Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027296.1
Length=53721
Score E
Sequences producing significant alignments: (Bits) Value
seq11218 239 2e-58
>seq11218
Length=18448
Score = 239 bits (264), Expect = 2e-58
Identities = 401/572 (70%), Gaps = 10/572 (2%)
Strand=Plus/Minus
Query 18562 TCGGCCCAATTTGAGGGCTATGGGGCGACGCTCGAGACTATCGAGGGGAGCGCCGACAAG 18621
||||| || ||||| ||||||| |||||| | || || |||||||| |||||||| ||
Sbjct 16091 TCGGCTCAGTTTGAAGGCTATGCCGCGACGTTGGAAACGATCGAGGGCAGCGCCGA--AG 16034
Query 18622 G---CGAAGAAGTCCCTTGCGTGGATCACCGAGTTCGCGAAAACAACCCCTTACGACGTA 18678
| |||| ||| | || |||||| |||| ||||| || | ||| || || |||||
Sbjct 16033 GTGCCGAAAAAG-CTCTCAACTGGATCTCCGACTTCGCCAAGAAAACGCCGTATGACGTG 15975
Query 18679 GCAGGGGTGACCGAGGCCTTTGTGAAGTTGAAGGCATACGGGTTGGACCCAATGGACGGC 18738
|| | | |||| ||||| || || ||| || || ||||| ||||||||| | ||||
Sbjct 15974 GCCGAGTTGACAGAGGCATTCGTCAAGCTGCGCGCTTACGGCATGGACCCAACG-ACGGG 15916
Query 18739 AGT-CTTGTCGCCCTCGGTGACGCCGCGTCCGGCATGGGCAAAACGCTCAACCAAGCGGT 18797
| | || | | |||||| ||||| | || | ||||||||| | | || |||||
Sbjct 15915 ACTTCTGGAAGACCTCGGCAACGCCTCCTCGGCCATGGGCAAGGGCTTGATGCAGGCGGT 15856
Query 18798 CGAGGCGATGGCGGATGCCGTCACAGGCGAGAACGAGCGCCTGAAAGAATTTGGCATCAC 18857
||| ||| || || ||| ||| ||||| || |||||||| |||||||| ||| |
Sbjct 15855 CGAAATGATCGCAGACGCCAGCACGGGCGAATTTGAACGCCTGAAGGAATTTGGTATC-C 15797
Query 18858 GACCAAGGT-GGCAGGGGATCAAATCACCTACACTTGGCGACAGAACGGCAAAGAGATGT 18916
| || ||| || || || | |||| | | ||| |||||||||| || |||
Sbjct 15796 GCGCATCTCAGGCCGGTGACGAAGTGACCTTCTCGTGGACCGAGAACGGCAAGCAGTTGT 15737
Query 18917 CGAAGACGCTCAAGAAGAACGGCGTCGAGATCGCCAAGTTCTTGCGCGACAACTTCGAAG 18976
|||||||| |||| |||| | | |||||| | || ||| | ||||| ||||
Sbjct 15736 CGAAGACGGTCAACAAGACCTCTGATGAGATCACAAAATTCATTCGCGATCGGTTCGGCT 15677
Query 18977 GCCGCTTTGCCGGCGCAATGATCCGCCAGTCGAAGACGTGGAACGGGATGATCTCGAACC 19036
|||||| | || || |||||||||||||| | || ||||| || ||||| ||||
Sbjct 15676 CTCGCTTTTCAGGAGCCATGATCCGCCAGTCAAGAACCTGGAATGGCATGATGAGCAACC 15617
Query 19037 TCGGCGACACCTGGACAGGCTTCCAACGAATGATCGGCGACGCCGGTTTCTTCGAAGCCG 19096
| ||||||| ||||| || ||||| || ||||| || ||| ||||||| |||
Sbjct 15616 TGGGCGACAGCTGGATAGATTTCCAGCGTCGTATCGGGCGCGGCGGGGTCTTCGACACCG 15557
Query 19097 TCAAGGGGCAGCTGGGTCGCCTCATGGACTAC 19128
||||| || ||||| ||| |||||||||
Sbjct 15556 CGAAGGGCCATCTGGGCGACCTTATGGACTAC 15525
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 171754880332714
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |