGTCGCGCATCGTCCGCGAGG---GTGGAACC 4753 ||||| ||||||||||| ||||| | || | | | ||| || || | | | | Sbjct 518148 CAGGCGCGCGACAACCCGATCATCAGGCTGGCACTCGACGTGCGTGAAGGCCGCGAGTTC 518207 Query 4754 CTGAACCTGGGCCGCTACGGAGACAGCG-AAGTCGTCCGGGGCGCTGACTTCCAGCGCGA 4812 |||| |||| || || | | ||| | || || || ||| || || || || Sbjct 518208 ATGAA---GGGCGACTTTGGCG-CCGCGCAGGTGATCGGGCGCGAGGATGTCACGCAGGA 518263 Query 4813 CTGGGTATTCCAGGCTGACCAGATTCTCGTCGGGAAAAACGACACCCGCCGAGCCTACAA 4872 | ||| || |||| |||||| | || ||||| || | || ||||| |||||| Sbjct 518264 CCTGGTGTTGAAGGCCGACCAGGTGCTGGTCGGTCGCAATCAGACGCGCCGCCGCTACAA 518323 Query 4873 CGCTCGCATCCGCGAGCTGCGCGGGGCCGACCG-AGCTTACCCTCTCAAG--GGCGACAA 4929 | ||| | ||||||||| |||| |||| | || | | |||| |||||||| Sbjct 518324 CCAGCGCCTGCGCGAGCTG-AAGGGGTTCACCGCCGACTATC--CGCAAGCCGGCGACAA 518380 Query 4930 GCTGGTCTGCCTTCGCAACAACCACGACTCGGGCCTGCTGAACGGCTCCCTCTGGACGGT 4989 |||||||||||| |||||| | | || | ||| ||||| |||||||| | |||| ||| Sbjct 518381 GCTGGTCTGCCTGCGCAACGATCCCGCCAAGGGGCTGCTCAACGGCTCGTTGTGGAAGGT 518440 Score = 100 bits (110), Expect = 1e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 4173 TTTTCCGCCTGTTCGGGTATGCCGGCACGGGCAAGACCACCCTGGCCCGCCACATCGCTG 4232 |||||||||||||||| || |||||||| ||||||||||| ||||| ||| | |||| | Sbjct 517708 TTTTCCGCCTGTTCGGTTACGCCGGCACCGGCAAGACCACGCTGGCGCGCTATTTCGCCG 517767 Query 4233 AGAACGTGGACGGGCTTGTGCTGTTCGCCGCCCCGACCGGCAAGGCCGCCTACGTCCTGA 4292 | | || ||||| | |||| ||||| || ||||||||||| || | || ||| Sbjct 517768 AACATGTCGACGGCCAGGTGCAATTCGCGGCTTTCACCGGCAAGGCGGCGCAGGTGCTGC 517827 Query 4293 AGACCAAGGGCTGCCCGAACACCAGCACGATCCACCAGCTGATCTACACCCCG 4345 | |||||| ||| || |||| ||||| |||||||||| |||| Sbjct 517828 GTTCGAAGGGCGCGGTGAATGCCCGCACCATCCATTCGCTGATCTACCGCCCG 517880 >seq10237 Length=30126 Score = 132 bits (146), Expect = 2e-26 Identities = 283/415 (68%), Gaps = 12/415 (3%) Strand=Plus/Minus Query 36713 TCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATT--CACCACGGACTGCGCCTGCT 36770 ||||||| || || ||||| ||||||||||||||| | || | ||| | ||| || Sbjct 24859 TCGGCCCGGCCGGTACCGGCAAGACCTTCCTGGCCGTAGCCAGCGCGGTCGAAGCC--CT 24802 Query 36771 GGAGGCCAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAA 36830 | | | | | ||||| || || | ||||| || || ||||||| ||||| Sbjct 24801 GAACGAATCGCGGGTGCAGCGCCTGATCTTGGTGCGCCCGGCGGTGGAGGCCGGCGAGAA 24742 Query 36831 GCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATGCT 36890 ||| |||| ||||||||||| | | ||||| | | ||| |||||| ||| || Sbjct 24741 GCTGGGCTTCCTGCCCGGCGACCTGAGCCAGAAGGTCGATCCCTACCTGCGACCGCTGTA 24682 Query 36891 GGACGCGGTGATCGACCTGGTTGGCCCG---ACGATGGCCAAGCGCCTGCAGGAGACCCG 36947 ||||| || ||| || | ||| | | | ||| ||||| ||| || ||| | | Sbjct 24681 CGACGCCCTGTACGAGATGATGGGCGTGGAAAAGGTGGTCAAGCTGCTGGAGAAGAAC-G 24623 Query 36948 CCAGCTCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTTCCT 37007 || |||||||||| ||||||||||||||||| ||||| || ||||||| ||||| | Sbjct 24622 TCA--TCGAGATCGCGCCGCTGGCCTACATGCGCGGCCGCACGCTCAACGATGCGTTCGT 24565 Query 37008 CATCGCCGACGAGATGCAGAACGCCACC-CCGCGACAGGCCGCGCTGCTGGTGACCCGCC 37066 ||| ||||| |||||| ||||| || | ||| | || | ||||||||| Sbjct 24564 GATCCTGGACGAAGCACAGAACACCACCATCGAG-CAGATGAAGATGTTCCTGACCCGCC 24506 Query 37067 TGGGCTTCGGAACGCGGGCCGTCTTGAACGGTGACCCGGCCCAGTGCGACCTCCC 37121 |||||| ||| | || || | | |||||||| | ||||| |||||| || Sbjct 24505 TGGGCTACGGCTCCACTGCGGTGGTCACCGGTGACCTGACCCAGACCGACCTGCC 24451 >seq10921 Length=44944 Score = 109 bits (120), Expect = 2e-19 Identities = 258/382 (68%), Gaps = 12/382 (3%) Strand=Plus/Minus Query 36713 TCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCACCACGGACTGCGCCTGCTGG 36772 ||||||| || |||||||| ||||||| ||| ||| | | || || | ||||| Sbjct 40774 TCGGCCCGGCCGGCACCGGCAAGACCTACCTAGCCGTGGCCTGCGCCGTGGACGCGCTGG 40715 Query 36773 AGGCCAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAAGC 36832 || || | | ||||| |||| |||| ||||| ||||| || || | ||| | Sbjct 40714 AGCGCAGCGCCGTGCAGCGCATCGTGCTCACGCGCCCGGCCGTGGAAGCGGGCGAGCGCC 40655 Query 36833 TCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATGCTGG 36892 | |||| ||||||||||| | || ||||| | | || |||||| |||| || | Sbjct 40654 TGGGCTTCCTGCCCGGCGACCTCACGCAGAAGGTCGACCCCTACCTGCGCCCGCTGTACG 40595 Query 36893 ACGCGGTGATCGACCTGGTTGGC-CCGACGATG-GCCAAGCGCCTGCAGGAGACCCGCCA 36950 ||||| | |||||| | ||| ||| | | || || |||| | ||| ||| | Sbjct 40594 ACGCGCTCTACGACCTCATGGGCTACGAGAAGGTGCAAAAGGCCTTC--GAG---CGCAA 40540 Query 36951 ---GCTCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTTCCT 37007 ||| |||||||| |||||||||| |||||| || || || | ||| || | ||| | Sbjct 40539 TGTGCTGGAGATCGCGCCGCTGGCCTTCATGCGCGGGCGCACGCTGAACAACGCCTTCGT 40480 Query 37008 CATCGCCGACGAGATGCAGAACGCCAC-CCCGCGACAGGCCGCGCTGCTGGTGACCCGCC 37066 |||| |||||| ||||||| |||| |||| | ||| | || | | || ||| Sbjct 40479 CATCCTGGACGAGGCGCAGAACACCACGCCCGAG-CAGATGAAGATGTTCCTCACGCGCA 40421 Query 37067 TGGGCTTCGGAACGCGGGCCGT 37088 | |||||||| | || ||||| Sbjct 40420 TCGGCTTCGGCGCCCGCGCCGT 40399 >seq7053 Length=464797 Score = 105 bits (116), Expect = 2e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 4517 AAGGCCAAGCTCCTGATCGTGGACGAGTCGTCCATGGTCGACGAGTCGGTCGGTGAAGAC 4576 ||||| |||| | ||| | || || | || ||||| |||||| | |||| | || Sbjct 49955 AAGGCGGCGCTCATCATCATCGATGAATGTTCGATGGTGGACGAGCAGCTCGGCAAGGAT 49896 Query 4577 CTCCTGTCGTTCGGTGTGCCAATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCGGTG 4636 || || ||||| ||| ||||||| || ||||| |||| |||||||||||||| Sbjct 49895 CTGATGAGCTTCGGCACGCCCATCCTCGTGCTCGGCGATCCCGGACAGCTGCCGCCGGTT 49836 Query 4637 GCCGGGGCTGGATTCTTCACCAAGCAGAAGGCCGACTTCCTGCTGACCGACATCCACCGC 4696 | || | || |||||||| ||||| || | || | ||||||| | || ||||| || Sbjct 49835 TCGGGCGGCGGCTTCTTCACGGAGCAGGAGCCGGATTACCTGCTGTCGGAAATCCATCGG 49776 Query 4697 CAGGCCCGCGACAACCCCATCAT 4719 |||||| ||||| |||||||| Sbjct 49775 CAGGCCAAGGACAATCCCATCAT 49753 >seq9711 Length=123622 Score = 104 bits (114), Expect = 8e-18 Identities = 283/425 (67%), Gaps = 20/425 (5%) Strand=Plus/Minus Query 36715 GGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCACCACGGAC-TGCGCCTGCTGGA 36773 || || || |||||||| ||||||| | | ||||| | ||| || | || |||||| Sbjct 99936 GGTCCGGCCGGCACCGGCAAGACCTACATCGCCAT-CTCCAAGGCCGTGGAGGCGCTGGA 99878 Query 36774 GGCCAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAAGCT 36833 |||| || || ||||| || | || |||||||||||||||| || | | Sbjct 99877 GGCCGGCCGCGTCAGCCGCATCGTCCTCTCGCGTCCCGCCGTCGAGGCCGGCGAATCGAT 99818 Query 36834 CGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATGCTGGA 36893 |||||| ||||| |||| ||| ||||| ||| |||| || |||||| |||| | || Sbjct 99817 CGGCTATCTGCCTGGCGACATGGAAGACAAGCTGGCGCCCTACCTGCGCCCGCTCTACGA 99758 Query 36894 CGCGGTGATCGA---CCTGGTTGGCCCGACGATGGCCAAGCGCCTGCAGGAGACCCGCCA 36950 ||| ||| ||| |||| | | | |||| | || |||| || || Sbjct 99757 CGCCCTGACCGATCGCCTGTCGGTCAAGCGGATG--CGGGC-CCTGATGGCCGAGGGCGC 99701 Query 36951 GCTCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTTCCTCAT 37010 | |||||||||| ||| | | || |||||| ||||| ||| | ||| || | ||| | | Sbjct 99700 GATCGAGATCGCGCCGGTCGGCTTCATGCGCGGCCGCACCCTGAACAACGCCTTCGTGGT 99641 Query 37011 CGCCGACGAGATGCAGAACGCCACCCCGCGACAGGCCGC----GCTGCTGGTGACCCGCC 37066 ||||||| |||||| ||| ||| || || | ||||| |||| |||| Sbjct 99640 GATCGACGAGGCCCAGAACTGCAC----GTACATGCAGCTGAAGATGCTGCTGACGCGCC 99585 Query 37067 TGGGCTTCGGAACGCG--GGCCGTCTTGAACGGTGACCCGGCCCAGTGCGACCTCCCGGC 37124 |||||| || || || | ||| | | ||| || ||| ||||| ||||||| | | Sbjct 99584 TGGGCT--GGCACTCGACGATGGTCGTCACCGGCGATCCGAACCAGTCTGACCTCCTGCC 99527 Query 37125 GGGCA 37129 ||||| Sbjct 99526 GGGCA 99522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180764468899242