Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq9026 86.0 8e-12 seq7823 86.0 8e-12 seq1205 86.0 8e-12 >seq9026 Length=54586 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 18907 TGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAA 18966 || || |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| | Sbjct 48352 TGCGGATGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 48411 Query 18967 GTCCCATCAATCCCG 18981 | ||| ||| || || Sbjct 48412 GCCCCGTCATTCGCG 48426 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18910 GGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAGTC 18969 || |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| || | Sbjct 48500 GGATGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCC 48559 Query 18970 CCATCAATCCCG 18981 || ||| || || Sbjct 48560 CCGTCATTCGCG 48571 >seq7823 Length=199163 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18910 GGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAGTC 18969 || |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| || | Sbjct 195850 GGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCC 195909 Query 18970 CCATCAATCCCG 18981 || ||| || || Sbjct 195910 CCGTCACTCGCG 195921 >seq1205 Length=48877 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 18910 GGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAGTC 18969 || |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| || | Sbjct 17288 GGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCC 17229 Query 18970 CCATCAATCCCG 18981 || ||| || || Sbjct 17228 CCGTCACTCGCG 17217 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 18902 CCGTATGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGG 18961 ||| | | || |||||||||||||||||||||||| ||||||||||| ||| |||| || Sbjct 17453 CCGAACGCGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCTGG 17394 Query 18962 TTCAAGTCCCATCAATCCCG 18981 ||| || ||| ||| || || Sbjct 17393 TTCGAGCCCCGTCACTCGCG 17374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610214713081920