Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027381.1 Length=68365 Score E Sequences producing significant alignments: (Bits) Value seq11759 113 2e-20 seq11622 86.0 3e-12 seq7352 86.0 3e-12 seq14363 82.4 3e-11 >seq11759 Length=158816 Score = 113 bits (124), Expect = 2e-20 Identities = 250/370 (68%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 8646 GCAACAGATGGTTCTGCTGGTATTGATTTACGAGCCAATACAGTT-ATGCCATTCGAACT 8704 |||||| ||||| || ||| | || ||||| || | || | || |||| || | Sbjct 86562 GCAACAACAGGTTCAGCGGGTTTGGACTTACGTGCATGTGTAGAAGAAGCGATTCAAA-T 86504 Query 8705 TAAACCGGGAGAAACTACTCTGGTAAATACTGGTTTAGCTATCCATCTGGATGATGTTCA 8764 | |||| || ||||| |||| || || ||| | || || || | || ||| | | Sbjct 86503 TGAACCTGGTCAAACTGTGTTGGTTAAAACAGGTATGGCCATTTATATTGAAGATACTAA 86444 Query 8765 CTATGCAGGTATGATTTTACCTCGTTCTGGGTTAGGGCATAAACATGGTATTGTGCTTGG 8824 | ||| ||| | ||||||| ||||| || || || ||||| ||||| || || | || Sbjct 86443 TTTTGCTGGTCTAGTTTTACCACGTTCGGGCTTGGGCCATAAGCATGGGATCGTATTGGG 86384 Query 8825 AAATCTTACAGGTCTCATTGATAGTGATTATCAAGGGGAACTGATGGTAAGCCTCTGGAA 8884 || | || | |||||| ||||||||||| ||| ||||||| | ||||| Sbjct 86383 CAACTTGGTTGGCTTAATTGATTCAGATTATCAAGGCGAATTGATGGTTTCTGTTTGGAA 86324 Query 8885 TCGCTCTACAAAGC-CTTTTACTATTAATCCAGGTGACCGTATTGCTCAGTTAGTTATTG 8943 ||| | |||| | | |||||| | | |||||||| ||| | || |||| ||| | | Sbjct 86323 TCG-TGGTCAAACCACCTTTACTTTAGAACCAGGTGAGCGTTTAGCACAGTATGTTTTGG 86265 Query 8944 TGCCTGTAATGCAGCCTGAATTTGTTATAGTAGACTCTTTTGAAGCTACTGAAAGAGGCG 9003 |||||||| | || | |||||| ||| ||| |||||||| |||||| | || | Sbjct 86264 TGCCTGTAGTTCAAGCGCAATTTGATATTGTAAGTGAATTTGAAGCGACTGAACGTGGTG 86205 Query 9004 AAGGTGGTTT 9013 |||||||| Sbjct 86204 CTGGTGGTTT 86195 >seq11622 Length=276999 Score = 86.0 bits (94), Expect = 3e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 17585 GTTCAATTTAATACTGAAACAGACCTTATTATATCTGTAGGTGATTTAATTGACCGTGGT 17644 ||||||||||| ||||| || || | || ||||||| ||| | |||| |||||| Sbjct 125538 GTTCAATTTAACTTTGAAAAGGATCTATTGATTGCTGTAGGGGATATTGTTGATCGTGGT 125597 Query 17645 ACTCAAAACGTAGAGTGTTTACGTCTATTAAAAGAACCTTGGTTTAAAGCTGTTTTAGGT 17704 || | | | | ||||| | ||| | ||| ||||||||||||||||||||||| Sbjct 125598 CCTGACAGTTTGAAATGTTTGCATCTGCTTGCAGAGCCTTGGTTTAAAGCTGTTTTAGGC 125657 Query 17705 AATCATGAAGTAATG 17719 |||||||||| |||| Sbjct 125658 AATCATGAAGAAATG 125672 >seq7352 Length=278960 Score = 86.0 bits (94), Expect = 3e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 64673 CGGAATGTAGCACAGCCGGGTAGTGCATCTGCTTTGGGAGCAGAGGGTCATAGGTTCAAA 64732 |||| ||||| ||||| ||||| ||||||| ||||||||||||||||| ||||||||| Sbjct 263666 CGGAGCGTAGCGCAGCCTGGTAGCGCATCTGTTTTGGGAGCAGAGGGTCGCAGGTTCAAA 263607 Query 64733 TCCTATCATTCCGACCA 64749 |||| | |||||||| Sbjct 263606 TCCTGCCGCTCCGACCA 263590 >seq14363 Length=24975 Score = 82.4 bits (90), Expect = 3e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 64673 CGGAATGTAGCACAGCCGGGTAGTGCATCTGCTTTGGGAGCAGAGGGTCATAGGTTCAAA 64732 |||| ||||| ||||| ||||| ||||||||||||||||||||||||| |||| || Sbjct 10218 CGGAGCGTAGCGCAGCCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCGAGTTCGAA 10277 Query 64733 TCCTATCATTCCGACCAAATTATTC 64757 ||| | ||||||||||| |||| Sbjct 10278 TCCCGCCGCTCCGACCAAATGATTC 10302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 218603072071874