Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027399.1
Length=346602
Score E
Sequences producing significant alignments: (Bits) Value
seq9756 91.5 3e-13
seq7041 91.5 3e-13
>seq9756
Length=130628
Score = 91.5 bits (100), Expect = 3e-13
Identities = 241/367 (66%), Gaps = 16/367 (4%)
Strand=Plus/Plus
Query 48474 GCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACT- 48532
|| ||||| ||||||||||| || || ||| | || || ||| | || ||| || |
Sbjct 8953 GCCGGTACCAAATACCGTGGCGATTTTGAACAGCGCTTGAAAGCAGTCATGAAACAATTG 9012
Query 48533 --TAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCT 48590
| |||| | ||| || ||||| || || || || | |||| |||| |||| |
Sbjct 9013 GCTGAAAAGCCAGA---TGCTATTTTATTTATCGACGAGATTCATACCTTGATTGGTGGT 9069
Query 48591 GGTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGT 48650
|| | | |||| || | ||||| ||||| | | ||||| ||||| || |
Sbjct 9070 GGCGCTGCCAGCGGCGGTACCCTGGATGCAAGCAACTTGCTTAAACCAGCACTATCTAAT 9129
Query 48651 GG-----TGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTG 48705
|| | | || | ||||||||||| |||||| ||||||| || | | | |
Sbjct 9130 GGCTCGCTCAAATGC-----ATCGGTGCAACTACTTATCAGGAATACCGTGGCATCTTCG 9184
Query 48706 AAAAAGATGCTGCATTTTCCCGCCGCTTCACTAAAATTGATGTAGTTGAACCTAGTATTA 48765
||||||| ||| || || ||||||||| ||||| || || || ||||| ||| |
Sbjct 9185 AAAAAGACCATGCCTTATCTCGCCGCTTCCAAAAAATCGACGTGGTGGAACCAAGTGTGG 9244
Query 48766 ACGAAACACGTGAAATTATTAATGGTCTGAAAGGTACTTATGAAAAATATCATAACGTAA 48825
|||||| |||||| |||| || ||||| || | |||| | | |||| ||| |
Sbjct 9245 CCGAAACCATTGAAATCCTTAAAGGCTTGAAATCTAAATTTGAAGAGCACCATAGCGTGA 9304
Query 48826 CATTCAG 48832
|| |||
Sbjct 9305 AATACAG 9311
>seq7041
Length=191181
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 178959 ACGTCCCCTTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTCG 179018
||| |||||||| ||| |||||||| |||||||||||||||||||||||| | ||||||
Sbjct 50764 ACGGCCCCTTAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCG 50823
Query 179019 AGTCCAGTAGGGG 179031
||||| | |||||
Sbjct 50824 AGTCCTGCAGGGG 50836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108781226653941
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |