Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq9026 86.0 8e-12
seq7823 86.0 8e-12
seq1205 86.0 8e-12
seq7041 82.4 9e-11
>seq9026
Length=54586
Score = 86.0 bits (94), Expect = 8e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 18754 TGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAA 18813
|| || |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| |
Sbjct 48352 TGCGGATGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 48411
Query 18814 GTCCCATCAATCCCG 18828
| ||| ||| || ||
Sbjct 48412 GCCCCGTCATTCGCG 48426
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 18757 GGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAGTC 18816
|| |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| || |
Sbjct 48500 GGATGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCC 48559
Query 18817 CCATCAATCCCG 18828
|| ||| || ||
Sbjct 48560 CCGTCATTCGCG 48571
>seq7823
Length=199163
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 18757 GGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAGTC 18816
|| |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| || |
Sbjct 195850 GGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCC 195909
Query 18817 CCATCAATCCCG 18828
|| ||| || ||
Sbjct 195910 CCGTCACTCGCG 195921
>seq1205
Length=48877
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 18757 GGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAGTC 18816
|| |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| || |
Sbjct 17288 GGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCC 17229
Query 18817 CCATCAATCCCG 18828
|| ||| || ||
Sbjct 17228 CCGTCACTCGCG 17217
Score = 82.4 bits (90), Expect = 9e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 18749 CCGTATGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGG 18808
||| | | || |||||||||||||||||||||||| ||||||||||| ||| |||| ||
Sbjct 17453 CCGAACGCGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCTGG 17394
Query 18809 TTCAAGTCCCATCAATCCCG 18828
||| || ||| ||| || ||
Sbjct 17393 TTCGAGCCCCGTCACTCGCG 17374
>seq7041
Length=191181
Score = 82.4 bits (90), Expect = 9e-11
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 154265 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGAGTCCAACC 154324
||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTGCA 50832
Query 154325 TGAGTCGCCA 154334
| |||||||
Sbjct 50833 GGGGTCGCCA 50842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605895526267920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |