Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_026610.2 Length=56637 Score E Sequences producing significant alignments: (Bits) Value seq11091 93.3 2e-14 seq7743 86.0 2e-12 seq9516 80.6 1e-10 >seq11091 Length=75312 Score = 93.3 bits (102), Expect = 2e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 20599 CTCCCATTGCGAACACCATATCGCACCGATCATTGGTCTGGCCACAGTAGCCTACATCCC 20658 ||| |||||||| ||||| || | |||||||| || ||| || | |||| | || Sbjct 64576 CTCGCATTGCGAGCACCACATGGTGCCGATCATCGGCAAGGCGCATGTCGGCTACCTGCC 64635 Query 20659 GAACGGGAAGATCGTCGGCCTGTCCAAGATCACGCGCTTGGTCGATGCCTTCGCCCGCCG 20718 | |||| ||| ||||||||||||| |||||| | ||| | ||||| ||| || | ||| Sbjct 64636 GGACGGCAAGGTCGTCGGCCTGTCGAAGATCGCCCGCGTCGTCGACATCTTTGCGCACCG 64695 Query 20719 CCTACAAGTGCAGGAGCGTTTGACCGATCAGATTGC 20754 ||| || ||||||| |||||| |||||||| Sbjct 64696 CCTGCAGACGCAGGAGGCGATGACCGCCCAGATTGC 64731 >seq7743 Length=219709 Score = 86.0 bits (94), Expect = 2e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 20563 TGACGAGATGGTGGTGGTCAAGGATATTCCATTCTTCTCCCATTGCGAACACCATATCGC 20622 |||||| ||||| |||| || || || |||||||||||||||||||||||||| | Sbjct 18283 TGACGATGTGGTGCTGGTGCGCGACATCCCCTTCTTCTCCCATTGCGAACACCATATGGT 18224 Query 20623 ACCGATCATTGGTCTGGCCACAGTAGCCTACATCCCGAACGGGAAGATCGTCGGCCTGTC 20682 |||||| | ||| ||| || ||||| | ||| || | | |||||||| Sbjct 18223 GCCGATCGTCGGTAAGGCGCATGTCGCCTATCTTCCGGCTGGCCGCGTGCTTGGCCTGTC 18164 Query 20683 CAAGATCACGCGCTTGGTCGATGCCTTCGCCCGCCGCCTACAAGTGCAGGAGCGTTTGAC 20742 ||||| | ||| | ||||| ||||| ||||||||| || |||||| |||| Sbjct 18163 GAAGATTGCCCGCGTCGTCGAAATCTTCGGCCGCCGCCTGCAGACGCAGGAAAACATGAC 18104 Query 20743 CGATCAGATTGC 20754 || ||||| || Sbjct 18103 CGCGCAGATCGC 18092 >seq9516 Length=250571 Score = 80.6 bits (88), Expect = 1e-10 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 20602 CCATTGCGAACACCATATCGCACCGATCATTGGTCTGGCCACAGTAGCCTACATCCCGAA 20661 ||| ||||||||||| || || ||| || | || |||| || |||||||| |||| Sbjct 193578 CCACTGCGAACACCACATGGCGCCGTTCCTGGGCAAGGCCTGGGTCGCCTACATGCCGAC 193519 Query 20662 CGGGAAGATCGTCGGCCTGTCCAAGATCACGCGCTTGGTCGATGCCTTCGCC 20713 ||| ||| |||| |||||||| ||| | ||||| ||||||| ||||||| Sbjct 193518 CGGCAAGGTCGTGGGCCTGTCGAAGCTGGCGCGCCTGGTCGAGATCTTCGCC 193467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181084411675042