Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_026597.1
Length=63334
Score E
Sequences producing significant alignments: (Bits) Value
seq12569 284 5e-72
seq6089 206 1e-48
seq11405 84.2 9e-12
>seq12569
Length=80069
Score = 284 bits (314), Expect = 5e-72
Identities = 570/834 (68%), Gaps = 31/834 (4%)
Strand=Plus/Minus
Query 46969 CAAGTTCAACGACCTGATCCAGAGCTTGCACCGGATCCAGCGGTTCGGCCAAACCCA-CC 47027
||| ||||||||| | |||||| | ||||| |||||||| ||| || || ||
Sbjct 63014 CAAATTCAACGACTTCATCCAGGCGATCCACCGCATCCAGCGATTCCTGCAGGGGCATCC 62955
Query 47028 CTTGCACAGCCCATTTGATCCACTCCGAAACCGAACGGGAAGTGGTGCGGGTCGTCCGCG 47087
| | | | || | ||||| || |||| | ||| || | ||| ||||| | | | |
Sbjct 62954 CGTCGAGATCC-ACGTGATCTACGCCGAGAGCGAGCGCGCCGTGCTGCGGACCCTGCTGG 62896
Query 47088 AGAAATGGGCGCAACACCGGGAGTTGACATCAACGATGACCGACATCATCTACGAGTATG 47147
|||| |||||||| ||| ||| || | || |||| || |||||| ||| || |
Sbjct 62895 AGAAGTGGGCGCAGCACGAGGAAATGGCGAAGACCATGAGCGCGATCATCCGCGAATACG 62836
Query 47148 GGCTTGACCCCGAGGCAATTTCGGAAGCGCTGCAACGCTCCATCGG-GTGC--GAACGCA 47204
| || | || | || || | | ||| ||| |||| || ||| || || |
Sbjct 62835 GCCTGTCCAACGCCGACATGGCGAAGGTGCTCACCCGCGCCATGGGCGTGAAGGATCGGA 62776
Query 47205 TCGAAGCATCCGGCGAGGGGTGGCTGTTCGCCAACAACGACTGCGTGCCCGAAACCGAGT 47264
|||| | ||||||| | | || | ||| | ||| ||| |||||| | |
Sbjct 62775 TCGAGGTGACCGGCGACAACTATCGCTTGGTGAACGAAGACACCGTCGTCGAAAC-GCGA 62717
Query 47265 CG-ATG--GGCG-ACAGCTCGGTAGATCTGATTGTCACCAGCATTCCGTTCTCAAACCAC 47320
|| ||| |||| ||||| || | ||||| |||||| || |||||||| | ||
Sbjct 62716 CGGATGCCGGCGGACAGC---GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAG 62660
Query 47321 TACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTTCTGG 47380
|||||||| |||||| |||| ||| ||||| ||||||||||||||||| |||||||||
Sbjct 62659 TACGAGTATTCGCCGAACTACGCCGATTTCGGACACACCGACGACAACGCCCATTTCTGG 62600
Query 47381 GCGCAGATGGACTACCTCACGCCGCAACTGCTGCGCATCCTCGCGCCCGGGCGGATCTAC 47440
|||||||||| ||| | ||| | ||||||||| | |||||||| || ||| | |
Sbjct 62599 CGACAGATGGACTTTCTCGCCCCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCC 62540
Query 47441 GCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAACGTCACCGGCGCAGGCGTTCCCACC 47500
||| |||||| |||||||| ||| || || | |||||| ||| ||| |||
Sbjct 62539 GCCATCCACGTGAAGGACCGGATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACC 62480
Query 47501 GTCTCCCCGTTCCACGCCGA------GGCGATCTTTCACGGCCGCAAACACGGCTTCGAC 47554
|||| ||||||| | ||| |||| ||| |||||| |||||||| |
Sbjct 62479 GTCTACCCGTTCGCGGACGACTGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCC 62426
Query 47555 TACCTCGGC---ATGATCACCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTAC 47611
||||||||| | || || | || ||||| || || || || ||||||||||| ||
Sbjct 62425 TACCTCGGCGAAAAGACCAACCTG---ACCGACGTCGTCCGCGAGAACAACCAGACCTAT 62369
Query 47612 CGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAA 47671
|||||||||||| ||||||||||| |||| | ||||||| ||| ||||||
Sbjct 62368 CGGCTGGGCTGGAGCGAGCAGTGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAA 62309
Query 47672 TACGTTCTGCTGTTCCACAAACCGCAGACAGACAGGTCGAAGGGATACGCCGACACCCCC 47731
| || |||||||||| ||| |||| | ||| ||| || || ||||||||| ||
Sbjct 62308 AAGGTGCTGCTGTTCCGCAAGCCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCG 62249
Query 47732 GTCACCAAATCCAAGGACGACTACAGCCGTGCCCGATGGCAGGTGGACGCGCAC 47785
|| | || |||||| ||||||||| || || |||||| | |||||||||
Sbjct 62248 GTGTCGAAGGACAAGGATCGCTACAGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195
Score = 206 bits (228), Expect = 1e-48
Identities = 456/670 (68%), Gaps = 29/670 (4%)
Strand=Plus/Minus
Query 45896 CACCAGCGCGATCTGGTGCGTTGGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGC 45954
|| ||||| | |||| | ||||||||| | | || ||| ||| | ||||| ||
Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGC-CGCCCTGTTCGCCGC 64014
Query 45955 GTTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCG---CCTGTCGCTAGCCAA 46011
||||||||||| || | || | ||| ||||||| | ||| | || ||| || |
Sbjct 64013 CTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATG-CGCGAG---A 63958
