Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq6590 100 4e-16 seq9575 89.7 7e-13 >seq6590 Length=8745084 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| ||| |||| || | || ||||| || ||||| || | | || | ||| | | Sbjct 4159150 AGATGATTAACGGAGAGATGTATCCTCCCACTGTCAAAGATACTCAGGTTGAAATGATCT 4159209 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTT-ACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 || || |||| ||| | || | |||| || |||| | ||| | ||||| || Sbjct 4159210 ACCCGCCTCATATTCCTGAACACTTGAAGTTT-GCTGTGGGCCAGGAGGTCTTTGGTCTG 4159268 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 ||||| ||| | ||| |||| |||| || |||||| | || || ||||| || || || Sbjct 4159269 GTGCCTGGTCTGATGATGTATGCCACCATTTGGCTGCGGGAACATAACAGAGTATGTGAT 4159328 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 || || ||||||||||| || |||||| ||| || ||| ||||||||| Sbjct 4159329 GTACTTAAACAAGAGCATCCAGAATGGGGCGATGAGCAGTTGTTCCAGA 4159377 >seq9575 Length=4383032 Score = 89.7 bits (98), Expect = 7e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| | ||| ||||||| || | || || ||||| | ||||||| ||||||||| Sbjct 3945610 TGGGCCAGGAGGTGTTTGGGCTGCTTCCTGGGCTCATGCTCTACGCCACGATCTGGCTGC 3945669 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 | ||||||||| | || || ||| ||||||| |||||||| ||| |||||||| Sbjct 3945670 GTGAGCACAACCGCGTGTGTGACCTGCTGAAGGCTGAGCACCCCACCTGGGGCGACGAAC 3945729 Query 214212 AGCTGTTCCAGA 214223 |||| ||||||| Sbjct 3945730 AGCTCTTCCAGA 3945741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723204640136160