Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_026604.1
Length=53636
Score E
Sequences producing significant alignments: (Bits) Value
seq12569 253 7e-63
seq6089 219 1e-52
>seq12569
Length=80069
Score = 253 bits (280), Expect = 7e-63
Identities = 380/539 (71%), Gaps = 18/539 (3%)
Strand=Plus/Minus
Query 41019 GTGGATCTGATTGTCACTAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTAC 41078
|||| ||||| ||||| || |||||||| | || |||||||| |||||| ||||
Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639
Query 41079 AACGACTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACA 41138
||| ||||| ||||||||||||||||| ||||||||| |||||||||| ||| |
Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579
Query 41139 CCGCAGCTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGC 41198
||| ||||||||||| | |||||||||||||| | |||| |||||| ||||||||
Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519
Query 41199 ATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTCCACGCCGA- 41257
||| || || | |||||| |||| | | || || | ||||||| | |||
Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTCGCGGACGAC 62459
Query 41258 -----GGCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGC---ATGATCACC 41309
|||| ||| |||||| |||||||| |||||||||| | || || |
Sbjct 62458 TGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405
Query 41310 GTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAG 41369
|| ||||| || || || || ||||||||||| || |||||||||||| ||||||
Sbjct 62404 CTG---ACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAG 62348
Query 41370 TGCAAAGACGCCACCAAGATGGGTGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAA 41429
||||| |||| | ||||| | ||| |||||| | | |||||||||| |||
Sbjct 62347 TGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAG 62288
Query 41430 CCGCAAACAGACAGGTCGAAGGGATACGCCGACACACCCGTCACCAAATCCAAGGACGAA 41489
|||| | ||| ||| || || ||||||||| || || | || ||||||
Sbjct 62287 CCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGC 62228
Query 41490 TACACCCGTGCCCGATGGCAGGTGGACGCGCACGCGTTCTGGCGCTCGAGCGGCAACCG 41548
|||| ||| || || |||||| | ||||||||| || |||||| |||| ||||
Sbjct 62227 TACAGCCGGGCGCGCTGGCAGCTCGACGCGCACCACTTGATGCGCTCCTCCGGCGACCG 62169
Score = 152 bits (168), Expect = 2e-32
Identities = 436/655 (67%), Gaps = 19/655 (3%)
Strand=Plus/Minus
Query 39633 CACCAGCGTGACCTGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCG 39692
|| ||||| | | |||| ||||||||||| || ||| || | ||||| ||
Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGCCGCCCTGTTCGCCGCC 64013
Query 39693 TTCGGATTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCG-ATTGT-CGCTAGCCAAGC 39750
||||| |||| || | ||| | ||| ||||||| | ||| || | ||| || | |
Sbjct 64012 TTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATGCGCGAG---ATC 63956
Query 39751 ATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACG 39810
||| || | || |||||||| || ||||| || |||||| |||||| | |
Sbjct 63955 TC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCGGG 63898
Query 39811 ACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTCGGTGGTG 39870
||||| ||||| ||| | ||||||| |||| || | || || | | | |
Sbjct 63897 ACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGATC 63838
Query 39871 ACGGAA---TCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACAC 39927
||| |||| || |||||||| |||| || || ||||| ||| | ||||| | |
Sbjct 63837 CCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC-C 63779
Query 39928 TGTT-CACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCG-GTCTTT--CGGGTCCAAG 39983
|||| | ||| || || || || ||||||||||| |||| | ||| ||| ||||||
Sbjct 63778 TGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCAAG 63719
Query 39984 ACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGGCC 40043
|||| | |||| | ||||||||| ||| |||| || | |||||| ||||||
Sbjct 63718 ACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGGCC 63659
Query 40044 ACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGATG 40103
|||||||| || ||| | || |||||| | ||| ||| | || || ||||||
Sbjct 63658 ACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGATG 63599
Query 40104 GACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGC-ACCAAGGCGAATAACCT 40162
|| ||| ||| || ||| |||| ||| |||||| | || | ||| |||
Sbjct 63598 GATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGACGC-CCT 63540
Query 40163 AACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGTT 40222
||||| |||| || ||||||||||| |||||||| ||| | | ||||| |||
Sbjct 63539 CACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGGTCTGTT 63480
Query 40223 CGTGCA-ATCCCCAGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCC 40276
||| || || ||| || || || | || | |||||| |||||||||||
Sbjct 63479 CGTCCAGCGGCCGAGC-GATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCC 63426
Score = 100 bits (110), Expect = 1e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 41794 AAATGCATGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGA 41853
||| ||| |||||||||||| ||||| ||||| ||||||||||||| | | ||
Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861
Query 41854 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 41913
| || ||||| |||||||||| ||||||||||| ||| |||||||| | || ||
Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801
Query 41914 TGAAACTCGGTCGGCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 41973
| || | ||| || |||| | | ||||||||| || | ||||| |||| | ||
Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741
Query 41974 TCAAG 41978
| |||
Sbjct 61740 TGAAG 61736
>seq6089
Length=13452
Score = 219 bits (242), Expect = 1e-52
Identities = 497/740 (67%), Gaps = 33/740 (4%)
Strand=Plus/Minus
Query 39587 TGGGCAT-CAAGTCGGCCCCGATGACGTTCACCCGATGCTGCTGCCACACCAGCGTGACC 39645
||||||| | |||| | || ||||||| || ||||| ||| | |||||| || |
Sbjct 4820 TGGGCATGCCGGTCGCCGCCAATGACGTGCATCCGATCCTGAAGGGCCACCAGGCCGAGC 4761
Query 39646 TGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCGTTCGGATTGGGCA 39705
|||| || ||||| |||| || ||||| || ||||||||||| |||||||| ||||||
Sbjct 4760 TGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCGTTCGGCCTGGGCA 4701
Query 39706 AGACCGTGATGCAGCTGGAGATCGTGCGATTG--TCGCTAGCCAAGCATGGCGGTGGTAA 39763
|| | || ||||||||||||||| |||| | | || ||| ||| ||||| | |
Sbjct 4700 AGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGCTGGGCGGCCGGCA 4643
Query 39764 AGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCT 39823
|||||||| |||||||| |||| |||||| ||| | |||||| | |||||
Sbjct 4642 G---CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCGACGCGCTGATGCT 4586
Query 39824 AGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTC----------------GGTG 39867
||| | || | ||| | ||| |||| | ||| || ||
Sbjct 4585 GGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGCATGCGGATCGGCC 4526
Query 39868 GTGACGGAATCTAT--CTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC 39925
| | || | || | || ||||||||||| ||||||||| || ||| | |||| |||
Sbjct 4525 GAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCAAGATCGACCTGAC 4466
Query 39926 ACTGTTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTT---GCGGTCTTT-CGGGTCCA 39981
| |||| |||| || || || || || | |||| ||||| || ||| |||
Sbjct 4465 GCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGTTTTGGCGGCACCA 4407
Query 39982 AGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGG 40041
|||||| || |||| | ||||||||||| | | || || ||||| ||||
Sbjct 4406 AGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAGTTTGTCGCCACGG 4347
Query 40042 CCACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGA 40101
|||||||||| |||||| || | |||||| | ||| || | | || | | | |
Sbjct 4346 CCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCCTTCCTGGAGATCA 4287
Query 40102 TGGACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGCACCAAGGCGAATAACC 40161
|||| |||| ||| || ||| ||| ||||| ||||| ||||| | | |
Sbjct 4286 TGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGAGAAGGCCGACGAAC 4227
Query 40162 TAACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGT 40221
| ||| || | || || || || ||||||||||| ||| | |||| ||||||||| |
Sbjct 4226 TGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAATAGCTGGGCCGCAT 4167
Query 40222 TCGTGCAATCCCC-AGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCCGTTG 40280
|||| || || ||| || ||||||| | || | |||||||||||||| | ||
Sbjct 4166 TCGTCCAGCGGCCGAGC-GATCTGGGTTTTTCCGACGAGGGCTATGACCTGCCCGAGCTG 4108
Query 40281 GATGTGCAGTGGCATGAGGT 40300
|| |||| |||||||||||
Sbjct 4107 GACGTGCGCTGGCATGAGGT 4088
Score = 163 bits (180), Expect = 1e-35
Identities = 312/455 (69%), Gaps = 6/455 (1%)
Strand=Plus/Minus
Query 41025 CTGATTGTCACTAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 41084
||||||||||| ||| | || || || ||| || || || |||||||||| || ||
Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316
Query 41085 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAG 41144
|||||||| |||||||| || ||||||| |||||||||||||| || || || ||
Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256
Query 41145 CTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 41204
||||||||| || | ||||||||| | || || || ||||| ||| |||
Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGC--GTTG 3198
Query 41205 TTCGG--AAACGTCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTCCACGC-CGAGGCG 41261
||| | | | || || ||| | | ||| | |||||||| || || ||
Sbjct 3197 TTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCTGC- 3139
Query 41262 ATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGAT 41321
||| || ||| || ||||||| ||| || |||||| | || | |||||||||
Sbjct 3138 ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACCGAT 3079
Query 41322 GTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCC 41381
|| || || || || || || |||||||||||| | ||||||||||| || |||
Sbjct 3078 GTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGATGCC 3019
Query 41382 ACCAAGATGGGTGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCGCAAACAGAC 41441
| | ||||| |||||| || ||||| | || ||||||| ||| |||| || |||
Sbjct 3018 AGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACCGAC 2959
Query 41442 AGGTCGAAGGGATACGCCGACACACCCGTCACCAA 41476
|| || || || ||||| || ||||||||
Sbjct 2958 CGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 171482928973284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |