Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq7835 111 4e-19 seq8237 105 1e-17 seq9956 104 5e-17 seq11739 93.3 9e-14 seq11149 89.7 1e-12 seq9384 86.0 1e-11 seq9803 84.2 5e-11 >seq7835 Length=204203 Score = 111 bits (122), Expect = 4e-19 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 210919 TTTGGCGGTGAAGGTGAGATTTGAACTCACGGAGGACTTTCGCCCTCGACGGTTTTCAAG 210978 |||||||| ||||||||| |||||||||||||||| | |||||| ||||||||||| Sbjct 60656 TTTGGCGGAAGCGGTGAGATTCGAACTCACGGAGGACTCACACCCTCGTCGGTTTTCAAG 60597 Query 210979 ACCGTTGCATTAAACCGCTCTGCCAC 211004 |||| ||||||||||||||||||||| Sbjct 60596 ACCGGTGCATTAAACCGCTCTGCCAC 60571 >seq8237 Length=506431 Score = 105 bits (116), Expect = 1e-17 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 210919 TTTGGCGGTGAAGGTGAGATTTGAACTCACGGAGGACTTTCGCCCTCGACGGTTTTCAAG 210978 |||||||| ||||||||| |||||||||||||||| | |||||| | ||||||||| Sbjct 133544 TTTGGCGGAAGCGGTGAGATTCGAACTCACGGAGGACTCACACCCTCGTCCGTTTTCAAG 133603 Query 210979 ACCGTTGCATTAAACCGCTCTGCCAC 211004 |||| ||||||||||||||||||||| Sbjct 133604 ACCGGTGCATTAAACCGCTCTGCCAC 133629 Score = 84.2 bits (92), Expect = 5e-11 Identities = 174/258 (67%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 28158 ATAACGAGTAGCAAATCGAGCAAGACGTAACACACGTAATGGATCTTCTTTAAAATGGTC 28217 |||||||| |||||| ||||| | ||| | || ||||| ||||||||| |||| ||| Sbjct 174303 ATAACGAGCAGCAAAACGAGCCACACGCAGTACGCGTAACGGATCTTCTGCAAAAGCGTC 174244 Query 28218 AGAAACATGACGTAGTACCTTGTTCTTGATATCAGCTTTACCACCGTATGGATCGATATG 28277 ||||| |||||||| | || | | | |||| ||| ||| || ||||| || Sbjct 174243 TGAAACGTGACGTAGGATTTTATGCGCTAAATCATCTTGTCCATGATAAGGATC---ATA 174187 Query 28278 AATTTGTAGTACTGGATCATACGAAATTGCATTTATTGTTAGGTCACGGCGATACAAATC 28337 | ||| | || ||| || ||| ||||| || |||| |||||| ||| ||||| Sbjct 174186 CACTTGACCTGCTTCATCCATCGCAATGGCATTGATGGTTAAGTCACGACGAATTAAATC 174127 Query 28338 TTGTTCGAGTGTTACGCCT---TTTGTATCCACTTCAAAGCCACCATATCCAGTACCAGT 28394 | ||| | || || || | ||| | ||||| ||| ||| || || | Sbjct 174126 CTCTTCTAAGGTGACATCTGGATCGGTAAAAAACTCAAATCCATGATAACCGTGTCCTGA 174067 Query 28395 TTTACGCTCAGTACGTGC 28412 ||||||||||||||| || Sbjct 174066 TTTACGCTCAGTACGGGC 174049 >seq9956 Length=123604 Score = 104 bits (114), Expect = 5e-17 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 210919 TTTGGCGGTGAAGGTGAGATTTGAACTCACGGAGGACTTTCGCCCTCGACGGTTTTCAAG 210978 |||||||| |||||||||| ||||||||||||| | | |||||||| ||||||||| Sbjct 93286 TTTGGCGGAAGAGGTGAGATTCGAACTCACGGAGGGCGTGAACCCTCGACAGTTTTCAAG 93345 Query 210979 ACCGTTGCATTAAACCGCTCTGCCACT 211005 || || ||||||||||||||||||||| Sbjct 93346 ACTGTAGCATTAAACCGCTCTGCCACT 93372 >seq11739 Length=237542 Score = 93.3 bits (102), Expect = 9e-14 Identities = 113/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 6117 TTTTACTTGTTCAACGTGGTTTT--TATAAATGTGGCAATCACCACCATTCCAAATAAAT 6174 |||| ||||||||| ||||| |||||||||| |||||| ||| |||| | ||| Sbjct 8780 TTTTGCTTGTTCAAAATGGTTAACATATAAATGTGT--ATCACCGCCAGTCCAGACAAAA 8837 Query 6175 TCACCAACATCTAAACCCGTAATTTGTGCAATCATATGAGTTAGTAGTGAATAACTACTG 6234 ||||| || ||||||| || ||| |||| ||||||||| ||||| | ||| || Sbjct 8838 TCACCTACGCCTAAACCACAAACTTGAGCAACCATATGAGTCAGTAGAGCATAGCTGGCA 8897 Query 6235 ATATTAAATGGAACTCCCAAAAATAGATCAGC 6266 ||||||||||| || || || || | ||| || Sbjct 8898 ATATTAAATGGCACCCCTAAGAAAACATCTGC 8929 >seq11149 Length=204457 Score = 89.7 bits (98), Expect = 1e-12 Identities = 245/370 (66%), Gaps = 14/370 (4%) Strand=Plus/Plus Query 331934 AACATTATGGAATTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTTCATC 331993 ||||| |||||| | |||| || | |||||||||| | ||| || ||||| Sbjct 130717 AACATGATGGAAATCTTCAAACTTGCTTTTCAAACCACGCAAAATATCAATTGTTTCTGA 130776 Query 331994 AATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTC 332053 ||| | |||||| || |||||||| |||||||| | || |||| |||||| || Sbjct 130777 AATAGAAGGCTCATTCACATCAATTTTTTGGAAACGACGTGATAGTGCATGATCTTTTTC 130836 Query 332054 GATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACACG-AATCTCACCACGTG 332112 | || |||||||| | | || |||| |||||| ||| || || |||| | Sbjct 130837 AAATACTTGGCGATATTCTTGGAAAGTGGTTGAACCAATACAACGTAAACT-ACCATTCG 130895 Query 332113 AAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAAC---CATTACTTGCGGAACCAG 332169 | || || |||| | ||| |||||| | || | |||||| | |||| Sbjct 130896 CCAACGCAGGTTTAATTAAATTCGATGCGTCCATGGTACTGCCCATACTTGAG---CCAG 130952 Query 332170 CCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTT---A 332226 | |||| || ||||||||||||||||| || | ||| | ||| |||||||| | Sbjct 130953 CACCAATGATCATATGAATTTCATCAATAAATAAAATTG---CTTCTGGTTTCTTTTTCA 131009 Query 332227 GTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCAG 332286 | || || | | | | ||||| |||||| |||||||| || || ||||| ||| Sbjct 131010 AAGCATTGAGAAGCTGTTTCAAGCGTTTTTCAAAGTCACCACGGTATTTTGTACCTGCAA 131069 Query 332287 TCAATGCACC 332296 |||||| || Sbjct 131070 CCAATGCGCC 131079 Score = 86.0 bits (94), Expect = 1e-11 Identities = 168/245 (69%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 331339 GATCTGCTTTTTCAATTTCATCAAGTAACAGTACTGCATTAGGGAA-CTGCTCAATTTTA 331397 ||| |||||||||||||||||| | ||||| || || | ||| || | ||| Sbjct 130122 GATGTGCTTTTTCAATTTCATCTAATAACAAGACA-CAGTGCGGATTCTTATGAATCGCG 130180 Query 331398 TCCAACAGTAAACCGTTACCAGAATCATGACCAACATAACCTGGAGGTGAACCAATTAGT 331457 || ||||||||| ||| ||||| |||||||||||||||||| | |||||| | Sbjct 130181 TCAGTCAGTAAACC---ACCTTGATCATAACCAACATAACCTGGAGGCGCACCAATCAAA 130237 Query 331458 TTAGAAACAGTATGTTCTTGAGAAAATTCTGACATATCAAAGCGAATGAGTTCCGCACCA 331517 |||||||| ||| | | |||| |||||||| || |||| || || |||| Sbjct 130238 CGAGAAACAGCATGACGCTCCATATATTCAGACATATCGAAACGAACAAGCTCTACACCC 130297 Query 331518 GTTGCGTCTGCTAATGCTTTGGTAATTTCTGTTTTACCAGTACCAGATGGTCCAACAAAC 331577 | ||| ||| |||||| | ||||||||||||| ||| | || || |||| Sbjct 130298 AGCAATTTTGCCAATTGTTTGGTCACTTCTGTTTTACCAACACCTGTAGGCCCTGCAAAA 130357 Query 331578 ATAAA 331582 | ||| Sbjct 130358 ACAAA 130362 >seq9384 Length=121766 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 209108 TTGGCAGTGAGTGTGGGATTCGAACCCACGATACGCTTTCGCATATGCTACCTTAGCAGG 209167 ||||| ||||| | ||||||||||||| |||||| || | | ||||| |||||||||| Sbjct 33499 TTGGCGGTGAGAGAGGGATTCGAACCCTCGATACAGTTACCCGTATGCATCCTTAGCAGG 33558 Query 209168 GTAGTGATTTCAACCACTCATCCAACTCAC 209197 | ||| ||||| ||||||| ||| ||||| Sbjct 33559 GATGTGGTTTCAGCCACTCACCCATCTCAC 33588 >seq9803 Length=69196 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 209024 ATTGGTGGGCCATCGGTGAGTCGAACACCGTACCGAACGATTATGAGTCGTTTGCTCTAA 209083 |||||||| || || ||||||||||||| | ||| | ||||||||||| |||||||| Sbjct 52701 ATTGGTGGCCCCTCTGTGAGTCGAACACAGCACCAACGGATTATGAGTCCGCTGCTCTAA 52642 Query 209084 CCACGCGTGAGCTAATGGCCCGTA 209107 ||| || |||||||| || ||||| Sbjct 52641 CCAAGCATGAGCTAAGGGGCCGTA 52618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113615493733832