Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2172 123 4e-23 >seq2172 Length=1301 Score = 123 bits (136), Expect = 4e-23 Identities = 344/525 (66%), Gaps = 2/525 (0%) Strand=Plus/Minus Query 161168 CCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCT 161227 || || ||||||||||| || | ||| ||||| ||||| || || |||||||| || Sbjct 1018 CCGGACGAGATCTACAATCTCGCGGCGCAGAGCCATGTCGCGGTGTCGTTCGAGGAGCCG 959 Query 161228 GAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTC 161287 ||||| || || | | ||||| |||||| | || | | ||||||| | || | Sbjct 958 GAATACACCGCCAATTCCGATGCGCTGGGACCGCTGCGCCTGCTGGAGGCGATCCGGATT 899 Query 161288 CTAGGTATG-ACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTT 161346 || || || | | || | || |||| ||||| || ||| || |||| || | Sbjct 898 CTCGGGCTGGAGCGCAAGACGCGGT-TCTATCAGGCGTCGACCTCCGAACTGTACGGCCT 840 Query 161347 GGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGT 161406 || || ||| || ||||| || || || || ||||| || || || || |||| || Sbjct 839 CGTGCAGGAGGTGCCGCAGAAGGAGACGACGCCGTTCTATCCGCGCTCGCCCTATGCGGT 780 Query 161407 AGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGC 161466 || || ||||| | || ||||| |||||| | ||| || || || | || Sbjct 779 CGCCAAGCTCTACGCCTACTGGATCACGGTGAACTATCGTGAGGCCTACGGCATCTATGC 720 Query 161467 CAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCG 161526 | | | || || || |||||||| || || || || || ||||| ||||| || || Sbjct 719 CTGCAACGGCATCCTGTTCAACCACGAATCCCCGGTGCGCGGCGAGACCTTCGTGACGCG 660 Query 161527 TAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGG 161586 ||||| || ||| || | || || | || || ||||| || || || || Sbjct 659 CAAGATCACGCGGGCGCTGGCGCGCATCAAGCTCGGCCTGCAGGACAAGCTCTATCTCGG 600 Query 161587 TAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTT 161646 || || || | | || || ||||| || || |||||||| ||| |||| | Sbjct 599 CAACCTCAATGCCCGCCGCGACTGGGGCCACGCCCGCGACTATGTCGAGATGCAGTGGCT 540 Query 161647 GATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGG 161691 |||| | || ||||| | || || ||||||||||| ||||| || Sbjct 539 GATGCTGCAGCAGGACGCCCCCGAGGACTATGTGATCGCCACCGG 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729792199876920