Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027334.1 Length=47800 Score E Sequences producing significant alignments: (Bits) Value seq11405 98.7 3e-16 seq6714 87.8 5e-13 >seq11405 Length=110570 Score = 98.7 bits (108), Expect = 3e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 31372 CCCCATTGCTTGAAGGTGAAGGCGACGCCAGCGTCGGCGCACTGGTCGCGAATGCCGCGA 31431 ||||| |||||||| ||||||| ||| || | ||||||||||||| | || | | Sbjct 75270 CCCCACTGCTTGAACATGAAGGCCGTGCCCACGGCCTCGCACTGGTCGCGCAGGCTGAGC 75329 Query 31432 GCCCAATCGGGATGCATCGGCCGGGCGCCGGATCCGCTCTCGCCGCCGGCGACAATCCAG 31491 ||||| ||||||||||| || || || |||| ||||||||||||||| ||| | |||| Sbjct 75330 GCCCAGTCGGGATGCATGGGACGCGCACCGGGGCCGCTCTCGCCGCCGACGATCACCCAG 75389 Query 31492 TC 31493 || Sbjct 75390 TC 75391 >seq6714 Length=1758414 Score = 87.8 bits (96), Expect = 5e-13 Identities = 362/566 (64%), Gaps = 34/566 (6%) Strand=Plus/Plus Query 22324 GGCGCTGCGCGGCGCCTCGAGGATATCGATCTGCCGCGCATTGGCCATCGGATCGGGGTC 22383 |||||| |||||||||| | ||||||||| |||| | ||| |||||| ||| Sbjct 1487249 GGCGCTTCGCGGCGCCTGAACGATATCGATTTGCCAAAGCTCGGCGCGAAGATCGGTGTC 1487308 Query 22384 GGTGAGGACGAAATCCACGCGGTGATCGACGTGGAAACCGGCAACGGCCAGGGGTTCGAT 22443 || |||||||||||||| || | |||| || || || | ||||| || |||||| Sbjct 1487309 GGCGAGGACGAAATCCATGCCTTCCTCGATGTCGAGACACG---TGGCCATGGTTTCGAT 1487365 Query 22444 TCCACCGGGCGCCCGAAGATGCTGTTCGAGCCGCACATCTTCTACCGCGAGGTGCCGCGG 22503 || || ||| || |||||||||||||| ||||||| ||| | || | | Sbjct 1487366 GAACTTGGCCGGCCGGTCATCCTGTTCGAGCCGCATGTCTTCTATCGCAACCTGTCTGGA 1487425 Query 22504 GCGTTGCGCGACAAGGCGATCGCCGCCGGTCTCGCCTATCCGTCCTGGCGCCGGAATTAT 22563 || || | |||| || || ||||| ||| | ||||| ||| || Sbjct 1487426 GCCACACGGGCTCAGGCCGTCAGGGCTGGTCTGGCCGCAAAGGCCTGG----GGAGCCAT 1487481 Query 22564 CC-----GGCCA--ACAGC------TATCCGCGCCTGGTCGAGGCCATGGCGATCGACGC 22610 || ||| | | ||| ||||| |||||| | ||| ||| |||||| | Sbjct 1487482 CCCCTATGGCAAGGAGAGCGACCAGTATCCACGCCTGAAGGCGGCGATGCTCATCGACTC 1487541 Query 22611 --------CACCGCCGCGCTGCGCTCGGCCTCCTGGGGGCTCGGCCAGGTGATGGGGTTC 22662 | |||||||||| ||||| || ||||| ||||||||||| | || Sbjct 1487542 ACCGATAACCCCGCCGCGCTCAAATCGGCATCGTGGGGCCTCGGCCAGGTTCTTGGCGAG 1487601 Query 22663 AACCATAAGATGGCCGGTTTCGACACCGTCCAGCAGATGG-TGCGGGCGTTCATGGAGGA 22721 ||| | |||||| || ||||| ||| |||| || ||| | ||| |||| Sbjct 1487602 AACTTCGAAGCGGCCGGCTTTCTGACCGTGCAGGCCATGGTTGACGGC-ATGATGCAGGA 1487660 Query 22722 TGAGGACCGGCATCTGGAGGCGATGGTCGCGTTCATCCAGTCGGCTGG--GCTCGATGAC 22779 ||||| || || || || | || |||||| ||| | | |||||| || Sbjct 1487661 CGAGGAAATCCAGCTCGAAGCCGCGATCAACTTCATC--ATCGACAAGAAGCTCGACGAT 1487718 Query 22780 GAAATCCGCCGGCACGACTGGTCGGGCTTCGCGCGCGGCTACAACGGCGCCGGCTATCGC 22839 | | ||| || |||||| | || ||||||| ||||||||||||||| |||||| Sbjct 1487719 AACCTTCGCAACCATGACTGGGCCGGATTCGCGCTGGGCTACAACGGCGCCTTGTATCGC 1487778 Query 22840 CAGAACCAGTACCATCTGAAGCTCGC 22865 | |||| || | | ||||||||| Sbjct 1487779 CGGAACGCCTATGACCGGAAGCTCGC 1487804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152811068577596