Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_026604.1 Length=53636 Score E Sequences producing significant alignments: (Bits) Value seq12569 253 7e-63 seq6089 219 1e-52 >seq12569 Length=80069 Score = 253 bits (280), Expect = 7e-63 Identities = 380/539 (71%), Gaps = 18/539 (3%) Strand=Plus/Minus Query 41019 GTGGATCTGATTGTCACTAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTAC 41078 |||| ||||| ||||| || |||||||| | || |||||||| |||||| |||| Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639 Query 41079 AACGACTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACA 41138 ||| ||||| ||||||||||||||||| ||||||||| |||||||||| ||| | Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579 Query 41139 CCGCAGCTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGC 41198 ||| ||||||||||| | |||||||||||||| | |||| |||||| |||||||| Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519 Query 41199 ATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTCCACGCCGA- 41257 ||| || || | |||||| |||| | | || || | ||||||| | ||| Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTCGCGGACGAC 62459 Query 41258 -----GGCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGC---ATGATCACC 41309 |||| ||| |||||| |||||||| |||||||||| | || || | Sbjct 62458 TGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405 Query 41310 GTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAG 41369 || ||||| || || || || ||||||||||| || |||||||||||| |||||| Sbjct 62404 CTG---ACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAG 62348 Query 41370 TGCAAAGACGCCACCAAGATGGGTGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAA 41429 ||||| |||| | ||||| | ||| |||||| | | |||||||||| ||| Sbjct 62347 TGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAG 62288 Query 41430 CCGCAAACAGACAGGTCGAAGGGATACGCCGACACACCCGTCACCAAATCCAAGGACGAA 41489 |||| | ||| ||| || || ||||||||| || || | || |||||| Sbjct 62287 CCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGC 62228 Query 41490 TACACCCGTGCCCGATGGCAGGTGGACGCGCACGCGTTCTGGCGCTCGAGCGGCAACCG 41548 |||| ||| || || |||||| | ||||||||| || |||||| |||| |||| Sbjct 62227 TACAGCCGGGCGCGCTGGCAGCTCGACGCGCACCACTTGATGCGCTCCTCCGGCGACCG 62169 Score = 152 bits (168), Expect = 2e-32 Identities = 436/655 (67%), Gaps = 19/655 (3%) Strand=Plus/Minus Query 39633 CACCAGCGTGACCTGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCG 39692 || ||||| | | |||| ||||||||||| || ||| || | ||||| || Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGCCGCCCTGTTCGCCGCC 64013 Query 39693 TTCGGATTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCG-ATTGT-CGCTAGCCAAGC 39750 ||||| |||| || | ||| | ||| ||||||| | ||| || | ||| || | | Sbjct 64012 TTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATGCGCGAG---ATC 63956 Query 39751 ATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACG 39810 ||| || | || |||||||| || ||||| || |||||| |||||| | | Sbjct 63955 TC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCGGG 63898 Query 39811 ACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTCGGTGGTG 39870 ||||| ||||| ||| | ||||||| |||| || | || || | | | | Sbjct 63897 ACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGATC 63838 Query 39871 ACGGAA---TCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACAC 39927 ||| |||| || |||||||| |||| || || ||||| ||| | ||||| | | Sbjct 63837 CCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC-C 63779 Query 39928 TGTT-CACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCG-GTCTTT--CGGGTCCAAG 39983 |||| | ||| || || || || ||||||||||| |||| | ||| ||| |||||| Sbjct 63778 TGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCAAG 63719 Query 39984 ACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGGCC 40043 |||| | |||| | ||||||||| ||| |||| || | |||||| |||||| Sbjct 63718 ACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGGCC 63659 Query 40044 ACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGATG 40103 |||||||| || ||| | || |||||| | ||| ||| | || || |||||| Sbjct 63658 ACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGATG 63599 Query 40104 GACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGC-ACCAAGGCGAATAACCT 40162 || ||| ||| || ||| |||| ||| |||||| | || | ||| ||| Sbjct 63598 GATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCGACGC-CCT 63540 Query 40163 AACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGTT 40222 ||||| |||| || ||||||||||| |||||||| ||| | | ||||| ||| Sbjct 63539 CACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGGTCTGTT 63480 Query 40223 CGTGCA-ATCCCCAGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCC 40276 ||| || || ||| || || || | || | |||||| ||||||||||| Sbjct 63479 CGTCCAGCGGCCGAGC-GATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCC 63426 Score = 100 bits (110), Expect = 1e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 41794 AAATGCATGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGA 41853 ||| ||| |||||||||||| ||||| ||||| ||||||||||||| | | || Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861 Query 41854 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 41913 | || ||||| |||||||||| ||||||||||| ||| |||||||| | || || Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801 Query 41914 TGAAACTCGGTCGGCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 41973 | || | ||| || |||| | | ||||||||| || | ||||| |||| | || Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741 Query 41974 TCAAG 41978 | ||| Sbjct 61740 TGAAG 61736 >seq6089 Length=13452 Score = 219 bits (242), Expect = 1e-52 Identities = 497/740 (67%), Gaps = 33/740 (4%) Strand=Plus/Minus Query 39587 TGGGCAT-CAAGTCGGCCCCGATGACGTTCACCCGATGCTGCTGCCACACCAGCGTGACC 39645 ||||||| | |||| | || ||||||| || ||||| ||| | |||||| || | Sbjct 4820 TGGGCATGCCGGTCGCCGCCAATGACGTGCATCCGATCCTGAAGGGCCACCAGGCCGAGC 4761 Query 39646 TGGTGCGCTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCGTTCGGATTGGGCA 39705 |||| || ||||| |||| || ||||| || ||||||||||| |||||||| |||||| Sbjct 4760 TGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCGTTCGGCCTGGGCA 4701 Query 39706 AGACCGTGATGCAGCTGGAGATCGTGCGATTG--TCGCTAGCCAAGCATGGCGGTGGTAA 39763 || | || ||||||||||||||| |||| | | || ||| ||| ||||| | | Sbjct 4700 AGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGCTGGGCGGCCGGCA 4643 Query 39764 AGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCT 39823 |||||||| |||||||| |||| |||||| ||| | |||||| | ||||| Sbjct 4642 G---CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCGACGCGCTGATGCT 4586 Query 39824 AGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTC----------------GGTG 39867 ||| | || | ||| | ||| |||| | ||| || || Sbjct 4585 GGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGCATGCGGATCGGCC 4526 Query 39868 GTGACGGAATCTAT--CTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC 39925 | | || | || | || ||||||||||| ||||||||| || ||| | |||| ||| Sbjct 4525 GAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCAAGATCGACCTGAC 4466 Query 39926 ACTGTTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTT---GCGGTCTTT-CGGGTCCA 39981 | |||| |||| || || || || || | |||| ||||| || ||| ||| Sbjct 4465 GCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGTTTTGGCGGCACCA 4407 Query 39982 AGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGG 40041 |||||| || |||| | ||||||||||| | | || || ||||| |||| Sbjct 4406 AGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAGTTTGTCGCCACGG 4347 Query 40042 CCACGCCGTCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGA 40101 |||||||||| |||||| || | |||||| | ||| || | | || | | | | Sbjct 4346 CCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCCTTCCTGGAGATCA 4287 Query 40102 TGGACACCGGCGCGGCTCTCACTAGGTGGTTCCAGCGGGACAGCACCAAGGCGAATAACC 40161 |||| |||| ||| || ||| ||| ||||| ||||| ||||| | | | Sbjct 4286 TGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGAGAAGGCCGACGAAC 4227 Query 40162 TAACCCTCTACCCACATAAAGAGCGCGAATTCTGGCTTTGGCTCAATACCTGGGCCGCGT 40221 | ||| || | || || || || ||||||||||| ||| | |||| ||||||||| | Sbjct 4226 TGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAATAGCTGGGCCGCAT 4167 Query 40222 TCGTGCAATCCCC-AGCTGACCTGGGTTATGACGCCACCGGCTATGACCTGCCGCCGTTG 40280 |||| || || ||| || ||||||| | || | |||||||||||||| | || Sbjct 4166 TCGTCCAGCGGCCGAGC-GATCTGGGTTTTTCCGACGAGGGCTATGACCTGCCCGAGCTG 4108 Query 40281 GATGTGCAGTGGCATGAGGT 40300 || |||| ||||||||||| Sbjct 4107 GACGTGCGCTGGCATGAGGT 4088 Score = 163 bits (180), Expect = 1e-35 Identities = 312/455 (69%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 41025 CTGATTGTCACTAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 41084 ||||||||||| ||| | || || || ||| || || || |||||||||| || || Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316 Query 41085 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAG 41144 |||||||| |||||||| || ||||||| |||||||||||||| || || || || Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256 Query 41145 CTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 41204 ||||||||| || | ||||||||| | || || || ||||| ||| ||| Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGC--GTTG 3198 Query 41205 TTCGG--AAACGTCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTCCACGC-CGAGGCG 41261 ||| | | | || || ||| | | ||| | |||||||| || || || Sbjct 3197 TTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCTGC- 3139 Query 41262 ATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGAT 41321 ||| || ||| || ||||||| ||| || |||||| | || | ||||||||| Sbjct 3138 ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACCGAT 3079 Query 41322 GTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCC 41381 || || || || || || || |||||||||||| | ||||||||||| || ||| Sbjct 3078 GTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGATGCC 3019 Query 41382 ACCAAGATGGGTGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCGCAAACAGAC 41441 | | ||||| |||||| || ||||| | || ||||||| ||| |||| || ||| Sbjct 3018 AGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACCGAC 2959 Query 41442 AGGTCGAAGGGATACGCCGACACACCCGTCACCAA 41476 || || || || ||||| || |||||||| Sbjct 2958 CGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171482928973284