Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027339.1
Length=38389
Score E
Sequences producing significant alignments: (Bits) Value
seq7304 134 3e-27
seq8065 96.9 9e-16
seq9795 84.2 5e-12
seq659 82.4 2e-11
>seq7304
Length=19908
Score = 134 bits (148), Expect = 3e-27
Identities = 542/836 (65%), Gaps = 32/836 (4%)
Strand=Plus/Minus
Query 741 TGTTGCCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACACTGGAACCGT 800
||||||| ||||| || || ||||||||| | || || ||| | | ||| || || |
Sbjct 14382 TGTTGCCCCACACAAAAGGTGAGTGGGCAATGAAAAGAATGAAGCTAAGACTAGAGCCTT 14323
Query 801 GGCAGCTCTTTGTGATCTGCT-GTGCGTTTGGCTGGGTCAATAAA--GGCTCCCGGCTGC 857
||||| |||| || |||| || | || |||||||| |||| || | || |
Sbjct 14322 GGCAGAAATTTGGAAT-TGCTTGTACTTTCGGCTGGGTTCGTAAAAAGGATG--GGTACC 14266
Query 858 GCCGCTTCAGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTG 917
| || ||||||||| ||| ||||| || ||||| || || || || ||||| | |
Sbjct 14265 GTCGATTCAGGGAGTCTTATTGGGAAATTCCTCGTAAAAATGGTAAGTCAGCAATTGCAG 14206
Query 918 CCGGTGTTGCCCTGTATTGTTTTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCG 977
| |||||||| || || ||||| |||| || | ||| || || || | |
Sbjct 14205 CTGGTGTTGCTCTCAATATGTTTGCTAATGATGGTGAATCGGGCAGCGAGGTTTACGCTG 14146
Query 978 GTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAAC 1037
|||| || || || ||||| || |||||||| ||| || || ||| | ||| |
Sbjct 14145 GTGCGACCACCGAAAAACAAGCATGGGAAGTATTTAAACCAGCTCGATTAATGGCAGTGC 14086
Query 1038 GCACACCCA----TGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT-CAAACATGAA 1092
| |||| || ||| || ||| || || || | || || || | ||||
Sbjct 14085 GTTCACCTGATTTTGTTGA-GGCAGCT---GGAATACAGATAAATGCTGGCAGTCTTGAA 14030
Query 1093 CCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTGATGGTTCATC 1152
|| || |||||| | |||||| | | | || | || |||||| ||
Sbjct 14029 ATA-CCTGAAGATGGCTCATTATTTGAAACTATTGTAGGCGATCCGCCTGATGGACAGTC 13971
Query 1153 ACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACCGATGCGCTTTATACCAC 1212
||| || ||||| | | ||||||||||||||||| || |||| | || |||
Sbjct 13970 ACCGCATTGTGCAATTATTGATGAATATCACGAGCATCAAACAAATGCACAGTACGACAC 13911
Query 1213 GATGCTTACCGGGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGG 1272
|||| || || ||||| ||||| ||||||||| |||||| | || || || | ||
Sbjct 13910 TATGCAAACGGGTATGGGGGCGCGTCGTCAGCCATTGATGTTTGTTATTACAACATCAGG 13851
Query 1273 GTACAACATTGAGGGGCCGTGCTACGACAAGCGGCGGGGAGGTAT---CGAGATGCTCAA 1329
| ||| ||||| || || || ||||| ||| | |||| || ||| |
Sbjct 13850 TTTCAATATTGATGGTCCTTGTCACGAC---TTGCGTTTACGTATTCAAGACATGTTGCT 13794
Query 1330 CGGTTCGGTACCCAACGATGAACTGTTCGGGATCATCTATACCGTTGACGAAGGCGATGA 1389
||| | || || | ||||| ||||| || |||| ||| |||| || || |||||
Sbjct 13793 TGGTACAGTGCCAGATGATGAGCTGTTTGGATATATCTGGACCATTGATGAGGGTGATGA 13734
Query 1390 CTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCG 1449
||||| || || |||| | | || |||||||||||| | || || |||||| |
Sbjct 13733 GTGGACAGATCCTAAGGTATTAGCCAAGGCCAATCCAAATTACGATGTTTCTGTTTATGG 13674
Query 1450 CGAATTTTTGTTAAGTCAGCAGCAGCGT---GCGAAAAATAACGCCCGTCT-GGCAAACG 1505
||| || || ||||| ||||| ||| || | |||||| || ||| | ||||
Sbjct 13673 CGA--TTACCTTGAGTCA-CAGCAACGTAAGGCAATAAATAA--TCCATCTCGTCAAAAT 13619
Query 1506 TC-TTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAA 1560
| || || || || || | || || ||||| || |||||| | ||| |||||
Sbjct 13618 ACATTCAAGACTAAGCATTTAAACATTTGGGTTTCTGCGCGTGAGCAGTACTTCAA 13563
>seq8065
Length=27066
Score = 96.9 bits (106), Expect = 9e-16
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 25595 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATACGGGACCAGCCATCAACGCC 25654
||| |||| ||||||||| | || | ||| | ||| || |||||||||||||| ||
Sbjct 26813 AAATTCCAAGCCATCAAAATTAGGGCTACTATTTACGATGCGCGACCAGCCATCAACACC 26754
Query 25655 CACCACCGGAACGATGCCGTTCTGCTTGTCAGGGAAGGCGTAAATTTCTTTCGTCCACGG 25714
|| || || | || || || | || |||||||| || || |||||||| ||||||||
Sbjct 26753 AACAACAGGGATTATCCCTTTATTTTTATCAGGGAAAGCATATATTTCTTTGGTCCACGG 26694
Query 25715 ATTAAGGCCGTACTGGTTGGCGACGATCAACAA 25747
|||||| || ||| || |||||||||||
Sbjct 26693 ATTAAGCTTATATTGGCCTGCAACGATCAACAA 26661
>seq9795
Length=220374
Score = 84.2 bits (92), Expect = 5e-12
Identities = 110/152 (72%), Gaps = 3/152 (2%)
Strand=Plus/Minus
Query 25595 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATACGGGACCAGCCATCAACGCC 25654
||| ||||||||||| || ||| | | ||| || ||||| || | ||||||||| || ||
Sbjct 198543 AAACTCCATGCCATCGAATTGCGGATGTTCGTTCATGATGCGTGTCCAGCCATCTACACC 198484
Query 25655 CACCACCGGAACGATGCCGTTCTGCTTGTCAGGGAAGGCGTAAATTTCTTTCGTCCACGG 25714
|| |||||||| |||||| ||| || || |||||||||| ||||| | ||
Sbjct 198483 AACAACCGGAACAATGCCG---CCCTTATCTGGATAGGCGTAAATCTCTTTAACAAAGGG 198427
Query 25715 ATTAAGGCCGTACTGGTTGGCGACGATCAACA 25746
||| | || || | ||| || || |||| ||
Sbjct 198426 ATTTAATCCATATTCGTTTGCAACAATCATCA 198395
>seq659
Length=6232
Score = 82.4 bits (90), Expect = 2e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 25595 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATACGGGACCAGCCATCAACGCC 25654
||| |||| ||||||||| | | | ||| | || || ||||| |||||||| ||
Sbjct 866 AAATTCCAAGCCATCAAAGTTAGGACTACTATTTACAATGCGTGACCAACCATCAACACC 925
Query 25655 CACCACCGGAACGATGCCGTTCTGCTTGTCAGGGAAGGCGTAAATTTCTTTCGTCCACGG 25714
|| || || | ||| || || | || |||||||||||||| || || || ||||| ||
Sbjct 926 AACAACAGGTATGATTCCTTTATTTTTATCAGGGAAGGCGTATATCTCCTTAGTCCAAGG 985
Query 25715 ATTAAGGCCGTACTGGTTGGCGACGATCAACAA 25747
|||||| || ||| || |||||||||||
Sbjct 986 ATTAAGCTTATATTGGCCTGCAACGATCAACAA 1018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122701253947058
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |