Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq7053 113 6e-20 seq9470 98.7 1e-15 seq9639 89.7 6e-13 seq6415 87.8 2e-12 >seq7053 Length=464797 Score = 113 bits (124), Expect = 6e-20 Identities = 196/276 (71%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 176401 CCTGATCGAAGTGATTGTTATAGATGTGGGTATCACCAAG-GT-TGC-CGATCAGTTCCC 176457 |||| ||||| |||||| |||||| || | ||||| || || || ||| | | || Sbjct 70252 CCTGCTCGAAATGATTGGCATAGATATGCGCGTCACCCAGCGTATGAACGA--AATCACC 70309 Query 176458 CGACTTCCAAGCCGCATTCCAGCGCGATCAGATGTGTCAGGAGTGCGTAAGAGGCGATGT 176517 || |||| | ||| || |||| | || ||||||| || || || |||||||||| Sbjct 70310 CGGCTTC-AGGCCCGTGACCTGCGCCACCATCAGTGTCAGCAGCGCATAGGAGGCGATGT 70368 Query 176518 TGAATGGAAGCCCCAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTCC 176577 |||| || | || | ||||| || | || ||||||| |||||||||| || | Sbjct 70369 TGAACGGCACGCCGAGGAAGATATCGGCAGAGCGCTGATAGAGCTGGCAGGACAGCTTTC 70428 Query 176578 CGTTGCGGACATAGAACTGGAAACCGTAGTGACACGGCGGCAAAGCCATTAGATCGACC- 176636 | | | |||||||||||||| | ||||||| |||||||| |||||| || ||| Sbjct 70429 CATCGGAAACATAGAACTGGAACAGGCAGTGACAGGGCGGCAACGCCATTTCGTCCACCA 70488 Query 176637 GCCCCGACATTCCAAGCCGAGACCATATGACGACGG 176672 || ||| ||||| ||||| || || ||||||||| Sbjct 70489 GCGCCG-GGTTCCACGCCGAAACGATGTGACGACGG 70523 >seq9470 Length=127963 Score = 98.7 bits (108), Expect = 1e-15 Identities = 213/317 (67%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 176361 GTCGGCAAAGCCAACGGTTCGCGTTCAAGCTGTTCCTTCACCTGATCGAAGTGATTGTTA 176420 ||||| || | || || ||||| ||||| |||| |||| |||| || || | Sbjct 52576 GTCGGGAAGGGCAGGGGCTCGCGGGAGAGCTGCAGCTTCGCCTGCTCGACATGGTTCAGA 52635 Query 176421 TAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGACTTCCAAGCCGCATTCCAGC 176480 |||| ||||| || || ||| || | | || ||| | || |||| || | Sbjct 52636 TAGAGGTGGGCGTCGCCCAGGGTGTGCACGAACTCGCCGGGCTGCAGGCCGGTGGCCTGG 52695 Query 176481 GCGATCAGATGTGTCAGGAGTGCGTAAGAGGCGATGTTGAATGGAAGCCCCAAGAAGACG 176540 || ||| | ||||| || ||||| |||||||||||||| || | || | ||| | | Sbjct 52696 GCCGTCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAACAGG 52755 Query 176541 TCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTCCCGTTGCGGACATAGAACTGGAAA 176600 || | || ||||| | |||||||||||||| |||| || |||||||||| Sbjct 52756 TCGGCCGAGCGCTGGTAAAGCAGGCAGGACAGTTTTCCGTCCGCCACGAAGAACTGGAAC 52815 Query 176601 CCGTAGTGACACGGCGGCAAAGCCATTAGATCGAC--CGCCCCGACATTCCAAGCCGAGA 176658 | |||| |||||||||| ||||| ||||| || || | ||||| ||||||| Sbjct 52816 AGGCAGTGGCACGGCGGCAGGGCCATGTCGTCGACGTCGGCCGG--GTTCCAGGCCGAGA 52873 Query 176659 CCATATGACGACGGCTG 176675 | || || || |||||| Sbjct 52874 CGATGTGGCGGCGGCTG 52890 >seq9639 Length=103419 Score = 89.7 bits (98), Expect = 6e-13 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 176358 AGTGTCGGCAAAGCCAACGGTTCGCGTTCAAGCTGTTCCTTCACCTGATCGAAGTGATTG 176417 || ||||| | || || || | ||| | ||||| || ||||| |||||| ||| Sbjct 3663 AGCGTCGGGTAGGCGAAGGGCTGGCGCGCCAGCTGGGTCTCGACCTGGGTGAAGTGGTTG 3722 Query 176418 TTATAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGACTTCCAAGCCGCATTCC 176477 || ||||||||| || || | | | ||| | || || || |||| | |||||| | Sbjct 3723 TTGTAGATGTGGCAGTCGCCGCCGGTCCAGATGAAGTCGCCCACCTCCAGGTCGCATTGC 3782 Query 176478 AGCGCGATCAGATGTGTCAGGAGTGCGTAAGAGGCGATGTTGAATGGAAGCCCCAAGAAG 176537 | || | || || ||||| || ||||| |||||||||||| |||| |||| |||| Sbjct 3783 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 3842 Query 176538 ACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTCCCGTTGCGGACATAGAACTGG 176597 | |||| || ||||| | | ||||| || || |||| | || ||||||||| Sbjct 3843 ATGTCCGCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 3902 Query 176598 AA 176599 || Sbjct 3903 AA 3904 >seq6415 Length=247467 Score = 87.8 bits (96), Expect = 2e-12 Identities = 216/325 (66%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 176352 ATCATCAGTGTCGGCAAAGCCAACGGTTCGCGTTCAAGCTGTTCCTTCACCTGATCGAAG 176411 ||| ||| ||||| || | | || ||||| |||||||| |||| |||| | Sbjct 53606 ATCGTCATGGTCGGGAACGGGTAGGGCTCGCGGGTCAGCTGTTCGCGGGCCTGGTCGAGG 53547 Query 176412 TGATTGTTATAGATGTGGGTATCACCAAGGTTGCCGATCAGTTC-CCCGACTTCCAAGCC 176470 || || ||||| ||||| || || | | || || | || |||| || ||| ||| Sbjct 53546 TGGTTCAGATAGAGGTGGGCGTCGCCGAAGGTGTGGACGAACTCGCCCGGCT-CCAGGCC 53488 Query 176471 GCATTCCAGCGCGATCAGATGTGTCAGGAGTGCGTAAGAGGCGATGTTGAATGGAAGCCC 176530 | || |||| || | ||||| || ||||| |||||||||||||| || | ||| Sbjct 53487 GACGACCTTGGCGACCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACCCC 53428 Query 176531 CAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTCCCGTTGCGGACATA 176590 ||||| ||||| || || |||| ||||| ||| || |||| ||| | Sbjct 53427 TAAGAACACGTCGGCGCTGCGTTGATAGAGCTGGCAGCTCAGCTTTCCGTCCGCGACGAA 53368 Query 176591 GAACTGGAAACCGTAGTGACACGGCGGCAAAGCCATTAGATCGACCGCCCCGACATTCCA 176650 ||||||||| | |||| || ||||||| ||||| ||||| | || ||||| Sbjct 53367 GAACTGGAACAGGCAGTGGCAGGGCGGCAGGGCCATGTCGTCGACATCGGCGGGGTTCCA 53308 Query 176651 AGCCGAGACCATATGACGACGGCTG 176675 |||| ||| || || || |||||| Sbjct 53307 GGCCGTGACGATGTGGCGGCGGCTG 53283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622797944000040