Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027348.1
Length=73990
Score E
Sequences producing significant alignments: (Bits) Value
seq9639 150 8e-32
seq9470 125 3e-24
seq6415 109 3e-19
seq10734 100 1e-16
>seq9639
Length=103419
Score = 150 bits (166), Expect = 8e-32
Identities = 298/431 (69%), Gaps = 14/431 (3%)
Strand=Plus/Minus
Query 21388 TACTACCAGGGCGAGGGCAAGTCTGACCGCACTGGCACAGGCACCAAGTCCGTATTCGGT 21447
||| | || |||| | |||| | ||||| || ||||| ||||| ||| |||||
Sbjct 4318 TACGAGCACGGCGTGTCCAAGACCGACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGC 4259
Query 21448 GCCCAGATGGAATTCGATCTGCGTGAGGGCTTCCCCCTGCTC--CAG-AAGAAGAC-CAC 21503
||||||| ||||| ||| || ||||| || ||| || || |||||| |||
Sbjct 4258 CACCAGATGCGCTTCGACCTGTCCGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCAC 4199
Query 21504 CCCCTTCACCACGATCTTCACCGAGCTCTCGTGGATGATGCAGGGCCTGACCAATGTGAA 21563
| ||| | ||| || || || |||| | ||| ||| | |||||||
Sbjct 4198 C----TCAAGTCCATCATCCTGGAACTGCTGTGGTTCCTGCGCGGCGACAGCAATGTGCG 4143
Query 21564 CTGGCTACAGCAAAAGGGCTGCCACATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCT 21623
|||||| ||| | |||||| |||||||||||||||||| | || |||| |||
Sbjct 4142 CTGGCTGCAGGAGCGCGGCTGCACCATCTGGGACGAATGGGCCCGCGAGGACGGCGACCT 4083
Query 21624 CGGCCCGATCTATGGTGCCCAGTGGCGCAGCAT-CCAAGGCCCCGATGGAAAGAACATCG 21682
|||||| ||||||| | || ||||||| | || | ||| || || ||||||
Sbjct 4082 GGGCCCGGTCTATGGCGTGCAATGGCGCAACTGGCCGACGCCG-GACGGCGGCCACATCG 4024
Query 21683 ACCAGCTGGCC-AAG-GCACAAGAGCTGCTGCTGAACGACCCGGACAGCCGCCGCATCAT 21740
||||| | ||| ||| | |||| | ||| || | ||||||||||||||||||||||
Sbjct 4023 ACCAGATCGCCGAAGTGGTCAAG--CAGCTCAAGAGCAACCCGGACAGCCGCCGCATCAT 3966
Query 21741 CGTGAATGCCTGGAACGTGGCCGAGCTCGACCAGATGGCCCTGACACCGTGCCATGCGAT 21800
||| | ||||||||||||||||| || |||||||| || | || ||||| || |
Sbjct 3965 CGTCAGCGCCTGGAACGTGGCCGACCTGCCGCAGATGGCGCTCATGCCCTGCCACGCCTT 3906
Query 21801 GTTCCAGTTCT 21811
||||||||||
Sbjct 3905 CTTCCAGTTCT 3895
Score = 129 bits (142), Expect = 3e-25
Identities = 143/188 (76%), Gaps = 7/188 (4%)
Strand=Plus/Minus
Query 21949 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 22008
|| |||||| | || || ||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 3877 CTCAGCTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATC 3818
Query 22009 GCCAGCTACGCGCTGCTGACGCACCTCATGG--CGGCCACGGTCGGCATGCAGGCCGAGA 22066
|||||||||||||||||||| ||| | ||| | || | | || | || ||| |
Sbjct 3817 GCCAGCTACGCGCTGCTGACCCACATGCTGGCCCAGCAATG--CGACCTGGAGGTGGGCG 3760
Query 22067 AGTTCATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGCCAAG- 22125
| ||||||||| | ||||| ||||||||| | ||| |||||| | ||||| | ||
Sbjct 3759 ACTTCATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACTTCACCCAGGTCGAGA 3700
Query 22126 --CAGCTG 22131
||||||
Sbjct 3699 CCCAGCTG 3692
>seq9470
Length=127963
Score = 125 bits (138), Expect = 3e-24
Identities = 279/406 (69%), Gaps = 12/406 (3%)
Strand=Plus/Minus
Query 21412 GACCGCACTGGCACAGGCACCAAGTCCGTATTCGGTGCCCAGATGGAATTCGATCTG-CG 21470
|||||||| ||||| |||||| | ||| ||||| ||||||| ||||| ||| ||
Sbjct 53204 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCG 53145
Query 21471 TGAGGGCTTCCCCCTGCT--CCAG-AAGAAGACCACCCCCTTCACCACGATCTTCACCGA 21527
| |||||| || ||||| ||| |||||| | | ||| | | ||||| || |||
Sbjct 53144 CG-GGGCTTTCCGCTGCTGACCACCAAGAAG--CTGCACCTGCGCT-CGATCATCGTCGA 53089
Query 21528 GCTCTCGTGGATGATGCAGGGCCTGACCAATGTGAACTGGCTACAGCAAAAGGGCTGCCA 21587
||| |||| | ||| ||| |||||| | |||||| || | || || |
Sbjct 53088 GCTTCTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAG 53029
Query 21588 CATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGATCTATGGTGCCCAGTG 21647
|||||||||||||||||| | | || |||| ||||| ||| |||| || |||||
Sbjct 53028 CATCTGGGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTG 52969
Query 21648 GCGCAGCATCCAAGGC-CCCGATGGAAAGAACATCGACCAGCTGGCCAAGGCACAAGAGC 21706
|||| | | ||| ||||| || ||||||||| | ||||| | |||
Sbjct 52968 GCGC-TCGTGGGCGGCGCCCGACGGCCGCGTGATCGACCAGATCGCCAATGTGGTCGAGG 52910
Query 21707 TGCTGCTGAACGACCCGGACAGCCGCCGCATCATCGTGAATGCCTGGAACGTGGCCGAGC 21766
| | | | |||| ||||||||||| |||||| ||||||||| ||||||
Sbjct 52909 CGATCCGCGCCAACCCCAACAGCCGCCGCCACATCGTCTCGGCCTGGAACCCGGCCGACG 52850
Query 21767 TCGACCAGATGGCCCTGACACCGTGCCA-TGCGATGTTCCAGTTCT 21811
||||| | ||||||||| | |||||||| ||| ||||||||||||
Sbjct 52849 TCGACGACATGGCCCTGCCGCCGTGCCACTGC-CTGTTCCAGTTCT 52805
>seq6415
Length=247467
Score = 109 bits (120), Expect = 3e-19
Identities = 131/177 (74%), Gaps = 6/177 (3%)
Strand=Plus/Plus
Query 21949 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 22008
||||||||| | |||||||| |||||||| ||| ||||| | || ||||| |||||||||
Sbjct 53386 CTGAGCTGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATC 53445
Query 22009 GCCAGCTACGCGCTGCTGACGCACCTCATGGCGGCCACG---GTCGGCATGCAGGCCGAG 22065
||| |||||| |||||||| ||| |||| |||| | |||||| || || | |
Sbjct 53446 GCCTCCTACGCCCTGCTGAC---CCTGATGGTCGCCAAGGTCGTCGGCCTGGAGCCGGGC 53502
Query 22066 AAGTTCATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGCC 22122
||||| || | ||| ||| |||||| || ||||||| | |||||||||
Sbjct 53503 GAGTTCGTCCACACCTTCGGCGACGCCCACCTCTATCTGAACCACCTCGACCAGGCC 53559
>seq10734
Length=9239
Score = 100 bits (110), Expect = 1e-16
Identities = 78/93 (84%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 21949 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 22008
|| |||||| | || || |||||||||| ||||| ||||| || ||||| |||||||||
Sbjct 1697 CTCAGCTGCCAGCTGTACCAGCGCAGCGGCGACATCTTCCTCGGAGTGCCGTTCAACATC 1756
Query 22009 GCCAGCTACGCGCTGCTGACGCACCTCATGGCG 22041
|||||||||||||||||||| ||| | |||||
Sbjct 1757 GCCAGCTACGCGCTGCTGACCCACATGGTGGCG 1789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 236599768503749
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |