Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027016.1
Length=226084
Score E
Sequences producing significant alignments: (Bits) Value
seq6590 100 4e-16
seq9575 89.7 7e-13
>seq6590
Length=8745084
Score = 100 bits (110), Expect = 4e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055
|||| ||| |||| || | || ||||| || ||||| || | | || | ||| | |
Sbjct 4159150 AGATGATTAACGGAGAGATGTATCCTCCCACTGTCAAAGATACTCAGGTTGAAATGATCT 4159209
Query 214056 ACGAACCCAGCGTTCCCGAAAAGTT-ACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114
|| || |||| ||| | || | |||| || |||| | ||| | ||||| ||
Sbjct 4159210 ACCCGCCTCATATTCCTGAACACTTGAAGTTT-GCTGTGGGCCAGGAGGTCTTTGGTCTG 4159268
Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174
||||| ||| | ||| |||| |||| || |||||| | || || ||||| || || ||
Sbjct 4159269 GTGCCTGGTCTGATGATGTATGCCACCATTTGGCTGCGGGAACATAACAGAGTATGTGAT 4159328
Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223
|| || ||||||||||| || |||||| ||| || ||| |||||||||
Sbjct 4159329 GTACTTAAACAAGAGCATCCAGAATGGGGCGATGAGCAGTTGTTCCAGA 4159377
>seq9575
Length=4383032
Score = 89.7 bits (98), Expect = 7e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151
|||| | ||| ||||||| || | || || ||||| | ||||||| |||||||||
Sbjct 3945610 TGGGCCAGGAGGTGTTTGGGCTGCTTCCTGGGCTCATGCTCTACGCCACGATCTGGCTGC 3945669
Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211
| ||||||||| | || || ||| ||||||| |||||||| ||| ||||||||
Sbjct 3945670 GTGAGCACAACCGCGTGTGTGACCTGCTGAAGGCTGAGCACCCCACCTGGGGCGACGAAC 3945729
Query 214212 AGCTGTTCCAGA 214223
|||| |||||||
Sbjct 3945730 AGCTCTTCCAGA 3945741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723204640136160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |