Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027296.1 Length=53721 Score E Sequences producing significant alignments: (Bits) Value seq11218 239 2e-58 >seq11218 Length=18448 Score = 239 bits (264), Expect = 2e-58 Identities = 401/572 (70%), Gaps = 10/572 (2%) Strand=Plus/Minus Query 18562 TCGGCCCAATTTGAGGGCTATGGGGCGACGCTCGAGACTATCGAGGGGAGCGCCGACAAG 18621 ||||| || ||||| ||||||| |||||| | || || |||||||| |||||||| || Sbjct 16091 TCGGCTCAGTTTGAAGGCTATGCCGCGACGTTGGAAACGATCGAGGGCAGCGCCGA--AG 16034 Query 18622 G---CGAAGAAGTCCCTTGCGTGGATCACCGAGTTCGCGAAAACAACCCCTTACGACGTA 18678 | |||| ||| | || |||||| |||| ||||| || | ||| || || ||||| Sbjct 16033 GTGCCGAAAAAG-CTCTCAACTGGATCTCCGACTTCGCCAAGAAAACGCCGTATGACGTG 15975 Query 18679 GCAGGGGTGACCGAGGCCTTTGTGAAGTTGAAGGCATACGGGTTGGACCCAATGGACGGC 18738 || | | |||| ||||| || || ||| || || ||||| ||||||||| | |||| Sbjct 15974 GCCGAGTTGACAGAGGCATTCGTCAAGCTGCGCGCTTACGGCATGGACCCAACG-ACGGG 15916 Query 18739 AGT-CTTGTCGCCCTCGGTGACGCCGCGTCCGGCATGGGCAAAACGCTCAACCAAGCGGT 18797 | | || | | |||||| ||||| | || | ||||||||| | | || ||||| Sbjct 15915 ACTTCTGGAAGACCTCGGCAACGCCTCCTCGGCCATGGGCAAGGGCTTGATGCAGGCGGT 15856 Query 18798 CGAGGCGATGGCGGATGCCGTCACAGGCGAGAACGAGCGCCTGAAAGAATTTGGCATCAC 18857 ||| ||| || || ||| ||| ||||| || |||||||| |||||||| ||| | Sbjct 15855 CGAAATGATCGCAGACGCCAGCACGGGCGAATTTGAACGCCTGAAGGAATTTGGTATC-C 15797 Query 18858 GACCAAGGT-GGCAGGGGATCAAATCACCTACACTTGGCGACAGAACGGCAAAGAGATGT 18916 | || ||| || || || | |||| | | ||| |||||||||| || ||| Sbjct 15796 GCGCATCTCAGGCCGGTGACGAAGTGACCTTCTCGTGGACCGAGAACGGCAAGCAGTTGT 15737 Query 18917 CGAAGACGCTCAAGAAGAACGGCGTCGAGATCGCCAAGTTCTTGCGCGACAACTTCGAAG 18976 |||||||| |||| |||| | | |||||| | || ||| | ||||| |||| Sbjct 15736 CGAAGACGGTCAACAAGACCTCTGATGAGATCACAAAATTCATTCGCGATCGGTTCGGCT 15677 Query 18977 GCCGCTTTGCCGGCGCAATGATCCGCCAGTCGAAGACGTGGAACGGGATGATCTCGAACC 19036 |||||| | || || |||||||||||||| | || ||||| || ||||| |||| Sbjct 15676 CTCGCTTTTCAGGAGCCATGATCCGCCAGTCAAGAACCTGGAATGGCATGATGAGCAACC 15617 Query 19037 TCGGCGACACCTGGACAGGCTTCCAACGAATGATCGGCGACGCCGGTTTCTTCGAAGCCG 19096 | ||||||| ||||| || ||||| || ||||| || ||| ||||||| ||| Sbjct 15616 TGGGCGACAGCTGGATAGATTTCCAGCGTCGTATCGGGCGCGGCGGGGTCTTCGACACCG 15557 Query 19097 TCAAGGGGCAGCTGGGTCGCCTCATGGACTAC 19128 ||||| || ||||| ||| ||||||||| Sbjct 15556 CGAAGGGCCATCTGGGCGACCTTATGGACTAC 15525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171754880332714