Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 428 6e-115
seq7661 125 1e-23
seq13960 123 3e-23
seq608 107 3e-18
seq12849 86.0 9e-12
seq11415 86.0 9e-12
>seq8995
Length=8301158
Score = 428 bits (474), Expect = 6e-115
Identities = 658/936 (70%), Gaps = 12/936 (1%)
Strand=Plus/Plus
Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 39327
||| ||||| |||| || | ||| ||| ||| | | |||||| ||||||||| |
Sbjct 6971316 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTTGGATTTGACATCACTCCCATTCT 6971375
Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387
|| | || | || | ||||| || || ||||| || || |||| ||| ||||||||
Sbjct 6971376 CTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 6971435
Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAA 39447
||| || ||||||||||| | | || | || |||| || | || || |
Sbjct 6971436 CATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAG 6971495
Query 39448 TCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 39507
||||||||| || || || ||||| ||||||| |||||||| || ||||| ||
Sbjct 6971496 TCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 6971555
Query 39508 AACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGA 39567
|| || || |||||||| || ||||| | ||| || || || | |||||
Sbjct 6971556 CACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTC 6971615
Query 39568 TGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTC 39627
||||| || | ||| ||||| | ||||| ||||| | ||||| |||||
Sbjct 6971616 CTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAAGTC 6971675
Query 39628 ACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAG 39687
||| || | ||||||||||| ||||| | ||| || ||||| ||||| |||||||| ||
Sbjct 6971676 ACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAG 6971735
Query 39688 ACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTAC 39747
|| || || |||||||| ||||| | |||||||| || ||||||||||||||||| ||
Sbjct 6971736 TCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 6971795
Query 39748 TGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT-TATGTATCCACTTCTGTG 39806
||| ||||| || || | | ||||| || |||| | | | ||| ||| | | | |
Sbjct 6971796 TGCAGCAAAGGCTACCACACGTTCTCCATA---TGTAGCTTCTTTGTCCCCAGTCCAGCG 6971852
Query 39807 C-----CCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861
| |||||| || |||||||| ||||||||||| || || || ||||| |||||| |
Sbjct 6971853 CAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAA 6971912
Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921
| |||| | |||||||| || || || || | |||||||||||||| |||||
Sbjct 6971913 TTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATG 6971972
Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981
|||||||| || || || || || || || ||||| || || ||||| || || ||
Sbjct 6971973 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTC 6972032
Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041
| | ||| | ||| |||| |||||||| ||||| |||||||| || ||||| || ||
Sbjct 6972033 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGC 6972092
Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101
|| ||||| |||||||||| | || || || ||| | ||||| | || ||
Sbjct 6972093 CAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTC 6972152
Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161
|| || | || || || |||||||||||||| || ||||| || || || ||||| |
Sbjct 6972153 CTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTG 6972212
Query 40162 CCATATATCACGATATTGTATTGGAAAAATAACAAA 40197
||| |||||| | |||| || ||||| || |||||
Sbjct 6972213 CCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248
Score = 268 bits (296), Expect = 1e-66
Identities = 394/556 (71%), Gaps = 9/556 (2%)
Strand=Plus/Plus
Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369
|||||| ||||||||| | || || || || || | ||||| || || ||||| || ||
Sbjct 6968490 TGACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCC 6968549
Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAA 39429
|||| ||| ||||||||||| || ||||||||||| | | || | || ||||
Sbjct 6968550 CTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAA 6968609
Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489
|| | || || | ||||||||| || || || ||||| ||||||| ||
Sbjct 6968610 GCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCA 6968669
Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549
|||||| || ||||| || || || || |||||||| || ||||| | ||| || ||
Sbjct 6968670 ATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAAC 6968729
Query 39550 GGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAA 39609
|| | ||||| ||||| || | ||| ||||| | ||||| ||
Sbjct 6968730 TGCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAA 6968789
Query 39610 CATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAA 39669
||| | ||||| |||||||| || | ||||||||||| ||||| | ||| || |||||
Sbjct 6968790 CATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAA 6968849
Query 39670 TGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGA 39729
||||| |||||||| || || || || |||||||| ||||| | |||||||| || ||
Sbjct 6968850 CGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGA 6968909
Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT- 39788
||||||||||||||| ||||| ||||| || || | | ||||| || |||| | |
Sbjct 6968910 AAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATA---TGTAGCTTC 6968966
Query 39789 TATGTATCCACTTCTG-----TGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843
| ||| ||| | | | |||||||| || |||||||| ||||||||||| || ||
Sbjct 6968967 TTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTC 6969026
Query 39844 TATAGCATTAAAGAGA 39859
|| ||||| ||||||
Sbjct 6969027 AATGGCATTGAAGAGA 6969042
>seq7661
Length=1898141
Score = 125 bits (138), Expect = 1e-23
Identities = 102/124 (82%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || |
Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| |
Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480
Query 39759 CAAC 39762
| ||
Sbjct 818479 CTAC 818476
>seq13960
Length=3940437
Score = 123 bits (136), Expect = 3e-23
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || || ||||| |||||||| || ||||||||||| ||||| | ||
Sbjct 2049918 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 2049977
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 2049978 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 2050037
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 2050038 TTTCTTATACCAT 2050050
>seq608
Length=3558542
Score = 107 bits (118), Expect = 3e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | || || ||||| |||||||||||||| || || | || ||
Sbjct 2088600 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 2088541
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| ||
Sbjct 2088540 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 2088481
Query 39761 AC 39762
||
Sbjct 2088480 AC 2088479
>seq12849
Length=3269951
Score = 86.0 bits (94), Expect = 9e-12
Identities = 171/252 (68%), Gaps = 1/252 (0%)
Strand=Plus/Minus
Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406
||| || || ||||| ||| | || || || || |||||| | || ||||| |
Sbjct 3072264 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTTAAACTTCCTC 3072205
Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466
| || || ||| |||| | || | | || ||||| || ||| ||| ||| | || |
Sbjct 3072204 TATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTTGATCACCCTTTTTGAC 3072145
Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526
|| ||| || ||| ||| ||| | ||| | || |||| ||| || |||||||||||
Sbjct 3072144 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 3072085
Query 37527 ATCGATTACTCCGCCTCCTACATCAATACCTTTTAGAGACAAACCCGATCTAGGAGCTAT 37586
||| || || | |||||||||| || | || | ||| || || | |||||| |
Sbjct 3072084 ATCTATGACACAAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCCAC 3072026
Query 37587 TCTTCCATAACA 37598
||||||||| ||
Sbjct 3072025 TCTTCCATAGCA 3072014
>seq11415
Length=1221423
Score = 86.0 bits (94), Expect = 9e-12
Identities = 171/252 (68%), Gaps = 1/252 (0%)
Strand=Plus/Minus
Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406
||| || || ||||| ||| | || || || || |||||| | | ||||| |
Sbjct 353789 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTAAAACTTCCTC 353730
Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466
| || || ||| |||| ||| | | || ||||| || |||| ||| ||| | || |
Sbjct 353729 TATTTCTGGGTAAAATATCCGTGCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 353670
Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526
|| || || ||| ||| ||| | ||| | || |||| ||| || |||||||||||
Sbjct 353669 TTCCAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 353610
Query 37527 ATCGATTACTCCGCCTCCTACATCAATACCTTTTAGAGACAAACCCGATCTAGGAGCTAT 37586
||| || || || |||||||||| || | || | ||| || || | |||||| |
Sbjct 353609 ATCTATGACACCAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCCAC 353551
Query 37587 TCTTCCATAACA 37598
||||||||| ||
Sbjct 353550 TCTTCCATAGCA 353539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686779498004760
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