Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_026597.1 Length=63334 Score E Sequences producing significant alignments: (Bits) Value seq12569 284 5e-72 seq6089 206 1e-48 seq11405 84.2 9e-12 >seq12569 Length=80069 Score = 284 bits (314), Expect = 5e-72 Identities = 570/834 (68%), Gaps = 31/834 (4%) Strand=Plus/Minus Query 46969 CAAGTTCAACGACCTGATCCAGAGCTTGCACCGGATCCAGCGGTTCGGCCAAACCCA-CC 47027 ||| ||||||||| | |||||| | ||||| |||||||| ||| || || || Sbjct 63014 CAAATTCAACGACTTCATCCAGGCGATCCACCGCATCCAGCGATTCCTGCAGGGGCATCC 62955 Query 47028 CTTGCACAGCCCATTTGATCCACTCCGAAACCGAACGGGAAGTGGTGCGGGTCGTCCGCG 47087 | | | | || | ||||| || |||| | ||| || | ||| ||||| | | | | Sbjct 62954 CGTCGAGATCC-ACGTGATCTACGCCGAGAGCGAGCGCGCCGTGCTGCGGACCCTGCTGG 62896 Query 47088 AGAAATGGGCGCAACACCGGGAGTTGACATCAACGATGACCGACATCATCTACGAGTATG 47147 |||| |||||||| ||| ||| || | || |||| || |||||| ||| || | Sbjct 62895 AGAAGTGGGCGCAGCACGAGGAAATGGCGAAGACCATGAGCGCGATCATCCGCGAATACG 62836 Query 47148 GGCTTGACCCCGAGGCAATTTCGGAAGCGCTGCAACGCTCCATCGG-GTGC--GAACGCA 47204 | || | || | || || | | ||| ||| |||| || ||| || || | Sbjct 62835 GCCTGTCCAACGCCGACATGGCGAAGGTGCTCACCCGCGCCATGGGCGTGAAGGATCGGA 62776 Query 47205 TCGAAGCATCCGGCGAGGGGTGGCTGTTCGCCAACAACGACTGCGTGCCCGAAACCGAGT 47264 |||| | ||||||| | | || | ||| | ||| ||| |||||| | | Sbjct 62775 TCGAGGTGACCGGCGACAACTATCGCTTGGTGAACGAAGACACCGTCGTCGAAAC-GCGA 62717 Query 47265 CG-ATG--GGCG-ACAGCTCGGTAGATCTGATTGTCACCAGCATTCCGTTCTCAAACCAC 47320 || ||| |||| ||||| || | ||||| |||||| || |||||||| | || Sbjct 62716 CGGATGCCGGCGGACAGC---GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAG 62660 Query 47321 TACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTTCTGG 47380 |||||||| |||||| |||| ||| ||||| ||||||||||||||||| ||||||||| Sbjct 62659 TACGAGTATTCGCCGAACTACGCCGATTTCGGACACACCGACGACAACGCCCATTTCTGG 62600 Query 47381 GCGCAGATGGACTACCTCACGCCGCAACTGCTGCGCATCCTCGCGCCCGGGCGGATCTAC 47440 |||||||||| ||| | ||| | ||||||||| | |||||||| || ||| | | Sbjct 62599 CGACAGATGGACTTTCTCGCCCCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCC 62540 Query 47441 GCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAACGTCACCGGCGCAGGCGTTCCCACC 47500 ||| |||||| |||||||| ||| || || | |||||| ||| ||| ||| Sbjct 62539 GCCATCCACGTGAAGGACCGGATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACC 62480 Query 47501 GTCTCCCCGTTCCACGCCGA------GGCGATCTTTCACGGCCGCAAACACGGCTTCGAC 47554 |||| ||||||| | ||| |||| ||| |||||| |||||||| | Sbjct 62479 GTCTACCCGTTCGCGGACGACTGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCC 62426 Query 47555 TACCTCGGC---ATGATCACCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTAC 47611 ||||||||| | || || | || ||||| || || || || ||||||||||| || Sbjct 62425 TACCTCGGCGAAAAGACCAACCTG---ACCGACGTCGTCCGCGAGAACAACCAGACCTAT 62369 Query 47612 CGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAA 47671 |||||||||||| ||||||||||| |||| | ||||||| ||| |||||| Sbjct 62368 CGGCTGGGCTGGAGCGAGCAGTGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAA 62309 Query 47672 TACGTTCTGCTGTTCCACAAACCGCAGACAGACAGGTCGAAGGGATACGCCGACACCCCC 47731 | || |||||||||| ||| |||| | ||| ||| || || ||||||||| || Sbjct 62308 AAGGTGCTGCTGTTCCGCAAGCCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCG 62249 Query 47732 GTCACCAAATCCAAGGACGACTACAGCCGTGCCCGATGGCAGGTGGACGCGCAC 47785 || | || |||||| ||||||||| || || |||||| | ||||||||| Sbjct 62248 GTGTCGAAGGACAAGGATCGCTACAGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195 Score = 206 bits (228), Expect = 1e-48 Identities = 456/670 (68%), Gaps = 29/670 (4%) Strand=Plus/Minus Query 45896 CACCAGCGCGATCTGGTGCGTTGGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGC 45954 || ||||| | |||| | ||||||||| | | || ||| ||| | ||||| || Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGC-CGCCCTGTTCGCCGC 64014 Query 45955 GTTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCG---CCTGTCGCTAGCCAA 46011 ||||||||||| || | || | ||| ||||||| | ||| | || ||| || | Sbjct 64013 CTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATG-CGCGAG---A 63958 Query 46012 GCACGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCA 46071 | | ||| ||| ||| ||||||| || ||||| ||||||||| |||||| | Sbjct 63957 TCTC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCG 63900 Query 46072 CGACGCCAACATGCTGGGCATCGAAACCCGGTTCGTTCGCCGCACAGAAGAAGTCGGCGG 46131 |||||| |||||||||| | ||||||| |||| || | || || ||||| Sbjct 63899 GGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGA----GGCGG 63844 Query 46132 -CGAT------GGTATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACC 46184 |||| || ||||||| ||||||||||||| ||||| || || |||||||||| Sbjct 63843 ACGATCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACC 63784 Query 46185 CGACACTGTTT-ACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGC---GCTCGTTCGGG 46240 | | |||||| ||| || || || |||||||| ||||| |||| ||| ||| Sbjct 63783 C-ATCCTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGC 63725 Query 46241 TCCAAGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTGCCCTACCGGTACGTCGCC 46300 |||||||||| | |||| | ||||||||| ||| |||| || | ||||||| Sbjct 63724 TCCAAGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCC 63665 Query 46301 ACCGCCACACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGG 46360 || ||||| || ||||| ||| | || |||||| || ||| ||| | || || Sbjct 63664 ACGGCCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGC 63605 Query 46361 GTAATGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGACCAAGGCGAA 46419 || ||||| ||| ||| || || | |||| ||| ||| ||| || | || | Sbjct 63604 GTGATGGATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCG-A 63546 Query 46420 CAACCTCACCCTGTACCCCCACAAGGAGCGCGAGTTCTTCTTGTGGCTCAACACCTGGGC 46479 | |||||||||| |||| ||||| ||||||||||||| ||||| | | ||||| Sbjct 63545 CGCCCTCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGG 63486 Query 46480 CGCGTTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTATGACCTGCCGCC 46539 |||||| || ||| || ||||| | || | |||||| ||||||||||| Sbjct 63485 TCTGTTCGTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCC 63426 Query 46540 GCTGGAGGTG 46549 ||| ||||| Sbjct 63425 CCTGCAGGTG 63416 Score = 102 bits (112), Expect = 3e-17 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 48057 AAATGCACGTGTGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATAACCCGGTTCTCGA 48116 ||| |||| |||||||| ||| ||||| ||||| ||||||||||| | || || || Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861 Query 48117 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 48176 | || ||||| |||||||||| ||||||||||| ||| |||||||| | || || Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801 Query 48177 TGAAACTTGGTCGGCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 48236 | || | || || |||| | | ||||||||| || | ||||| |||| | || Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741 Query 48237 TCAAGTATTTGCAAGCCGAAGAGCGCCGG--CGCGACATGCCGAGCCTGTTCGACCT 48291 | ||| | | | ||| | |||| | ||||| ||||| ||| |||||||| Sbjct 61740 TGAAGCACGTCGAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686 >seq6089 Length=13452 Score = 206 bits (228), Expect = 1e-48 Identities = 469/693 (68%), Gaps = 32/693 (5%) Strand=Plus/Minus Query 45896 CACCAGCGCGATCTGGTGCGTTGGGCGGTCGCCGGGGGTAGGCGCGCGATCTTCGCGGCG 45955 |||||| ||| ||||| || ||||| |||| || || | |||||||||||||| ||| Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714 Query 45956 TTCGGCCTGGGCAAGACGGTGATGCAGCTGGAGATCGTGCGCCTG--TCGCTAGCCAAGC 46013 ||||||||||||||| |||| ||||||||||||||| |||||| | | || ||| ||| Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGC 4656 Query 46014 ACGGCGGTGGGCGAGGCTTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACG 46073 ||||| ||| || ||||||| |||||||| ||||| |||||| ||| | || Sbjct 4655 TGGGCGGCCGGC-AG--CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599 Query 46074 ACGCCAACATGCTGGGCATCGAAACCCGGTTCGTTCGCCGCACAG--AAGAAGTCG---- 46127 |||| ||||||||| | || | ||| | ||| | || | ||| ||| Sbjct 4598 ACGCGCTGATGCTGGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGC 4539 Query 46128 --GCGG------CGA--TGGTA--TCTACCTCACCAACTACGAGAGCGTTCGCGATGGAA 46175 |||| ||| || | | ||||| |||||||| || || ||||| || | Sbjct 4538 ATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCA 4479 Query 46176 AGCTCGACCCGACACTGTTTACGGCCGTCTCACTCGACGAGGCGAGCGTG-CTGCGCTCG 46234 || |||||| ||| | || | |||| || || ||||| || | |||| |||||| Sbjct 4478 AGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGT 4420 Query 46235 TT---CGGGTCCAAGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTGCCCTACCGG 46291 || ||| ||||||||| || |||| | ||||||||||| ||| || | Sbjct 4419 TTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAG 4360 Query 46292 TACGTCGCCACCGCCACACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGC 46351 | |||||||| ||||| || ||||||||| || | |||||| | ||| || | | Sbjct 4359 TTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCC 4300 Query 46352 TATCTCGGGGTAATGGACACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGAC 46410 | || | | | ||||| ||| ||| || || | ||| ||||| || ||| Sbjct 4299 TTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGA- 4241 Query 46411 CAAGGCGAACAACCTCACCCTGTACCCCCACAAGGAGCGCGAGTTCTTCTTGTGGCTCAA 46470 ||||| || | || ||| | | || |||||||| || |||| ||||| | || Sbjct 4240 GAAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAA 4181 Query 46471 CACCTGGGCCGCGTTCGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTATGA 46530 | ||||||||| ||||| || ||| || || ||| || | |||||||| Sbjct 4180 TAGCTGGGCCGCATTCGTCCAGCGGCCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGA 4121 Query 46531 CCTGCCGCCGCTGGAGGTGCTGTGGCATGAGGT 46563 |||||| |||||| |||| ||||||||||| Sbjct 4120 CCTGCCCGAGCTGGACGTGCGCTGGCATGAGGT 4088 Score = 172 bits (190), Expect = 2e-38 Identities = 314/455 (69%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 47288 CTGATTGTCACCAGCATTCCGTTCTCAAACCACTACGAGTACACGCCGAGCTACAACGAC 47347 ||||||||||||||| | || || | ||| || || || |||||||||| || || Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316 Query 47348 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAA 47407 |||||||| |||||||| || ||||||| |||||||||||||| || ||||| | Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256 Query 47408 CTGCTGCGCATCCTCGCGCCCGGGCGGATCTACGCCTGCCACGTCAAGGACCGCATCTTG 47467 ||||||||| || | ||| || ||| | || || || ||||| ||| | || Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGCGT--TG 3198 Query 47468 TTCGGAAACG--TCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGC-CGAGGCG 47524 ||| | | | || || ||| | | ||| || |||||||| || || || Sbjct 3197 TTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCTGC- 3139 Query 47525 ATCTTTCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGAT 47584 ||| ||| ||| || ||||||| ||| || |||||| | || | ||||||||| Sbjct 3138 ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACCGAT 3079 Query 47585 GTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCC 47644 || || || || || || || |||||||||||| | ||||||||||| || ||| Sbjct 3078 GTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGATGCC 3019 Query 47645 ACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCACAAACCGCAGACAGAC 47704 | | |||||||| ||| || ||||| | || ||||||| ||| |||| ||| ||| Sbjct 3018 AGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACCGAC 2959 Query 47705 AGGTCGAAGGGATACGCCGACACCCCCGTCACCAA 47739 || || || || ||||| || |||||||| Sbjct 2958 CGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924 >seq11405 Length=110570 Score = 84.2 bits (92), Expect = 9e-12 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 51596 GACTGGATCATCGTCGGCGGCGAGTCCGGACCCGGCGCTCGACCGATGCACCCCGACTGG 51655 |||||| | ||||||||||||||| ||| ||||| || || || ||||| ||||||||| Sbjct 75391 GACTGGGTGATCGTCGGCGGCGAGAGCGGCCCCGGTGCGCGTCCCATGCATCCCGACTGG 75332 Query 51656 GCGCGTGCTCTAAGGGACCAGAGGAACACGGTTGGTGCCGCGTTTCTGTTCAAGCAGTGG 51715 |||| || | |||||| | | | || || | || || |||||||||||||| Sbjct 75331 GCGCTCAGCCTGCGCGACCAGTGCGAGGCCGTGGGCACGGCCTTCATGTTCAAGCAGTGG 75272 Query 51716 GGTGAATGG 51724 || || ||| Sbjct 75271 GGCGAGTGG 75263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202506826783205