Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_026610.2
Length=56637
Score E
Sequences producing significant alignments: (Bits) Value
seq11091 93.3 2e-14
seq7743 86.0 2e-12
seq9516 80.6 1e-10
>seq11091
Length=75312
Score = 93.3 bits (102), Expect = 2e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 20599 CTCCCATTGCGAACACCATATCGCACCGATCATTGGTCTGGCCACAGTAGCCTACATCCC 20658
||| |||||||| ||||| || | |||||||| || ||| || | |||| | ||
Sbjct 64576 CTCGCATTGCGAGCACCACATGGTGCCGATCATCGGCAAGGCGCATGTCGGCTACCTGCC 64635
Query 20659 GAACGGGAAGATCGTCGGCCTGTCCAAGATCACGCGCTTGGTCGATGCCTTCGCCCGCCG 20718
| |||| ||| ||||||||||||| |||||| | ||| | ||||| ||| || | |||
Sbjct 64636 GGACGGCAAGGTCGTCGGCCTGTCGAAGATCGCCCGCGTCGTCGACATCTTTGCGCACCG 64695
Query 20719 CCTACAAGTGCAGGAGCGTTTGACCGATCAGATTGC 20754
||| || ||||||| |||||| ||||||||
Sbjct 64696 CCTGCAGACGCAGGAGGCGATGACCGCCCAGATTGC 64731
>seq7743
Length=219709
Score = 86.0 bits (94), Expect = 2e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 20563 TGACGAGATGGTGGTGGTCAAGGATATTCCATTCTTCTCCCATTGCGAACACCATATCGC 20622
|||||| ||||| |||| || || || |||||||||||||||||||||||||| |
Sbjct 18283 TGACGATGTGGTGCTGGTGCGCGACATCCCCTTCTTCTCCCATTGCGAACACCATATGGT 18224
Query 20623 ACCGATCATTGGTCTGGCCACAGTAGCCTACATCCCGAACGGGAAGATCGTCGGCCTGTC 20682
|||||| | ||| ||| || ||||| | ||| || | | ||||||||
Sbjct 18223 GCCGATCGTCGGTAAGGCGCATGTCGCCTATCTTCCGGCTGGCCGCGTGCTTGGCCTGTC 18164
Query 20683 CAAGATCACGCGCTTGGTCGATGCCTTCGCCCGCCGCCTACAAGTGCAGGAGCGTTTGAC 20742
||||| | ||| | ||||| ||||| ||||||||| || |||||| ||||
Sbjct 18163 GAAGATTGCCCGCGTCGTCGAAATCTTCGGCCGCCGCCTGCAGACGCAGGAAAACATGAC 18104
Query 20743 CGATCAGATTGC 20754
|| ||||| ||
Sbjct 18103 CGCGCAGATCGC 18092
>seq9516
Length=250571
Score = 80.6 bits (88), Expect = 1e-10
Identities = 85/112 (76%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 20602 CCATTGCGAACACCATATCGCACCGATCATTGGTCTGGCCACAGTAGCCTACATCCCGAA 20661
||| ||||||||||| || || ||| || | || |||| || |||||||| ||||
Sbjct 193578 CCACTGCGAACACCACATGGCGCCGTTCCTGGGCAAGGCCTGGGTCGCCTACATGCCGAC 193519
Query 20662 CGGGAAGATCGTCGGCCTGTCCAAGATCACGCGCTTGGTCGATGCCTTCGCC 20713
||| ||| |||| |||||||| ||| | ||||| ||||||| |||||||
Sbjct 193518 CGGCAAGGTCGTGGGCCTGTCGAAGCTGGCGCGCCTGGTCGAGATCTTCGCC 193467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 181084411675042
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |