Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq9756 91.5 3e-13 seq7041 91.5 3e-13 >seq9756 Length=130628 Score = 91.5 bits (100), Expect = 3e-13 Identities = 241/367 (66%), Gaps = 16/367 (4%) Strand=Plus/Plus Query 48474 GCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACT- 48532 || ||||| ||||||||||| || || ||| | || || ||| | || ||| || | Sbjct 8953 GCCGGTACCAAATACCGTGGCGATTTTGAACAGCGCTTGAAAGCAGTCATGAAACAATTG 9012 Query 48533 --TAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCT 48590 | |||| | ||| || ||||| || || || || | |||| |||| |||| | Sbjct 9013 GCTGAAAAGCCAGA---TGCTATTTTATTTATCGACGAGATTCATACCTTGATTGGTGGT 9069 Query 48591 GGTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGT 48650 || | | |||| || | ||||| ||||| | | ||||| ||||| || | Sbjct 9070 GGCGCTGCCAGCGGCGGTACCCTGGATGCAAGCAACTTGCTTAAACCAGCACTATCTAAT 9129 Query 48651 GG-----TGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTG 48705 || | | || | ||||||||||| |||||| ||||||| || | | | | Sbjct 9130 GGCTCGCTCAAATGC-----ATCGGTGCAACTACTTATCAGGAATACCGTGGCATCTTCG 9184 Query 48706 AAAAAGATGCTGCATTTTCCCGCCGCTTCACTAAAATTGATGTAGTTGAACCTAGTATTA 48765 ||||||| ||| || || ||||||||| ||||| || || || ||||| ||| | Sbjct 9185 AAAAAGACCATGCCTTATCTCGCCGCTTCCAAAAAATCGACGTGGTGGAACCAAGTGTGG 9244 Query 48766 ACGAAACACGTGAAATTATTAATGGTCTGAAAGGTACTTATGAAAAATATCATAACGTAA 48825 |||||| |||||| |||| || ||||| || | |||| | | |||| ||| | Sbjct 9245 CCGAAACCATTGAAATCCTTAAAGGCTTGAAATCTAAATTTGAAGAGCACCATAGCGTGA 9304 Query 48826 CATTCAG 48832 || ||| Sbjct 9305 AATACAG 9311 >seq7041 Length=191181 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 178959 ACGTCCCCTTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTCG 179018 ||| |||||||| ||| |||||||| |||||||||||||||||||||||| | |||||| Sbjct 50764 ACGGCCCCTTAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCG 50823 Query 179019 AGTCCAGTAGGGG 179031 ||||| | ||||| Sbjct 50824 AGTCCTGCAGGGG 50836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108781226653941