Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027364.1
Length=348113
Score E
Sequences producing significant alignments: (Bits) Value
seq7835 111 4e-19
seq8237 105 1e-17
seq9956 104 5e-17
seq11739 93.3 9e-14
seq11149 89.7 1e-12
seq9384 86.0 1e-11
seq9803 84.2 5e-11
>seq7835
Length=204203
Score = 111 bits (122), Expect = 4e-19
Identities = 76/86 (88%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 210919 TTTGGCGGTGAAGGTGAGATTTGAACTCACGGAGGACTTTCGCCCTCGACGGTTTTCAAG 210978
|||||||| ||||||||| |||||||||||||||| | |||||| |||||||||||
Sbjct 60656 TTTGGCGGAAGCGGTGAGATTCGAACTCACGGAGGACTCACACCCTCGTCGGTTTTCAAG 60597
Query 210979 ACCGTTGCATTAAACCGCTCTGCCAC 211004
|||| |||||||||||||||||||||
Sbjct 60596 ACCGGTGCATTAAACCGCTCTGCCAC 60571
>seq8237
Length=506431
Score = 105 bits (116), Expect = 1e-17
Identities = 75/86 (87%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 210919 TTTGGCGGTGAAGGTGAGATTTGAACTCACGGAGGACTTTCGCCCTCGACGGTTTTCAAG 210978
|||||||| ||||||||| |||||||||||||||| | |||||| | |||||||||
Sbjct 133544 TTTGGCGGAAGCGGTGAGATTCGAACTCACGGAGGACTCACACCCTCGTCCGTTTTCAAG 133603
Query 210979 ACCGTTGCATTAAACCGCTCTGCCAC 211004
|||| |||||||||||||||||||||
Sbjct 133604 ACCGGTGCATTAAACCGCTCTGCCAC 133629
Score = 84.2 bits (92), Expect = 5e-11
Identities = 174/258 (67%), Gaps = 6/258 (2%)
Strand=Plus/Minus
Query 28158 ATAACGAGTAGCAAATCGAGCAAGACGTAACACACGTAATGGATCTTCTTTAAAATGGTC 28217
|||||||| |||||| ||||| | ||| | || ||||| ||||||||| |||| |||
Sbjct 174303 ATAACGAGCAGCAAAACGAGCCACACGCAGTACGCGTAACGGATCTTCTGCAAAAGCGTC 174244
Query 28218 AGAAACATGACGTAGTACCTTGTTCTTGATATCAGCTTTACCACCGTATGGATCGATATG 28277
||||| |||||||| | || | | | |||| ||| ||| || ||||| ||
Sbjct 174243 TGAAACGTGACGTAGGATTTTATGCGCTAAATCATCTTGTCCATGATAAGGATC---ATA 174187
Query 28278 AATTTGTAGTACTGGATCATACGAAATTGCATTTATTGTTAGGTCACGGCGATACAAATC 28337
| ||| | || ||| || ||| ||||| || |||| |||||| ||| |||||
Sbjct 174186 CACTTGACCTGCTTCATCCATCGCAATGGCATTGATGGTTAAGTCACGACGAATTAAATC 174127
Query 28338 TTGTTCGAGTGTTACGCCT---TTTGTATCCACTTCAAAGCCACCATATCCAGTACCAGT 28394
| ||| | || || || | ||| | ||||| ||| ||| || || |
Sbjct 174126 CTCTTCTAAGGTGACATCTGGATCGGTAAAAAACTCAAATCCATGATAACCGTGTCCTGA 174067
Query 28395 TTTACGCTCAGTACGTGC 28412
||||||||||||||| ||
Sbjct 174066 TTTACGCTCAGTACGGGC 174049
>seq9956
Length=123604
Score = 104 bits (114), Expect = 5e-17
Identities = 75/87 (86%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 210919 TTTGGCGGTGAAGGTGAGATTTGAACTCACGGAGGACTTTCGCCCTCGACGGTTTTCAAG 210978
|||||||| |||||||||| ||||||||||||| | | |||||||| |||||||||
Sbjct 93286 TTTGGCGGAAGAGGTGAGATTCGAACTCACGGAGGGCGTGAACCCTCGACAGTTTTCAAG 93345
Query 210979 ACCGTTGCATTAAACCGCTCTGCCACT 211005
|| || |||||||||||||||||||||
Sbjct 93346 ACTGTAGCATTAAACCGCTCTGCCACT 93372
>seq11739
Length=237542
Score = 93.3 bits (102), Expect = 9e-14
Identities = 113/152 (74%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 6117 TTTTACTTGTTCAACGTGGTTTT--TATAAATGTGGCAATCACCACCATTCCAAATAAAT 6174
|||| ||||||||| ||||| |||||||||| |||||| ||| |||| | |||
Sbjct 8780 TTTTGCTTGTTCAAAATGGTTAACATATAAATGTGT--ATCACCGCCAGTCCAGACAAAA 8837
Query 6175 TCACCAACATCTAAACCCGTAATTTGTGCAATCATATGAGTTAGTAGTGAATAACTACTG 6234
||||| || ||||||| || ||| |||| ||||||||| ||||| | ||| ||
Sbjct 8838 TCACCTACGCCTAAACCACAAACTTGAGCAACCATATGAGTCAGTAGAGCATAGCTGGCA 8897
Query 6235 ATATTAAATGGAACTCCCAAAAATAGATCAGC 6266
||||||||||| || || || || | ||| ||
Sbjct 8898 ATATTAAATGGCACCCCTAAGAAAACATCTGC 8929
>seq11149
Length=204457
Score = 89.7 bits (98), Expect = 1e-12
Identities = 245/370 (66%), Gaps = 14/370 (4%)
Strand=Plus/Plus
Query 331934 AACATTATGGAATTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTTCATC 331993
||||| |||||| | |||| || | |||||||||| | ||| || |||||
Sbjct 130717 AACATGATGGAAATCTTCAAACTTGCTTTTCAAACCACGCAAAATATCAATTGTTTCTGA 130776
Query 331994 AATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTC 332053
||| | |||||| || |||||||| |||||||| | || |||| |||||| ||
Sbjct 130777 AATAGAAGGCTCATTCACATCAATTTTTTGGAAACGACGTGATAGTGCATGATCTTTTTC 130836
Query 332054 GATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACACG-AATCTCACCACGTG 332112
| || |||||||| | | || |||| |||||| ||| || || |||| |
Sbjct 130837 AAATACTTGGCGATATTCTTGGAAAGTGGTTGAACCAATACAACGTAAACT-ACCATTCG 130895
Query 332113 AAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAAC---CATTACTTGCGGAACCAG 332169
| || || |||| | ||| |||||| | || | |||||| | ||||
Sbjct 130896 CCAACGCAGGTTTAATTAAATTCGATGCGTCCATGGTACTGCCCATACTTGAG---CCAG 130952
Query 332170 CCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTT---A 332226
| |||| || ||||||||||||||||| || | ||| | ||| |||||||| |
Sbjct 130953 CACCAATGATCATATGAATTTCATCAATAAATAAAATTG---CTTCTGGTTTCTTTTTCA 131009
Query 332227 GTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCAG 332286
| || || | | | | ||||| |||||| |||||||| || || ||||| |||
Sbjct 131010 AAGCATTGAGAAGCTGTTTCAAGCGTTTTTCAAAGTCACCACGGTATTTTGTACCTGCAA 131069
Query 332287 TCAATGCACC 332296
|||||| ||
Sbjct 131070 CCAATGCGCC 131079
Score = 86.0 bits (94), Expect = 1e-11
Identities = 168/245 (69%), Gaps = 5/245 (2%)
Strand=Plus/Plus
Query 331339 GATCTGCTTTTTCAATTTCATCAAGTAACAGTACTGCATTAGGGAA-CTGCTCAATTTTA 331397
||| |||||||||||||||||| | ||||| || || | ||| || | |||
Sbjct 130122 GATGTGCTTTTTCAATTTCATCTAATAACAAGACA-CAGTGCGGATTCTTATGAATCGCG 130180
Query 331398 TCCAACAGTAAACCGTTACCAGAATCATGACCAACATAACCTGGAGGTGAACCAATTAGT 331457
|| ||||||||| ||| ||||| |||||||||||||||||| | |||||| |
Sbjct 130181 TCAGTCAGTAAACC---ACCTTGATCATAACCAACATAACCTGGAGGCGCACCAATCAAA 130237
Query 331458 TTAGAAACAGTATGTTCTTGAGAAAATTCTGACATATCAAAGCGAATGAGTTCCGCACCA 331517
|||||||| ||| | | |||| |||||||| || |||| || || ||||
Sbjct 130238 CGAGAAACAGCATGACGCTCCATATATTCAGACATATCGAAACGAACAAGCTCTACACCC 130297
Query 331518 GTTGCGTCTGCTAATGCTTTGGTAATTTCTGTTTTACCAGTACCAGATGGTCCAACAAAC 331577
| ||| ||| |||||| | ||||||||||||| ||| | || || ||||
Sbjct 130298 AGCAATTTTGCCAATTGTTTGGTCACTTCTGTTTTACCAACACCTGTAGGCCCTGCAAAA 130357
Query 331578 ATAAA 331582
| |||
Sbjct 130358 ACAAA 130362
>seq9384
Length=121766
Score = 86.0 bits (94), Expect = 1e-11
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 209108 TTGGCAGTGAGTGTGGGATTCGAACCCACGATACGCTTTCGCATATGCTACCTTAGCAGG 209167
||||| ||||| | ||||||||||||| |||||| || | | ||||| ||||||||||
Sbjct 33499 TTGGCGGTGAGAGAGGGATTCGAACCCTCGATACAGTTACCCGTATGCATCCTTAGCAGG 33558
Query 209168 GTAGTGATTTCAACCACTCATCCAACTCAC 209197
| ||| ||||| ||||||| ||| |||||
Sbjct 33559 GATGTGGTTTCAGCCACTCACCCATCTCAC 33588
>seq9803
Length=69196
Score = 84.2 bits (92), Expect = 5e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 209024 ATTGGTGGGCCATCGGTGAGTCGAACACCGTACCGAACGATTATGAGTCGTTTGCTCTAA 209083
|||||||| || || ||||||||||||| | ||| | ||||||||||| ||||||||
Sbjct 52701 ATTGGTGGCCCCTCTGTGAGTCGAACACAGCACCAACGGATTATGAGTCCGCTGCTCTAA 52642
Query 209084 CCACGCGTGAGCTAATGGCCCGTA 209107
||| || |||||||| || |||||
Sbjct 52641 CCAAGCATGAGCTAAGGGGCCGTA 52618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1113615493733832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |