Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq7304 134 3e-27 seq8065 96.9 9e-16 seq9795 84.2 5e-12 seq659 82.4 2e-11 >seq7304 Length=19908 Score = 134 bits (148), Expect = 3e-27 Identities = 542/836 (65%), Gaps = 32/836 (4%) Strand=Plus/Minus Query 741 TGTTGCCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACACTGGAACCGT 800 ||||||| ||||| || || ||||||||| | || || ||| | | ||| || || | Sbjct 14382 TGTTGCCCCACACAAAAGGTGAGTGGGCAATGAAAAGAATGAAGCTAAGACTAGAGCCTT 14323 Query 801 GGCAGCTCTTTGTGATCTGCT-GTGCGTTTGGCTGGGTCAATAAA--GGCTCCCGGCTGC 857 ||||| |||| || |||| || | || |||||||| |||| || | || | Sbjct 14322 GGCAGAAATTTGGAAT-TGCTTGTACTTTCGGCTGGGTTCGTAAAAAGGATG--GGTACC 14266 Query 858 GCCGCTTCAGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTG 917 | || ||||||||| ||| ||||| || ||||| || || || || ||||| | | Sbjct 14265 GTCGATTCAGGGAGTCTTATTGGGAAATTCCTCGTAAAAATGGTAAGTCAGCAATTGCAG 14206 Query 918 CCGGTGTTGCCCTGTATTGTTTTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCG 977 | |||||||| || || ||||| |||| || | ||| || || || | | Sbjct 14205 CTGGTGTTGCTCTCAATATGTTTGCTAATGATGGTGAATCGGGCAGCGAGGTTTACGCTG 14146 Query 978 GTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAAC 1037 |||| || || || ||||| || |||||||| ||| || || ||| | ||| | Sbjct 14145 GTGCGACCACCGAAAAACAAGCATGGGAAGTATTTAAACCAGCTCGATTAATGGCAGTGC 14086 Query 1038 GCACACCCA----TGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT-CAAACATGAA 1092 | |||| || ||| || ||| || || || | || || || | |||| Sbjct 14085 GTTCACCTGATTTTGTTGA-GGCAGCT---GGAATACAGATAAATGCTGGCAGTCTTGAA 14030 Query 1093 CCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTGATGGTTCATC 1152 || || |||||| | |||||| | | | || | || |||||| || Sbjct 14029 ATA-CCTGAAGATGGCTCATTATTTGAAACTATTGTAGGCGATCCGCCTGATGGACAGTC 13971 Query 1153 ACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACCGATGCGCTTTATACCAC 1212 ||| || ||||| | | ||||||||||||||||| || |||| | || ||| Sbjct 13970 ACCGCATTGTGCAATTATTGATGAATATCACGAGCATCAAACAAATGCACAGTACGACAC 13911 Query 1213 GATGCTTACCGGGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGG 1272 |||| || || ||||| ||||| ||||||||| |||||| | || || || | || Sbjct 13910 TATGCAAACGGGTATGGGGGCGCGTCGTCAGCCATTGATGTTTGTTATTACAACATCAGG 13851 Query 1273 GTACAACATTGAGGGGCCGTGCTACGACAAGCGGCGGGGAGGTAT---CGAGATGCTCAA 1329 | ||| ||||| || || || ||||| ||| | |||| || ||| | Sbjct 13850 TTTCAATATTGATGGTCCTTGTCACGAC---TTGCGTTTACGTATTCAAGACATGTTGCT 13794 Query 1330 CGGTTCGGTACCCAACGATGAACTGTTCGGGATCATCTATACCGTTGACGAAGGCGATGA 1389 ||| | || || | ||||| ||||| || |||| ||| |||| || || ||||| Sbjct 13793 TGGTACAGTGCCAGATGATGAGCTGTTTGGATATATCTGGACCATTGATGAGGGTGATGA 13734 Query 1390 CTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCG 1449 ||||| || || |||| | | || |||||||||||| | || || |||||| | Sbjct 13733 GTGGACAGATCCTAAGGTATTAGCCAAGGCCAATCCAAATTACGATGTTTCTGTTTATGG 13674 Query 1450 CGAATTTTTGTTAAGTCAGCAGCAGCGT---GCGAAAAATAACGCCCGTCT-GGCAAACG 1505 ||| || || ||||| ||||| ||| || | |||||| || ||| | |||| Sbjct 13673 CGA--TTACCTTGAGTCA-CAGCAACGTAAGGCAATAAATAA--TCCATCTCGTCAAAAT 13619 Query 1506 TC-TTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAA 1560 | || || || || || | || || ||||| || |||||| | ||| ||||| Sbjct 13618 ACATTCAAGACTAAGCATTTAAACATTTGGGTTTCTGCGCGTGAGCAGTACTTCAA 13563 >seq8065 Length=27066 Score = 96.9 bits (106), Expect = 9e-16 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 25595 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATACGGGACCAGCCATCAACGCC 25654 ||| |||| ||||||||| | || | ||| | ||| || |||||||||||||| || Sbjct 26813 AAATTCCAAGCCATCAAAATTAGGGCTACTATTTACGATGCGCGACCAGCCATCAACACC 26754 Query 25655 CACCACCGGAACGATGCCGTTCTGCTTGTCAGGGAAGGCGTAAATTTCTTTCGTCCACGG 25714 || || || | || || || | || |||||||| || || |||||||| |||||||| Sbjct 26753 AACAACAGGGATTATCCCTTTATTTTTATCAGGGAAAGCATATATTTCTTTGGTCCACGG 26694 Query 25715 ATTAAGGCCGTACTGGTTGGCGACGATCAACAA 25747 |||||| || ||| || ||||||||||| Sbjct 26693 ATTAAGCTTATATTGGCCTGCAACGATCAACAA 26661 >seq9795 Length=220374 Score = 84.2 bits (92), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 25595 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATACGGGACCAGCCATCAACGCC 25654 ||| ||||||||||| || ||| | | ||| || ||||| || | ||||||||| || || Sbjct 198543 AAACTCCATGCCATCGAATTGCGGATGTTCGTTCATGATGCGTGTCCAGCCATCTACACC 198484 Query 25655 CACCACCGGAACGATGCCGTTCTGCTTGTCAGGGAAGGCGTAAATTTCTTTCGTCCACGG 25714 || |||||||| |||||| ||| || || |||||||||| ||||| | || Sbjct 198483 AACAACCGGAACAATGCCG---CCCTTATCTGGATAGGCGTAAATCTCTTTAACAAAGGG 198427 Query 25715 ATTAAGGCCGTACTGGTTGGCGACGATCAACA 25746 ||| | || || | ||| || || |||| || Sbjct 198426 ATTTAATCCATATTCGTTTGCAACAATCATCA 198395 >seq659 Length=6232 Score = 82.4 bits (90), Expect = 2e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 25595 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATACGGGACCAGCCATCAACGCC 25654 ||| |||| ||||||||| | | | ||| | || || ||||| |||||||| || Sbjct 866 AAATTCCAAGCCATCAAAGTTAGGACTACTATTTACAATGCGTGACCAACCATCAACACC 925 Query 25655 CACCACCGGAACGATGCCGTTCTGCTTGTCAGGGAAGGCGTAAATTTCTTTCGTCCACGG 25714 || || || | ||| || || | || |||||||||||||| || || || ||||| || Sbjct 926 AACAACAGGTATGATTCCTTTATTTTTATCAGGGAAGGCGTATATCTCCTTAGTCCAAGG 985 Query 25715 ATTAAGGCCGTACTGGTTGGCGACGATCAACAA 25747 |||||| || ||| || ||||||||||| Sbjct 986 ATTAAGCTTATATTGGCCTGCAACGATCAACAA 1018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122701253947058