Query 46012 GCACGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCA 46071
| | ||| ||| ||| ||||||| || ||||| ||||||||| |||||| |
Sbjct 63957 TCTC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCG 63900
Query 46072 CGACGCCAACATGCTGGGCATCGAAACCCGGTTCGTTCGCCGCACAGAAGAAGTCGGCGG 46131
|||||| |||||||||| | ||||||| |||| || | || || |||||
Sbjct 63899 GGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGA----GGCGG 63844
Query 46132 -CGAT------GGTATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACC 46184
|||| || ||||||| ||||||||||||| ||||| || || ||||||||||
Sbjct 63843 ACGATCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACC 63784
Query 46185 CGACACTGTTT-ACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGC---GCTCGTTCGGG 46240
| | |||||| ||| || || || |||||||| ||||| |||| ||| |||
Sbjct 63783 C-ATCCTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGC 63725
Query 46241 TCCAAGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTGCCCTACCGGTACGTCGCC 46300
|||||||||| | |||| | ||||||||| ||| |||| || | |||||||
Sbjct 63724 TCCAAGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCC 63665
Query 46301 ACCGCCACACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGG 46360
|| ||||| || ||||| ||| | || |||||| || ||| ||| | || ||
Sbjct 63664 ACGGCCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGC 63605
Query 46361 GTAATGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGACCAAGGCGAA 46419
|| ||||| ||| ||| || || | |||| ||| ||| ||| || | || |
Sbjct 63604 GTGATGGATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCG-A 63546
Query 46420 CAACCTCACCCTGTACCCCCACAAGGAGCGCGAGTTCTTCTTGTGGCTCAACACCTGGGC 46479
| |||||||||| |||| ||||| ||||||||||||| ||||| | | |||||
Sbjct 63545 CGCCCTCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGG 63486
Query 46480 CGCGTTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTATGACCTGCCGCC 46539
|||||| || ||| || ||||| | || | |||||| |||||||||||
Sbjct 63485 TCTGTTCGTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCC 63426
Query 46540 GCTGGAGGTG 46549
||| |||||
Sbjct 63425 CCTGCAGGTG 63416
Score = 102 bits (112), Expect = 3e-17
Identities = 166/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 48057 AAATGCACGTGTGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATAACCCGGTTCTCGA 48116
||| |||| |||||||| ||| ||||| ||||| ||||||||||| | || || ||
Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861
Query 48117 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 48176
| || ||||| |||||||||| ||||||||||| ||| |||||||| | || ||
Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801
Query 48177 TGAAACTTGGTCGGCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 48236
| || | || || |||| | | ||||||||| || | ||||| |||| | ||
Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741
Query 48237 TCAAGTATTTGCAAGCCGAAGAGCGCCGG--CGCGACATGCCGAGCCTGTTCGACCT 48291
| ||| | | | ||| | |||| | ||||| ||||| ||| ||||||||
Sbjct 61740 TGAAGCACGTCGAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686
>seq6089
Length=13452
Score = 206 bits (228), Expect = 1e-48
Identities = 469/693 (68%), Gaps = 32/693 (5%)
Strand=Plus/Minus
Query 45896 CACCAGCGCGATCTGGTGCGTTGGGCGGTCGCCGGGGGTAGGCGCGCGATCTTCGCGGCG 45955
|||||| ||| ||||| || ||||| |||| || || | |||||||||||||| |||
Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714
Query 45956 TTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCGCCTG--TCGCTAGCCAAGC 46013
||||||||||||||| |||| ||||||||||||||| |||||| | | || ||| |||
Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGC 4656
Query 46014 ACGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACG 46073
||||| ||| || ||||||| |||||||| ||||| |||||| ||| | ||
Sbjct 4655 TGGGCGGCCGGC-AG--CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599
Query 46074 ACGCCAACATGCTGGGCATCGAAACCCGGTTCGTTCGCCGCACAG--AAGAAGTCG---- 46127
|||| ||||||||| | || | ||| | ||| | || | ||| |||
Sbjct 4598 ACGCGCTGATGCTGGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGC 4539
Query 46128 --GCGG------CGA--TGGTA--TCTACCTCACCAACTACGAGAGCGTTCGCGATGGAA 46175
|||| ||| || | | ||||| |||||||| || || ||||| || |
Sbjct 4538 ATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCA 4479
Query 46176 AGCTCGACCCGACACTGTTTACGGCCGTCTCACTCGACGAGGCGAGCGTG-CTGCGCTCG 46234
|| |||||| ||| | || | |||| || || ||||| || | |||| ||||||
Sbjct 4478 AGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGT 4420
Query 46235 TT---CGGGTCCAAGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTGCCCTACCGG 46291
|| ||| ||||||||| || |||| | ||||||||||| ||| || |
Sbjct 4419 TTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAG 4360
Query 46292 TACGTCGCCACCGCCACACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGC 46351
| |||||||| ||||| || ||||||||| || | |||||| | ||| || | |
Sbjct 4359 TTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCC 4300
Query 46352 TATCTCGGGGTAATGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGAC 46410
| || | | | ||||| ||| ||| || || | ||| ||||| || |||
Sbjct 4299 TTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGA- 4241
Query 46411 CAAGGCGAACAACCTCACCCTGTACCCCCACAAGGAGCGCGAGTTCTTCTTGTGGCTCAA 46470
||||| || | || ||| | | || |||||||| || |||| ||||| | ||
Sbjct 4240 GAAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAA 4181
Query 46471 CACCTGGGCCGCGTTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTATGA 46530
| ||||||||| ||||| || ||| || || ||| || | ||||||||
Sbjct 4180 TAGCTGGGCCGCATTCGTCCAGCGGCCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGA 4121
Query 46531 CCTGCCGCCGCTGGAGGTGCTGTGGCATGAGGT 46563
|||||| |||||| |||| |||||||||||
Sbjct 4120 CCTGCCCGAGCTGGACGTGCGCTGGCATGAGGT 4088
Score = 172 bits (190), Expect = 2e-38
Identities = 314/455 (69%), Gaps = 6/455 (1%)
Strand=Plus/Minus
Query 47288 CTGATTGTCACCAGCATTCCGTTCTCAAACCACTACGAGTACACGCCGAGCTACAACGAC 47347
||||||||||||||| | || || | ||| || || || |||||||||| || ||
Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316
Query 47348 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAA 47407
|||||||| |||||||| || ||||||| |||||||||||||| || ||||| |
Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256
Query 47408 CTGCTGCGCATCCTCGCGCCCGGGCGGATCTACGCCTGCCACGTCAAGGACCGCATCTTG 47467
||||||||| || | ||| || ||| | || || || ||||| ||| | ||
Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGCGT--TG 3198
Query 47468 TTCGGAAACG--TCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGC-CGAGGCG 47524
||| | | | || || ||| | | ||| || |||||||| || || ||
Sbjct 3197 TTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCTGC- 3139
Query 47525 ATCTTTCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGAT 47584
||| ||| ||| || ||||||| ||| || |||||| | || | |||||||||
Sbjct 3138 ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACCGAT 3079
Query 47585 GTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCC 47644
|| || || || || || || |||||||||||| | ||||||||||| || |||
Sbjct 3078 GTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGATGCC 3019
Query 47645 ACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCACAAACCGCAGACAGAC 47704
| | |||||||| ||| || ||||| | || ||||||| ||| |||| ||| |||
Sbjct 3018 AGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACCGAC 2959
Query 47705 AGGTCGAAGGGATACGCCGACACCCCCGTCACCAA 47739
|| || || || ||||| || ||||||||
Sbjct 2958 CGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924
>seq11405
Length=110570
Score = 84.2 bits (92), Expect = 9e-12
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 51596 GACTGGATCATCGTCGGCGGCGAGTCCGGACCCGGCGCTCGACCGATGCACCCCGACTGG 51655
|||||| | ||||||||||||||| ||| ||||| || || || ||||| |||||||||
Sbjct 75391 GACTGGGTGATCGTCGGCGGCGAGAGCGGCCCCGGTGCGCGTCCCATGCATCCCGACTGG 75332
Query 51656 GCGCGTGCTCTAAGGGACCAGAGGAACACGGTTGGTGCCGCGTTTCTGTTCAAGCAGTGG 51715
|||| || | |||||| | | | || || | || || ||||||||||||||
Sbjct 75331 GCGCTCAGCCTGCGCGACCAGTGCGAGGCCGTGGGCACGGCCTTCATGTTCAAGCAGTGG 75272
Query 51716 GGTGAATGG 51724
|| || |||
Sbjct 75271 GGCGAGTGG 75263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 202506826783205
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |