Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027332.1 Length=98170 Score E Sequences producing significant alignments: (Bits) Value seq8226 107 1e-18 seq8225 98.7 6e-16 seq6169 82.4 5e-11 >seq8226 Length=5263 Score = 107 bits (118), Expect = 1e-18 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 45336 GCTTATGACGATGGTGTTGGGGTTATAACTATTGGTTATGGCACAACTCGTTATCCAAAT 45395 || |||||||||||||| || || || ||||| | |||||||| | ||||| ||| Sbjct 1189 GCCTATGACGATGGTGTGGGCATTTGGACCATTGGATTTGGCACAATTAAATATCCGAAT 1248 Query 45396 GGTCATAAAGTTCAATTAGGCGATACCTGCACTGAAAAACAGGCAGAACAGTA-CTTAGC 45454 ||| || || ||| ||||| ||||||||| || |||||||| || ||| | Sbjct 1249 GGTGTGCGTGTCAAAAAAGGGGATACATGCACTGAATCTCAAGCAGAACAATATCTTCG- 1307 Query 45455 CAATGATTTAGTCAAGTTTGAAAAGGCTGTTAATGAACTAGTAAAAGTCCCAGTCAATCA 45514 |||||||||||| |||||||| ||| | ||| | || ||||| ||| ||||||| Sbjct 1308 CAATGATTTAGTAGTATTTGAAAACGCTATCAATCGTTTGGTGAAAGTGCCACTCAATCA 1367 Query 45515 AAATCAATATGATGCACTTGTTAGCTTCA 45543 ||| |||| ||||| ||||||||| Sbjct 1368 AAACCAATTCGATGC----TTTAGCTTCA 1392 >seq8225 Length=74308 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 45336 GCTTATGACGATGGTGTTGGGGTTATAACTATTGGTTATGGCACAACTCGTTATCCAAAT 45395 |||||||||||||| ||||| ||| || ||||| | |||||||| | || || ||| Sbjct 60 GCTTATGACGATGGCGTTGGTGTTTGGACCATTGGATTTGGCACAATTAAATACCCGAAT 119 Query 45396 GGTCATAAAGTTCAATTAGGCGATACCTGCACTGAAAAACAGGCAGAACAGTA-CTTAGC 45454 ||| ||| || ||||||| ||||||||| || |||||||| || ||| | Sbjct 120 GGTGTACGTGTTAAAAAAGGCGATGTATGCACTGAATCTCAAGCAGAACAATATCTTCG- 178 Query 45455 CAATGATTTAGTCAAGTTTGAAAAGGCTGTTAATGAACTAGTAAAAGTCCCAGTCAATCA 45514 |||||||| || |||||||| ||| | ||| | | || ||||| || | ||||| Sbjct 179 TAATGATTTGGTTGTATTTGAAAACGCTATCAATCGATTGGTGAAAGTACCTCTTAATCA 238 Query 45515 AAATCAATATGATGCACTTGTTAGCTTCA 45543 ||| |||| ||||| ||||||||| Sbjct 239 AAACCAATTCGATGC----TTTAGCTTCA 263 >seq6169 Length=202695 Score = 82.4 bits (90), Expect = 5e-11 Identities = 164/236 (69%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 45336 GCTTATGACGATGGTGTTGGGGTTATAACTATTGGTTATGGCACAACTCGTTATCCAAAT 45395 || |||||||||||||| || ||| ||||||||||||||||||||| | || ||| Sbjct 2894 GCGTATGACGATGGTGTAGGTGTTTGGACTATTGGTTATGGCACAACT-GCAAT--TAAT 2950 Query 45396 GGTCATAAAGTTCAATTAGGCGATACCTGCACTGAAAAACAGGCAGAACAGTACTTAGCC 45455 ||| |||| | ||| ||||| ||||||| |||| || | ||| | || Sbjct 2951 GGTGTCGCAGTTAAGAAAGGTGATACTTGCACTGCTGAACAAGCTAAGTCCTACATGGCT 3010 Query 45456 AATGATTTAGTCAAGTTTGAAAAGGCTGTTAATGAACT--AGTAAAAGTCCCAGTCAATC 45513 | |||||| || |||||| ||||| ||| ||| || ||||| ||| | || | Sbjct 3011 CAAGATTTAAAGAAATTTGAATCTGCTGTAAAT--ACTTCGGTTAAAGTTCCATTAAACC 3068 Query 45514 AAAATCAATATGATGCACTTGTTAGC-TTCACATACAATGTTGGAGTAGGTGCATT 45568 ||||||| | ||||| ||| || | || || ||||| |||| |||||||| Sbjct 3069 AAAATCAGTTCGATGC-TTTGGTATCATTGACTTACAACATTGGCACTGGTGCATT 3123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313961567565569