Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_026927.1
Length=228143
Score E
Sequences producing significant alignments: (Bits) Value
seq2172 123 4e-23
>seq2172
Length=1301
Score = 123 bits (136), Expect = 4e-23
Identities = 344/525 (66%), Gaps = 2/525 (0%)
Strand=Plus/Minus
Query 161168 CCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCT 161227
|| || ||||||||||| || | ||| ||||| ||||| || || |||||||| ||
Sbjct 1018 CCGGACGAGATCTACAATCTCGCGGCGCAGAGCCATGTCGCGGTGTCGTTCGAGGAGCCG 959
Query 161228 GAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTC 161287
||||| || || | | ||||| |||||| | || | | ||||||| | || |
Sbjct 958 GAATACACCGCCAATTCCGATGCGCTGGGACCGCTGCGCCTGCTGGAGGCGATCCGGATT 899
Query 161288 CTAGGTATG-ACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTT 161346
|| || || | | || | || |||| ||||| || ||| || |||| || |
Sbjct 898 CTCGGGCTGGAGCGCAAGACGCGGT-TCTATCAGGCGTCGACCTCCGAACTGTACGGCCT 840
Query 161347 GGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGT 161406
|| || ||| || ||||| || || || || ||||| || || || || |||| ||
Sbjct 839 CGTGCAGGAGGTGCCGCAGAAGGAGACGACGCCGTTCTATCCGCGCTCGCCCTATGCGGT 780
Query 161407 AGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGC 161466
|| || ||||| | || ||||| |||||| | ||| || || || | ||
Sbjct 779 CGCCAAGCTCTACGCCTACTGGATCACGGTGAACTATCGTGAGGCCTACGGCATCTATGC 720
Query 161467 CAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCG 161526
| | | || || || |||||||| || || || || || ||||| ||||| || ||
Sbjct 719 CTGCAACGGCATCCTGTTCAACCACGAATCCCCGGTGCGCGGCGAGACCTTCGTGACGCG 660
Query 161527 TAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGG 161586
||||| || ||| || | || || | || || ||||| || || || ||
Sbjct 659 CAAGATCACGCGGGCGCTGGCGCGCATCAAGCTCGGCCTGCAGGACAAGCTCTATCTCGG 600
Query 161587 TAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTT 161646
|| || || | | || || ||||| || || |||||||| ||| |||| |
Sbjct 599 CAACCTCAATGCCCGCCGCGACTGGGGCCACGCCCGCGACTATGTCGAGATGCAGTGGCT 540
Query 161647 GATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGG 161691
|||| | || ||||| | || || ||||||||||| ||||| ||
Sbjct 539 GATGCTGCAGCAGGACGCCCCCGAGGACTATGTGATCGCCACCGG 495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729792199876920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |