Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027332.1
Length=98170
Score E
Sequences producing significant alignments: (Bits) Value
seq8226 107 1e-18
seq8225 98.7 6e-16
seq6169 82.4 5e-11
>seq8226
Length=5263
Score = 107 bits (118), Expect = 1e-18
Identities = 151/209 (72%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 45336 GCTTATGACGATGGTGTTGGGGTTATAACTATTGGTTATGGCACAACTCGTTATCCAAAT 45395
|| |||||||||||||| || || || ||||| | |||||||| | ||||| |||
Sbjct 1189 GCCTATGACGATGGTGTGGGCATTTGGACCATTGGATTTGGCACAATTAAATATCCGAAT 1248
Query 45396 GGTCATAAAGTTCAATTAGGCGATACCTGCACTGAAAAACAGGCAGAACAGTA-CTTAGC 45454
||| || || ||| ||||| ||||||||| || |||||||| || ||| |
Sbjct 1249 GGTGTGCGTGTCAAAAAAGGGGATACATGCACTGAATCTCAAGCAGAACAATATCTTCG- 1307
Query 45455 CAATGATTTAGTCAAGTTTGAAAAGGCTGTTAATGAACTAGTAAAAGTCCCAGTCAATCA 45514
|||||||||||| |||||||| ||| | ||| | || ||||| ||| |||||||
Sbjct 1308 CAATGATTTAGTAGTATTTGAAAACGCTATCAATCGTTTGGTGAAAGTGCCACTCAATCA 1367
Query 45515 AAATCAATATGATGCACTTGTTAGCTTCA 45543
||| |||| ||||| |||||||||
Sbjct 1368 AAACCAATTCGATGC----TTTAGCTTCA 1392
>seq8225
Length=74308
Score = 98.7 bits (108), Expect = 6e-16
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 45336 GCTTATGACGATGGTGTTGGGGTTATAACTATTGGTTATGGCACAACTCGTTATCCAAAT 45395
|||||||||||||| ||||| ||| || ||||| | |||||||| | || || |||
Sbjct 60 GCTTATGACGATGGCGTTGGTGTTTGGACCATTGGATTTGGCACAATTAAATACCCGAAT 119
Query 45396 GGTCATAAAGTTCAATTAGGCGATACCTGCACTGAAAAACAGGCAGAACAGTA-CTTAGC 45454
||| ||| || ||||||| ||||||||| || |||||||| || ||| |
Sbjct 120 GGTGTACGTGTTAAAAAAGGCGATGTATGCACTGAATCTCAAGCAGAACAATATCTTCG- 178
Query 45455 CAATGATTTAGTCAAGTTTGAAAAGGCTGTTAATGAACTAGTAAAAGTCCCAGTCAATCA 45514
|||||||| || |||||||| ||| | ||| | | || ||||| || | |||||
Sbjct 179 TAATGATTTGGTTGTATTTGAAAACGCTATCAATCGATTGGTGAAAGTACCTCTTAATCA 238
Query 45515 AAATCAATATGATGCACTTGTTAGCTTCA 45543
||| |||| ||||| |||||||||
Sbjct 239 AAACCAATTCGATGC----TTTAGCTTCA 263
>seq6169
Length=202695
Score = 82.4 bits (90), Expect = 5e-11
Identities = 164/236 (69%), Gaps = 9/236 (4%)
Strand=Plus/Plus
Query 45336 GCTTATGACGATGGTGTTGGGGTTATAACTATTGGTTATGGCACAACTCGTTATCCAAAT 45395
|| |||||||||||||| || ||| ||||||||||||||||||||| | || |||
Sbjct 2894 GCGTATGACGATGGTGTAGGTGTTTGGACTATTGGTTATGGCACAACT-GCAAT--TAAT 2950
Query 45396 GGTCATAAAGTTCAATTAGGCGATACCTGCACTGAAAAACAGGCAGAACAGTACTTAGCC 45455
||| |||| | ||| ||||| ||||||| |||| || | ||| | ||
Sbjct 2951 GGTGTCGCAGTTAAGAAAGGTGATACTTGCACTGCTGAACAAGCTAAGTCCTACATGGCT 3010
Query 45456 AATGATTTAGTCAAGTTTGAAAAGGCTGTTAATGAACT--AGTAAAAGTCCCAGTCAATC 45513
| |||||| || |||||| ||||| ||| ||| || ||||| ||| | || |
Sbjct 3011 CAAGATTTAAAGAAATTTGAATCTGCTGTAAAT--ACTTCGGTTAAAGTTCCATTAAACC 3068
Query 45514 AAAATCAATATGATGCACTTGTTAGC-TTCACATACAATGTTGGAGTAGGTGCATT 45568
||||||| | ||||| ||| || | || || ||||| |||| ||||||||
Sbjct 3069 AAAATCAGTTCGATGC-TTTGGTATCATTGACTTACAACATTGGCACTGGTGCATT 3123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 313961567565569
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |