Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq9026 86.0 8e-12 seq7823 86.0 8e-12 seq1205 86.0 8e-12 seq7041 82.4 9e-11 >seq9026 Length=54586 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 18754 TGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAA 18813 || || |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| | Sbjct 48352 TGCGGATGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 48411 Query 18814 GTCCCATCAATCCCG 18828 | ||| ||| || || Sbjct 48412 GCCCCGTCATTCGCG 48426 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18757 GGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAGTC 18816 || |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| || | Sbjct 48500 GGATGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCC 48559 Query 18817 CCATCAATCCCG 18828 || ||| || || Sbjct 48560 CCGTCATTCGCG 48571 >seq7823 Length=199163 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18757 GGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAGTC 18816 || |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| || | Sbjct 195850 GGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCC 195909 Query 18817 CCATCAATCCCG 18828 || ||| || || Sbjct 195910 CCGTCACTCGCG 195921 >seq1205 Length=48877 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 18757 GGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAGTC 18816 || |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| || | Sbjct 17288 GGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCC 17229 Query 18817 CCATCAATCCCG 18828 || ||| || || Sbjct 17228 CCGTCACTCGCG 17217 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 18749 CCGTATGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGG 18808 ||| | | || |||||||||||||||||||||||| ||||||||||| ||| |||| || Sbjct 17453 CCGAACGCGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCTGG 17394 Query 18809 TTCAAGTCCCATCAATCCCG 18828 ||| || ||| ||| || || Sbjct 17393 TTCGAGCCCCGTCACTCGCG 17374 >seq7041 Length=191181 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 154265 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGAGTCCAACC 154324 ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| | Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTGCA 50832 Query 154325 TGAGTCGCCA 154334 | ||||||| Sbjct 50833 GGGGTCGCCA 50842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605895526267920