Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027334.1
Length=47800
Score E
Sequences producing significant alignments: (Bits) Value
seq11405 98.7 3e-16
seq6714 87.8 5e-13
>seq11405
Length=110570
Score = 98.7 bits (108), Expect = 3e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 31372 CCCCATTGCTTGAAGGTGAAGGCGACGCCAGCGTCGGCGCACTGGTCGCGAATGCCGCGA 31431
||||| |||||||| ||||||| ||| || | ||||||||||||| | || | |
Sbjct 75270 CCCCACTGCTTGAACATGAAGGCCGTGCCCACGGCCTCGCACTGGTCGCGCAGGCTGAGC 75329
Query 31432 GCCCAATCGGGATGCATCGGCCGGGCGCCGGATCCGCTCTCGCCGCCGGCGACAATCCAG 31491
||||| ||||||||||| || || || |||| ||||||||||||||| ||| | ||||
Sbjct 75330 GCCCAGTCGGGATGCATGGGACGCGCACCGGGGCCGCTCTCGCCGCCGACGATCACCCAG 75389
Query 31492 TC 31493
||
Sbjct 75390 TC 75391
>seq6714
Length=1758414
Score = 87.8 bits (96), Expect = 5e-13
Identities = 362/566 (64%), Gaps = 34/566 (6%)
Strand=Plus/Plus
Query 22324 GGCGCTGCGCGGCGCCTCGAGGATATCGATCTGCCGCGCATTGGCCATCGGATCGGGGTC 22383
|||||| |||||||||| | ||||||||| |||| | ||| |||||| |||
Sbjct 1487249 GGCGCTTCGCGGCGCCTGAACGATATCGATTTGCCAAAGCTCGGCGCGAAGATCGGTGTC 1487308
Query 22384 GGTGAGGACGAAATCCACGCGGTGATCGACGTGGAAACCGGCAACGGCCAGGGGTTCGAT 22443
|| |||||||||||||| || | |||| || || || | ||||| || ||||||
Sbjct 1487309 GGCGAGGACGAAATCCATGCCTTCCTCGATGTCGAGACACG---TGGCCATGGTTTCGAT 1487365
Query 22444 TCCACCGGGCGCCCGAAGATGCTGTTCGAGCCGCACATCTTCTACCGCGAGGTGCCGCGG 22503
|| || ||| || |||||||||||||| ||||||| ||| | || | |
Sbjct 1487366 GAACTTGGCCGGCCGGTCATCCTGTTCGAGCCGCATGTCTTCTATCGCAACCTGTCTGGA 1487425
Query 22504 GCGTTGCGCGACAAGGCGATCGCCGCCGGTCTCGCCTATCCGTCCTGGCGCCGGAATTAT 22563
|| || | |||| || || ||||| ||| | ||||| ||| ||
Sbjct 1487426 GCCACACGGGCTCAGGCCGTCAGGGCTGGTCTGGCCGCAAAGGCCTGG----GGAGCCAT 1487481
Query 22564 CC-----GGCCA--ACAGC------TATCCGCGCCTGGTCGAGGCCATGGCGATCGACGC 22610
|| ||| | | ||| ||||| |||||| | ||| ||| |||||| |
Sbjct 1487482 CCCCTATGGCAAGGAGAGCGACCAGTATCCACGCCTGAAGGCGGCGATGCTCATCGACTC 1487541
Query 22611 --------CACCGCCGCGCTGCGCTCGGCCTCCTGGGGGCTCGGCCAGGTGATGGGGTTC 22662
| |||||||||| ||||| || ||||| ||||||||||| | ||
Sbjct 1487542 ACCGATAACCCCGCCGCGCTCAAATCGGCATCGTGGGGCCTCGGCCAGGTTCTTGGCGAG 1487601
Query 22663 AACCATAAGATGGCCGGTTTCGACACCGTCCAGCAGATGG-TGCGGGCGTTCATGGAGGA 22721
||| | |||||| || ||||| ||| |||| || ||| | ||| ||||
Sbjct 1487602 AACTTCGAAGCGGCCGGCTTTCTGACCGTGCAGGCCATGGTTGACGGC-ATGATGCAGGA 1487660
Query 22722 TGAGGACCGGCATCTGGAGGCGATGGTCGCGTTCATCCAGTCGGCTGG--GCTCGATGAC 22779
||||| || || || || | || |||||| ||| | | |||||| ||
Sbjct 1487661 CGAGGAAATCCAGCTCGAAGCCGCGATCAACTTCATC--ATCGACAAGAAGCTCGACGAT 1487718
Query 22780 GAAATCCGCCGGCACGACTGGTCGGGCTTCGCGCGCGGCTACAACGGCGCCGGCTATCGC 22839
| | ||| || |||||| | || ||||||| ||||||||||||||| ||||||
Sbjct 1487719 AACCTTCGCAACCATGACTGGGCCGGATTCGCGCTGGGCTACAACGGCGCCTTGTATCGC 1487778
Query 22840 CAGAACCAGTACCATCTGAAGCTCGC 22865
| |||| || | | |||||||||
Sbjct 1487779 CGGAACGCCTATGACCGGAAGCTCGC 1487804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152811068577596
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |