Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027381.1
Length=68365
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 113 2e-20
seq11622 86.0 3e-12
seq7352 86.0 3e-12
seq14363 82.4 3e-11
>seq11759
Length=158816
Score = 113 bits (124), Expect = 2e-20
Identities = 250/370 (68%), Gaps = 4/370 (1%)
Strand=Plus/Minus
Query 8646 GCAACAGATGGTTCTGCTGGTATTGATTTACGAGCCAATACAGTT-ATGCCATTCGAACT 8704
|||||| ||||| || ||| | || ||||| || | || | || |||| || |
Sbjct 86562 GCAACAACAGGTTCAGCGGGTTTGGACTTACGTGCATGTGTAGAAGAAGCGATTCAAA-T 86504
Query 8705 TAAACCGGGAGAAACTACTCTGGTAAATACTGGTTTAGCTATCCATCTGGATGATGTTCA 8764
| |||| || ||||| |||| || || ||| | || || || | || ||| | |
Sbjct 86503 TGAACCTGGTCAAACTGTGTTGGTTAAAACAGGTATGGCCATTTATATTGAAGATACTAA 86444
Query 8765 CTATGCAGGTATGATTTTACCTCGTTCTGGGTTAGGGCATAAACATGGTATTGTGCTTGG 8824
| ||| ||| | ||||||| ||||| || || || ||||| ||||| || || | ||
Sbjct 86443 TTTTGCTGGTCTAGTTTTACCACGTTCGGGCTTGGGCCATAAGCATGGGATCGTATTGGG 86384
Query 8825 AAATCTTACAGGTCTCATTGATAGTGATTATCAAGGGGAACTGATGGTAAGCCTCTGGAA 8884
|| | || | |||||| ||||||||||| ||| ||||||| | |||||
Sbjct 86383 CAACTTGGTTGGCTTAATTGATTCAGATTATCAAGGCGAATTGATGGTTTCTGTTTGGAA 86324
Query 8885 TCGCTCTACAAAGC-CTTTTACTATTAATCCAGGTGACCGTATTGCTCAGTTAGTTATTG 8943
||| | |||| | | |||||| | | |||||||| ||| | || |||| ||| | |
Sbjct 86323 TCG-TGGTCAAACCACCTTTACTTTAGAACCAGGTGAGCGTTTAGCACAGTATGTTTTGG 86265
Query 8944 TGCCTGTAATGCAGCCTGAATTTGTTATAGTAGACTCTTTTGAAGCTACTGAAAGAGGCG 9003
|||||||| | || | |||||| ||| ||| |||||||| |||||| | || |
Sbjct 86264 TGCCTGTAGTTCAAGCGCAATTTGATATTGTAAGTGAATTTGAAGCGACTGAACGTGGTG 86205
Query 9004 AAGGTGGTTT 9013
||||||||
Sbjct 86204 CTGGTGGTTT 86195
>seq11622
Length=276999
Score = 86.0 bits (94), Expect = 3e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 17585 GTTCAATTTAATACTGAAACAGACCTTATTATATCTGTAGGTGATTTAATTGACCGTGGT 17644
||||||||||| ||||| || || | || ||||||| ||| | |||| ||||||
Sbjct 125538 GTTCAATTTAACTTTGAAAAGGATCTATTGATTGCTGTAGGGGATATTGTTGATCGTGGT 125597
Query 17645 ACTCAAAACGTAGAGTGTTTACGTCTATTAAAAGAACCTTGGTTTAAAGCTGTTTTAGGT 17704
|| | | | | ||||| | ||| | ||| |||||||||||||||||||||||
Sbjct 125598 CCTGACAGTTTGAAATGTTTGCATCTGCTTGCAGAGCCTTGGTTTAAAGCTGTTTTAGGC 125657
Query 17705 AATCATGAAGTAATG 17719
|||||||||| ||||
Sbjct 125658 AATCATGAAGAAATG 125672
>seq7352
Length=278960
Score = 86.0 bits (94), Expect = 3e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 64673 CGGAATGTAGCACAGCCGGGTAGTGCATCTGCTTTGGGAGCAGAGGGTCATAGGTTCAAA 64732
|||| ||||| ||||| ||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 263666 CGGAGCGTAGCGCAGCCTGGTAGCGCATCTGTTTTGGGAGCAGAGGGTCGCAGGTTCAAA 263607
Query 64733 TCCTATCATTCCGACCA 64749
|||| | ||||||||
Sbjct 263606 TCCTGCCGCTCCGACCA 263590
>seq14363
Length=24975
Score = 82.4 bits (90), Expect = 3e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 64673 CGGAATGTAGCACAGCCGGGTAGTGCATCTGCTTTGGGAGCAGAGGGTCATAGGTTCAAA 64732
|||| ||||| ||||| ||||| ||||||||||||||||||||||||| |||| ||
Sbjct 10218 CGGAGCGTAGCGCAGCCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCGAGTTCGAA 10277
Query 64733 TCCTATCATTCCGACCAAATTATTC 64757
||| | ||||||||||| ||||
Sbjct 10278 TCCCGCCGCTCCGACCAAATGATTC 10302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 218603072071874
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |