Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027348.2 Length=73882 Score E Sequences producing significant alignments: (Bits) Value seq9639 150 8e-32 seq9470 125 3e-24 seq6415 109 3e-19 seq10734 100 1e-16 >seq9639 Length=103419 Score = 150 bits (166), Expect = 8e-32 Identities = 298/431 (69%), Gaps = 14/431 (3%) Strand=Plus/Minus Query 21116 TACTACCAGGGCGAGGGCAAGTCTGACCGCACTGGCACAGGCACCAAGTCCGTATTCGGT 21175 ||| | || |||| | |||| | ||||| || ||||| ||||| ||| ||||| Sbjct 4318 TACGAGCACGGCGTGTCCAAGACCGACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGC 4259 Query 21176 GCCCAGATGGAATTCGATCTGCGTGAGGGCTTCCCCCTGCTC--CAG-AAGAAGAC-CAC 21231 ||||||| ||||| ||| || ||||| || ||| || || |||||| ||| Sbjct 4258 CACCAGATGCGCTTCGACCTGTCCGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCAC 4199 Query 21232 CCCCTTCACCACGATCTTCACCGAGCTCTCGTGGATGATGCAGGGCCTGACCAATGTGAA 21291 | ||| | ||| || || || |||| | ||| ||| | ||||||| Sbjct 4198 C----TCAAGTCCATCATCCTGGAACTGCTGTGGTTCCTGCGCGGCGACAGCAATGTGCG 4143 Query 21292 CTGGCTACAGCAAAAGGGCTGCCACATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCT 21351 |||||| ||| | |||||| |||||||||||||||||| | || |||| ||| Sbjct 4142 CTGGCTGCAGGAGCGCGGCTGCACCATCTGGGACGAATGGGCCCGCGAGGACGGCGACCT 4083 Query 21352 CGGCCCGATCTATGGTGCCCAGTGGCGCAGCAT-CCAAGGCCCCGATGGAAAGAACATCG 21410 |||||| ||||||| | || ||||||| | || | ||| || || |||||| Sbjct 4082 GGGCCCGGTCTATGGCGTGCAATGGCGCAACTGGCCGACGCCG-GACGGCGGCCACATCG 4024 Query 21411 ACCAGCTGGCC-AAG-GCACAAGAGCTGCTGCTGAACGACCCGGACAGCCGCCGCATCAT 21468 ||||| | ||| ||| | |||| | ||| || | |||||||||||||||||||||| Sbjct 4023 ACCAGATCGCCGAAGTGGTCAAG--CAGCTCAAGAGCAACCCGGACAGCCGCCGCATCAT 3966 Query 21469 CGTGAATGCCTGGAACGTGGCCGAGCTCGACCAGATGGCCCTGACACCGTGCCATGCGAT 21528 ||| | ||||||||||||||||| || |||||||| || | || ||||| || | Sbjct 3965 CGTCAGCGCCTGGAACGTGGCCGACCTGCCGCAGATGGCGCTCATGCCCTGCCACGCCTT 3906 Query 21529 GTTCCAGTTCT 21539 |||||||||| Sbjct 3905 CTTCCAGTTCT 3895 Score = 129 bits (142), Expect = 3e-25 Identities = 143/188 (76%), Gaps = 7/188 (4%) Strand=Plus/Minus Query 21677 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 21736 || |||||| | || || ||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 3877 CTCAGCTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATC 3818 Query 21737 GCCAGCTACGCGCTGCTGACGCACCTCATGG--CGGCCACGGTCGGCATGCAGGCCGAGA 21794 |||||||||||||||||||| ||| | ||| | || | | || | || ||| | Sbjct 3817 GCCAGCTACGCGCTGCTGACCCACATGCTGGCCCAGCAATG--CGACCTGGAGGTGGGCG 3760 Query 21795 AGTTCATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGCCAAG- 21853 | ||||||||| | ||||| ||||||||| | ||| |||||| | ||||| | || Sbjct 3759 ACTTCATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACTTCACCCAGGTCGAGA 3700 Query 21854 --CAGCTG 21859 |||||| Sbjct 3699 CCCAGCTG 3692 >seq9470 Length=127963 Score = 125 bits (138), Expect = 3e-24 Identities = 279/406 (69%), Gaps = 12/406 (3%) Strand=Plus/Minus Query 21140 GACCGCACTGGCACAGGCACCAAGTCCGTATTCGGTGCCCAGATGGAATTCGATCTG-CG 21198 |||||||| ||||| |||||| | ||| ||||| ||||||| ||||| ||| || Sbjct 53204 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCG 53145 Query 21199 TGAGGGCTTCCCCCTGCT--CCAG-AAGAAGACCACCCCCTTCACCACGATCTTCACCGA 21255 | |||||| || ||||| ||| |||||| | | ||| | | ||||| || ||| Sbjct 53144 CG-GGGCTTTCCGCTGCTGACCACCAAGAAG--CTGCACCTGCGCT-CGATCATCGTCGA 53089 Query 21256 GCTCTCGTGGATGATGCAGGGCCTGACCAATGTGAACTGGCTACAGCAAAAGGGCTGCCA 21315 ||| |||| | ||| ||| |||||| | |||||| || | || || | Sbjct 53088 GCTTCTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAG 53029 Query 21316 CATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGATCTATGGTGCCCAGTG 21375 |||||||||||||||||| | | || |||| ||||| ||| |||| || ||||| Sbjct 53028 CATCTGGGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTG 52969 Query 21376 GCGCAGCATCCAAGGC-CCCGATGGAAAGAACATCGACCAGCTGGCCAAGGCACAAGAGC 21434 |||| | | ||| ||||| || ||||||||| | ||||| | ||| Sbjct 52968 GCGC-TCGTGGGCGGCGCCCGACGGCCGCGTGATCGACCAGATCGCCAATGTGGTCGAGG 52910 Query 21435 TGCTGCTGAACGACCCGGACAGCCGCCGCATCATCGTGAATGCCTGGAACGTGGCCGAGC 21494 | | | | |||| ||||||||||| |||||| ||||||||| |||||| Sbjct 52909 CGATCCGCGCCAACCCCAACAGCCGCCGCCACATCGTCTCGGCCTGGAACCCGGCCGACG 52850 Query 21495 TCGACCAGATGGCCCTGACACCGTGCCA-TGCGATGTTCCAGTTCT 21539 ||||| | ||||||||| | |||||||| ||| |||||||||||| Sbjct 52849 TCGACGACATGGCCCTGCCGCCGTGCCACTGC-CTGTTCCAGTTCT 52805 >seq6415 Length=247467 Score = 109 bits (120), Expect = 3e-19 Identities = 131/177 (74%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 21677 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 21736 ||||||||| | |||||||| |||||||| ||| ||||| | || ||||| ||||||||| Sbjct 53386 CTGAGCTGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATC 53445 Query 21737 GCCAGCTACGCGCTGCTGACGCACCTCATGGCGGCCACG---GTCGGCATGCAGGCCGAG 21793 ||| |||||| |||||||| ||| |||| |||| | |||||| || || | | Sbjct 53446 GCCTCCTACGCCCTGCTGAC---CCTGATGGTCGCCAAGGTCGTCGGCCTGGAGCCGGGC 53502 Query 21794 AAGTTCATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGCC 21850 ||||| || | ||| ||| |||||| || ||||||| | ||||||||| Sbjct 53503 GAGTTCGTCCACACCTTCGGCGACGCCCACCTCTATCTGAACCACCTCGACCAGGCC 53559 >seq10734 Length=9239 Score = 100 bits (110), Expect = 1e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 21677 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 21736 || |||||| | || || |||||||||| ||||| ||||| || ||||| ||||||||| Sbjct 1697 CTCAGCTGCCAGCTGTACCAGCGCAGCGGCGACATCTTCCTCGGAGTGCCGTTCAACATC 1756 Query 21737 GCCAGCTACGCGCTGCTGACGCACCTCATGGCG 21769 |||||||||||||||||||| ||| | ||||| Sbjct 1757 GCCAGCTACGCGCTGCTGACCCACATGGTGGCG 1789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236254231932257