Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_026608.1 Length=42093 Score E Sequences producing significant alignments: (Bits) Value seq9622 109 1e-19 >seq9622 Length=151425 Score = 109 bits (120), Expect = 1e-19 Identities = 336/504 (67%), Gaps = 27/504 (5%) Strand=Plus/Minus Query 38643 TTCCACCTTGACCCGCTTTGGTCTT-CGCCGAATATCGACGCTTGCGGTATTGACAACTA 38701 ||| |||| || ||||| ||| | |||| ||||||||| ||| || ||||| || Sbjct 83083 TTCAACCTCGATCCGCTCTGGGCCGACGCC-AATATCGACTTCATCGGCATCGACAATTA 83025 Query 38702 TTTGCCGTTGTCCGATTGGCGCGACGGAACGCAGCACCTTGACTACGACGGGGTTAACGG 38761 |||| |||| || ||||||||||| || ||| || || | |||| || ||| Sbjct 83024 CCTGCCCCTGTCGGACTGGCGCGACGGCTCGGCGCATCTGGATTTCGACCCGGC---CGG 82968 Query 38762 GCCGGTTTCG-CCAT--ACGAACCCGACTACCTGCGGTCGAATATCGAAGGCGGCGAATA 38818 ||| ||| |||| |||| | | ||| || || || ||| ||||||||||| Sbjct 82967 GCCA---TCGACCATCTACGACCAGGCCTATCTTCGCGGCAACGTCGCCGGCGGCGAATA 82911 Query 38819 CTTCGATTGGTATTAC--TTGAACGCAG-CCGACCGGGCCGCGCAAATCCGCACGCCTAT 38875 ||||| |||| ||| || || || ||| || |||||| |||||||| || Sbjct 82910 TTTCGACTGGTTCTACGCTT---CGGAGGCCGCGCGCAACGCGCAGGCACGCACGCCGAT 82854 Query 38876 TACCGACGGTGCCTACGGTAAACCATGGGTATTCCGCAACAAAGAC-TTCCGTTCTTGGT 38934 |||||||| ||| | || | || | || ||||||||||| ||| ||| | | |||| Sbjct 82853 CACCGACGGCGCCCATGGCGAGCCCTTCGTTTTCCGCAACAAGGACATTCTGGGC-TGGT 82795 Query 38935 GGAATAACTACCATTACAACCGCCCCGGCTACG-TCGAA--GACGCTTC-GCCGACGGGT 38990 || || |||| ||||||| || ||| | ||| | | || ||| || || Sbjct 82794 GGCGGAATGCCCATCACAACCGGCCGGGCGGGGTTCGGAGCGGCGGTTCTACCAAC---- 82739 Query 38991 TGGGTTCCTAATTCAAAGCCGATTTGGTTTACTGAATTCGGCTTTCCTGCGGTCGATAAA 39050 ||||| || || |||||| | | || || ||| | |||| || || ||||| || Sbjct 82738 TGGGTGCCGCGCTCGAAGCCGCTGCGTTTCACCGAACTGGGCTGCCCGGCCGTCGACAAG 82679 Query 39051 GGCACCAATCAACCAAACGTTTTCTACGACCCTAAGTCTTCCGAAAGCGCCTACCCCTAC 39110 ||| |||| || || ||| ||||| ||||| ||||| || ||| || || | Sbjct 82678 GGCGCCAACCAGCCGAACCTTTTCCCCGACCGCCGCTCTTCGGAGGGCGGCTTTCCGTGG 82619 Query 39111 TTTTCTACGGGTTTGCGCGACGAC 39134 ||||| | ||| ||||||||| Sbjct 82618 TTTTCCAGCGGTGCCCGCGACGAC 82595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134551934362690