Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_026608.1
Length=42093
Score E
Sequences producing significant alignments: (Bits) Value
seq9622 109 1e-19
>seq9622
Length=151425
Score = 109 bits (120), Expect = 1e-19
Identities = 336/504 (67%), Gaps = 27/504 (5%)
Strand=Plus/Minus
Query 38643 TTCCACCTTGACCCGCTTTGGTCTT-CGCCGAATATCGACGCTTGCGGTATTGACAACTA 38701
||| |||| || ||||| ||| | |||| ||||||||| ||| || ||||| ||
Sbjct 83083 TTCAACCTCGATCCGCTCTGGGCCGACGCC-AATATCGACTTCATCGGCATCGACAATTA 83025
Query 38702 TTTGCCGTTGTCCGATTGGCGCGACGGAACGCAGCACCTTGACTACGACGGGGTTAACGG 38761
|||| |||| || ||||||||||| || ||| || || | |||| || |||
Sbjct 83024 CCTGCCCCTGTCGGACTGGCGCGACGGCTCGGCGCATCTGGATTTCGACCCGGC---CGG 82968
Query 38762 GCCGGTTTCG-CCAT--ACGAACCCGACTACCTGCGGTCGAATATCGAAGGCGGCGAATA 38818
||| ||| |||| |||| | | ||| || || || ||| |||||||||||
Sbjct 82967 GCCA---TCGACCATCTACGACCAGGCCTATCTTCGCGGCAACGTCGCCGGCGGCGAATA 82911
Query 38819 CTTCGATTGGTATTAC--TTGAACGCAG-CCGACCGGGCCGCGCAAATCCGCACGCCTAT 38875
||||| |||| ||| || || || ||| || |||||| |||||||| ||
Sbjct 82910 TTTCGACTGGTTCTACGCTT---CGGAGGCCGCGCGCAACGCGCAGGCACGCACGCCGAT 82854
Query 38876 TACCGACGGTGCCTACGGTAAACCATGGGTATTCCGCAACAAAGAC-TTCCGTTCTTGGT 38934
|||||||| ||| | || | || | || ||||||||||| ||| ||| | | ||||
Sbjct 82853 CACCGACGGCGCCCATGGCGAGCCCTTCGTTTTCCGCAACAAGGACATTCTGGGC-TGGT 82795
Query 38935 GGAATAACTACCATTACAACCGCCCCGGCTACG-TCGAA--GACGCTTC-GCCGACGGGT 38990
|| || |||| ||||||| || ||| | ||| | | || ||| || ||
Sbjct 82794 GGCGGAATGCCCATCACAACCGGCCGGGCGGGGTTCGGAGCGGCGGTTCTACCAAC---- 82739
Query 38991 TGGGTTCCTAATTCAAAGCCGATTTGGTTTACTGAATTCGGCTTTCCTGCGGTCGATAAA 39050
||||| || || |||||| | | || || ||| | |||| || || ||||| ||
Sbjct 82738 TGGGTGCCGCGCTCGAAGCCGCTGCGTTTCACCGAACTGGGCTGCCCGGCCGTCGACAAG 82679
Query 39051 GGCACCAATCAACCAAACGTTTTCTACGACCCTAAGTCTTCCGAAAGCGCCTACCCCTAC 39110
||| |||| || || ||| ||||| ||||| ||||| || ||| || || |
Sbjct 82678 GGCGCCAACCAGCCGAACCTTTTCCCCGACCGCCGCTCTTCGGAGGGCGGCTTTCCGTGG 82619
Query 39111 TTTTCTACGGGTTTGCGCGACGAC 39134
||||| | ||| |||||||||
Sbjct 82618 TTTTCCAGCGGTGCCCGCGACGAC 82595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 134551934362690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |