Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8995 428 6e-115 seq7661 125 1e-23 seq13960 123 3e-23 seq608 107 3e-18 seq12849 86.0 9e-12 seq11415 86.0 9e-12 >seq8995 Length=8301158 Score = 428 bits (474), Expect = 6e-115 Identities = 658/936 (70%), Gaps = 12/936 (1%) Strand=Plus/Plus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 39327 ||| ||||| |||| || | ||| ||| ||| | | |||||| ||||||||| | Sbjct 6971316 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTTGGATTTGACATCACTCCCATTCT 6971375 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 || | || | || | ||||| || || ||||| || || |||| ||| |||||||| Sbjct 6971376 CTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 6971435 Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAA 39447 ||| || ||||||||||| | | || | || |||| || | || || | Sbjct 6971436 CATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAG 6971495 Query 39448 TCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 39507 ||||||||| || || || ||||| ||||||| |||||||| || ||||| || Sbjct 6971496 TCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 6971555 Query 39508 AACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGA 39567 || || || |||||||| || ||||| | ||| || || || | ||||| Sbjct 6971556 CACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTC 6971615 Query 39568 TGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTC 39627 ||||| || | ||| ||||| | ||||| ||||| | ||||| ||||| Sbjct 6971616 CTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAAGTC 6971675 Query 39628 ACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAG 39687 ||| || | ||||||||||| ||||| | ||| || ||||| ||||| |||||||| || Sbjct 6971676 ACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAG 6971735 Query 39688 ACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTAC 39747 || || || |||||||| ||||| | |||||||| || ||||||||||||||||| || Sbjct 6971736 TCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 6971795 Query 39748 TGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT-TATGTATCCACTTCTGTG 39806 ||| ||||| || || | | ||||| || |||| | | | ||| ||| | | | | Sbjct 6971796 TGCAGCAAAGGCTACCACACGTTCTCCATA---TGTAGCTTCTTTGTCCCCAGTCCAGCG 6971852 Query 39807 C-----CCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | |||||| || |||||||| ||||||||||| || || || ||||| |||||| | Sbjct 6971853 CAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAA 6971912 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 | |||| | |||||||| || || || || | |||||||||||||| ||||| Sbjct 6971913 TTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATG 6971972 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 |||||||| || || || || || || || ||||| || || ||||| || || || Sbjct 6971973 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTC 6972032 Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 | | ||| | ||| |||| |||||||| ||||| |||||||| || ||||| || || Sbjct 6972033 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGC 6972092 Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 || ||||| |||||||||| | || || || ||| | ||||| | || || Sbjct 6972093 CAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTC 6972152 Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161 || || | || || || |||||||||||||| || ||||| || || || ||||| | Sbjct 6972153 CTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTG 6972212 Query 40162 CCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||| |||||| | |||| || ||||| || ||||| Sbjct 6972213 CCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248 Score = 268 bits (296), Expect = 1e-66 Identities = 394/556 (71%), Gaps = 9/556 (2%) Strand=Plus/Plus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||| ||||||||| | || || || || || | ||||| || || ||||| || || Sbjct 6968490 TGACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCC 6968549 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAA 39429 |||| ||| ||||||||||| || ||||||||||| | | || | || |||| Sbjct 6968550 CTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAA 6968609 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 || | || || | ||||||||| || || || ||||| ||||||| || Sbjct 6968610 GCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCA 6968669 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 |||||| || ||||| || || || || |||||||| || ||||| | ||| || || Sbjct 6968670 ATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAAC 6968729 Query 39550 GGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAA 39609 || | ||||| ||||| || | ||| ||||| | ||||| || Sbjct 6968730 TGCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAA 6968789 Query 39610 CATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAA 39669 ||| | ||||| |||||||| || | ||||||||||| ||||| | ||| || ||||| Sbjct 6968790 CATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAA 6968849 Query 39670 TGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGA 39729 ||||| |||||||| || || || || |||||||| ||||| | |||||||| || || Sbjct 6968850 CGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGA 6968909 Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT- 39788 ||||||||||||||| ||||| ||||| || || | | ||||| || |||| | | Sbjct 6968910 AAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATA---TGTAGCTTC 6968966 Query 39789 TATGTATCCACTTCTG-----TGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 | ||| ||| | | | |||||||| || |||||||| ||||||||||| || || Sbjct 6968967 TTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTC 6969026 Query 39844 TATAGCATTAAAGAGA 39859 || ||||| |||||| Sbjct 6969027 AATGGCATTGAAGAGA 6969042 >seq7661 Length=1898141 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| | Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480 Query 39759 CAAC 39762 | || Sbjct 818479 CTAC 818476 >seq13960 Length=3940437 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 2049918 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 2049977 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 2049978 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 2050037 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 2050038 TTTCTTATACCAT 2050050 >seq608 Length=3558542 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | || || ||||| |||||||||||||| || || | || || Sbjct 2088600 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 2088541 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 2088540 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 2088481 Query 39761 AC 39762 || Sbjct 2088480 AC 2088479 >seq12849 Length=3269951 Score = 86.0 bits (94), Expect = 9e-12 Identities = 171/252 (68%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406 ||| || || ||||| ||| | || || || || |||||| | || ||||| | Sbjct 3072264 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTTAAACTTCCTC 3072205 Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466 | || || ||| |||| | || | | || ||||| || ||| ||| ||| | || | Sbjct 3072204 TATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTTGATCACCCTTTTTGAC 3072145 Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526 || ||| || ||| ||| ||| | ||| | || |||| ||| || ||||||||||| Sbjct 3072144 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 3072085 Query 37527 ATCGATTACTCCGCCTCCTACATCAATACCTTTTAGAGACAAACCCGATCTAGGAGCTAT 37586 ||| || || | |||||||||| || | || | ||| || || | |||||| | Sbjct 3072084 ATCTATGACACAAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCCAC 3072026 Query 37587 TCTTCCATAACA 37598 ||||||||| || Sbjct 3072025 TCTTCCATAGCA 3072014 >seq11415 Length=1221423 Score = 86.0 bits (94), Expect = 9e-12 Identities = 171/252 (68%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406 ||| || || ||||| ||| | || || || || |||||| | | ||||| | Sbjct 353789 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTAAAACTTCCTC 353730 Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466 | || || ||| |||| ||| | | || ||||| || |||| ||| ||| | || | Sbjct 353729 TATTTCTGGGTAAAATATCCGTGCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 353670 Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526 || || || ||| ||| ||| | ||| | || |||| ||| || ||||||||||| Sbjct 353669 TTCCAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 353610 Query 37527 ATCGATTACTCCGCCTCCTACATCAATACCTTTTAGAGACAAACCCGATCTAGGAGCTAT 37586 ||| || || || |||||||||| || | || | ||| || || | |||||| | Sbjct 353609 ATCTATGACACCAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCCAC 353551 Query 37587 TCTTCCATAACA 37598 ||||||||| || Sbjct 353550 TCTTCCATAGCA 353539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686779498004760